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yanosim_0.1-1_amd64.changes (click to toggle)
Format:1.8
Date:Tue, 16 Jun 2020 20:24:59 +0530
Source:yanosim
Binary:yanosim
Architecture:source amd64
Version:0.1-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Nilesh Patra <npatra974@gmail.com>
Description:
yanosim    - read simulator nanopore DRS datasets
Closes:962965
Changes:
yanosim (0.1-1) unstable; urgency=medium

  * Initial release (Closes: #962965)
Files:
2f162303a7f68d2692770670d94515c5 1985 science optional yanosim_0.1-1.dsc
4039859166283ac80a2221b08a0c3d88 7948 science optional yanosim_0.1.orig.tar.gz
129d02262ef0f147d855e6101a1184ca 2972 science optional yanosim_0.1-1.debian.tar.xz
938595eeebbaa23d29f820b0ad3cf9d3 5847 science optional yanosim_0.1-1_amd64.buildinfo
910edf51c8f678d9229fccaa4312122e 9152 science optional yanosim_0.1-1_amd64.deb
yanosim_0.1-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:yanosim
Binary:yanosim
Architecture:any
Version:0.1-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Nilesh Patra <npatra974@gmail.com>
Homepage:https://github.com/bartongroup/yanosim
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/med-team/yanosim
Vcs-Git:https://salsa.debian.org/med-team/yanosim.git
Testsuite:autopkgtest-pkg-python
Build-Depends:debhelper-compat (=13), python3, dh-python, python3-setuptools
Package-List:yanosim deb science optional arch=any
Files:
4039859166283ac80a2221b08a0c3d88 7948 yanosim_0.1.orig.tar.gz
129d02262ef0f147d855e6101a1184ca 2972 yanosim_0.1-1.debian.tar.xz
lintian 2.79.0~bpo10+1 check for yanosim_0.1-1.dsc (click to toggle)
README.source for yanosim_0.1-1.dsc (click to toggle)
No README.source in this package
control file for yanosim_0.1-1_amd64.deb (click to toggle)
Package:yanosim
Version:0.1-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:45
Depends:python3-click, python3-numpy, python3-pysam, python3-scipy, python3:any
Section:science
Priority:optional
Homepage:https://github.com/bartongroup/yanosim
Description:
read simulator nanopore DRS datasets
 Yanosim has three options:
 .
 1. yanosim model:
 .
 Creates an model of mismatches, insertions and deletions
 based on an alignment of nanopore DRS reads to a
 reference. Reads should be aligned to a transcriptome
 i.e. without spliced alignment, using minimap2. They
 should have the cs tag.
 .
 2. yanosim quantify:
 .
 Quantify the number of reads mapping to each
 transcript in a reference, so that the right number
 of reads can be simulated.
 .
 3. yanosim simulate:
 .
 Given a model created using yanosim model, and
 per-transcript read counts created using yanosim
 simulate, simulate error-prone long-reads from the
 given fasta file.
lintian 2.79.0~bpo10+1 check for yanosim_0.1-1_amd64.deb (click to toggle)
contents of yanosim_0.1-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-16 14:54 ./
drwxr-xr-x root/root         0 2020-06-16 14:54 ./usr/
drwxr-xr-x root/root         0 2020-06-16 14:54 ./usr/bin/
-rwxr-xr-x root/root       376 2020-06-16 14:54 ./usr/bin/yanosim
drwxr-xr-x root/root         0 2020-06-16 14:54 ./usr/lib/
drwxr-xr-x root/root         0 2020-06-16 14:54 ./usr/lib/python3/
drwxr-xr-x root/root         0 2020-06-16 14:54 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2020-06-16 14:54 ./usr/lib/python3/dist-packages/yanosim/
-rw-r--r-- root/root         0 2020-04-28 15:54 ./usr/lib/python3/dist-packages/yanosim/__init__.py
-rw-r--r-- root/root      3678 2020-04-28 15:54 ./usr/lib/python3/dist-packages/yanosim/main.py
-rw-r--r-- root/root      9907 2020-04-28 15:54 ./usr/lib/python3/dist-packages/yanosim/model.py
-rw-r--r-- root/root      3933 2020-04-28 15:54 ./usr/lib/python3/dist-packages/yanosim/simulate.py
-rw-r--r-- root/root      1454 2020-04-28 15:54 ./usr/lib/python3/dist-packages/yanosim/utils.py
drwxr-xr-x root/root         0 2020-06-16 14:54 ./usr/lib/python3/dist-packages/yanosim-0.1.egg-info/
-rw-r--r-- root/root       206 2020-06-16 14:54 ./usr/lib/python3/dist-packages/yanosim-0.1.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2020-06-16 14:54 ./usr/lib/python3/dist-packages/yanosim-0.1.egg-info/dependency_links.txt
-rw-r--r-- root/root        50 2020-06-16 14:54 ./usr/lib/python3/dist-packages/yanosim-0.1.egg-info/entry_points.txt
-rw-r--r-- root/root         0 2020-06-16 14:54 ./usr/lib/python3/dist-packages/yanosim-0.1.egg-info/requires.txt
-rw-r--r-- root/root         8 2020-06-16 14:54 ./usr/lib/python3/dist-packages/yanosim-0.1.egg-info/top_level.txt
drwxr-xr-x root/root         0 2020-06-16 14:54 ./usr/share/
drwxr-xr-x root/root         0 2020-06-16 14:54 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-06-16 14:54 ./usr/share/doc/yanosim/
-rw-r--r-- root/root       158 2020-06-16 14:54 ./usr/share/doc/yanosim/changelog.Debian.gz
-rw-r--r-- root/root      1355 2020-06-16 14:54 ./usr/share/doc/yanosim/copyright
drwxr-xr-x root/root         0 2020-06-16 14:54 ./usr/share/man/
drwxr-xr-x root/root         0 2020-06-16 14:54 ./usr/share/man/man1/
-rw-r--r-- root/root       469 2020-06-16 14:54 ./usr/share/man/man1/yanosim.1.gz

Timestamp: 21.06.2020 / 22:01:05 (UTC)