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vt_0.57721+ds-1_amd64.changes (click to toggle)
Format:1.8
Date:Thu, 18 Jun 2020 09:57:21 +0200
Source:vt
Binary:vt vt-dbgsym vt-examples
Architecture:source amd64 all
Version:0.57721+ds-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Antoni Villalonga <antoni@friki.cat>
Description:
vt         - toolset for short variant discovery in genetic sequence data
vt-examples - toolset for short variant discovery in genetic sequence data (exa
Closes:963050 963051
Changes:
vt (0.57721+ds-1) unstable; urgency=medium

  * Initial release (Closes: #963050, #963051)
Files:
2eee3f3f5f125e1aaf8fbe7fec5813d9 2163 science optional vt_0.57721+ds-1.dsc
d431231e862dc0adaa30457001f064f0 18574416 science optional vt_0.57721+ds.orig.tar.xz
edce3716d80367abe204aa636adf5366 7112 science optional vt_0.57721+ds-1.debian.tar.xz
856bdb5ae1dfbcb2f92b422d77cb9157 30957132 debug optional vt-dbgsym_0.57721+ds-1_amd64.deb
114f96c249e7ca9086f7d7090f7a4b4c 18358596 science optional vt-examples_0.57721+ds-1_all.deb
6d399c7517b1868088006c14d080969b 8503 science optional vt_0.57721+ds-1_amd64.buildinfo
71d5aa6d2da0cf8d3fcb7f22ee8117b3 750548 science optional vt_0.57721+ds-1_amd64.deb
vt_0.57721+ds-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:vt
Binary:vt, vt-examples
Architecture:any all
Version:0.57721+ds-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Antoni Villalonga <antoni@friki.cat>
Homepage:https://genome.sph.umich.edu/wiki/Vt
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/med-team/vt
Vcs-Git:https://salsa.debian.org/med-team/vt.git
Testsuite:autopkgtest
Build-Depends:debhelper-compat (=13), zlib1g-dev, libbz2-dev, liblzma-dev, libcurl4-openssl-dev, libssl-dev, libdeflate-dev, libhts-dev, libpcre2-dev, libsvm-dev, libtclap-dev, r-mathlib, r-base-core
Package-List:vt deb science optional arch=any vt-examples deb science optional arch=all
Files:
d431231e862dc0adaa30457001f064f0 18574416 vt_0.57721+ds.orig.tar.xz
edce3716d80367abe204aa636adf5366 7112 vt_0.57721+ds-1.debian.tar.xz
lintian 2.79.0~bpo10+1 check for vt_0.57721+ds-1.dsc (click to toggle)
README.source for vt_0.57721+ds-1.dsc (click to toggle)
No README.source in this package
control file for vt_0.57721+ds-1_amd64.deb (click to toggle)
Package:vt
Version:0.57721+ds-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:2513
Depends:libc6 (>=2.29), libgcc-s1 (>=3.0), libhts3 (>=1.10), libpcre2-8-0 (>=10.22), libstdc++6 (>=5.2), r-base-core
Section:science
Priority:optional
Homepage:https://genome.sph.umich.edu/wiki/Vt
Description:
toolset for short variant discovery in genetic sequence data
 vt is a variant tool set that discovers short variants from Next Generation
 Sequencing data.
 .
 Vt-normalize is a tool to normalize representation of genetic variants in
 the VCF.  Variant normalization is formally defined as the consistent
 representation of genetic variants in an unambiguous and concise way.  In
 vt a simple general algorithm to enforce this is implemented.
lintian 2.79.0~bpo10+1 check for vt_0.57721+ds-1_amd64.deb (click to toggle)
contents of vt_0.57721+ds-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-18 07:57 ./
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/bin/
-rwxr-xr-x root/root   2558144 2020-06-18 07:57 ./usr/bin/vt
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/share/
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/share/doc/vt/
-rw-r--r-- root/root       306 2020-06-18 07:57 ./usr/share/doc/vt/README.test
-rw-r--r-- root/root       162 2020-06-18 07:57 ./usr/share/doc/vt/changelog.Debian.gz
-rw-r--r-- root/root      1766 2020-06-18 07:57 ./usr/share/doc/vt/copyright
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/share/man/
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/share/man/man1/
-rw-r--r-- root/root       659 2020-06-18 07:57 ./usr/share/man/man1/vt.1.gz
control file for vt-dbgsym_0.57721+ds-1_amd64.deb (click to toggle)
Package:vt-dbgsym
Source:vt
Version:0.57721+ds-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:31325
Depends:vt (=0.57721+ds-1)
Section:debug
Priority:optional
Description:
debug symbols for vt
Build-Ids:f8739e76db8c26093c41c4af574b4135b288a844
lintian 2.79.0~bpo10+1 check for vt-dbgsym_0.57721+ds-1_amd64.deb (click to toggle)
contents of vt-dbgsym_0.57721+ds-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-18 07:57 ./
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/lib/
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/lib/debug/.build-id/f8/
-rw-r--r-- root/root  32066048 2020-06-18 07:57 ./usr/lib/debug/.build-id/f8/739e76db8c26093c41c4af574b4135b288a844.debug
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/share/
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-06-18 07:57 ./usr/share/doc/vt-dbgsym -> vt
control file for vt-examples_0.57721+ds-1_all.deb (click to toggle)
Package:vt-examples
Source:vt
Version:0.57721+ds-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:17972
Enhances:vt
Section:science
Priority:optional
Homepage:https://genome.sph.umich.edu/wiki/Vt
Description:
toolset for short variant discovery in genetic sequence data (examples)
 vt is a variant tool set that discovers short variants from Next Generation
 Sequencing data.
 .
 Vt-normalize is a tool to normalize representation of genetic variants in
 the VCF.  Variant normalization is formally defined as the consistent
 representation of genetic variants in an unambiguous and concise way.  In
 vt a simple general algorithm to enforce this is implemented.
 .
 This package contains some example data.
lintian 2.79.0~bpo10+1 check for vt-examples_0.57721+ds-1_all.deb (click to toggle)
contents of vt-examples_0.57721+ds-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-18 07:57 ./
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/share/
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/share/doc/vt/
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/share/doc/vt/examples/
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/share/doc/vt/examples/decompose/
-rw-r--r-- root/root      2661 2018-05-09 00:33 ./usr/share/doc/vt/examples/decompose/01_IN_multi.vcf
-rw-r--r-- root/root       380 2018-05-09 00:33 ./usr/share/doc/vt/examples/decompose/01_OUT_multi.stderr
-rw-r--r-- root/root      2903 2018-05-09 00:33 ./usr/share/doc/vt/examples/decompose/01_OUT_multi.vcf
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/share/doc/vt/examples/decompose_blocksub/
-rw-r--r-- root/root      2237 2018-05-09 00:33 ./usr/share/doc/vt/examples/decompose_blocksub/01_IN_even_length.vcf.gz
-rw-r--r-- root/root       403 2018-05-09 00:33 ./usr/share/doc/vt/examples/decompose_blocksub/01_OUT_even_length.stderr
-rw-r--r-- root/root      2295 2018-05-09 00:33 ./usr/share/doc/vt/examples/decompose_blocksub/01_OUT_even_length.vcf.gz
-rw-r--r-- root/root      2236 2018-05-09 00:33 ./usr/share/doc/vt/examples/decompose_blocksub/02_IN_uneven_length.vcf.gz
-rw-r--r-- root/root       402 2018-05-09 00:33 ./usr/share/doc/vt/examples/decompose_blocksub/02_OUT_uneven_length.stderr
-rw-r--r-- root/root      2295 2018-05-09 00:33 ./usr/share/doc/vt/examples/decompose_blocksub/02_OUT_uneven_length.vcf.gz
-rw-r--r-- root/root      2237 2018-05-09 00:33 ./usr/share/doc/vt/examples/decompose_blocksub/03_IN_phased_even_length.vcf.gz
-rw-r--r-- root/root       402 2018-05-09 00:33 ./usr/share/doc/vt/examples/decompose_blocksub/03_OUT_phased_even_length.stderr
-rw-r--r-- root/root      2321 2018-05-09 00:33 ./usr/share/doc/vt/examples/decompose_blocksub/03_OUT_phased_even_length.vcf.gz
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/share/doc/vt/examples/normalize/
-rw-r--r-- root/root      4976 2018-05-09 00:33 ./usr/share/doc/vt/examples/normalize/01_IN.vcf.gz
-rw-r--r-- root/root      1329 2018-05-09 00:33 ./usr/share/doc/vt/examples/normalize/01_OUT.stderr
-rw-r--r-- root/root      5667 2018-05-09 00:33 ./usr/share/doc/vt/examples/normalize/01_OUT.vcf.gz
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/share/doc/vt/examples/ref/
-rw-r--r-- root/root  18335121 2018-05-09 00:33 ./usr/share/doc/vt/examples/ref/20.fa.gz
-rw-r--r-- root/root        20 2018-05-09 00:33 ./usr/share/doc/vt/examples/ref/20.fa.gz.fai
-rw-r--r-- root/root      6453 2018-05-09 00:33 ./usr/share/doc/vt/examples/ref/20.fa.gz.gzi.gz
-rw-r--r-- root/root       958 2020-06-18 07:57 ./usr/share/doc/vt/examples/test.sh.gz
-rw-r--r-- root/root       453 2020-06-18 07:57 ./usr/share/doc/vt/run-unit-test
drwxr-xr-x root/root         0 2020-06-18 07:57 ./usr/share/doc/vt-examples/
-rw-r--r-- root/root       162 2020-06-18 07:57 ./usr/share/doc/vt-examples/changelog.Debian.gz
-rw-r--r-- root/root      1766 2020-06-18 07:57 ./usr/share/doc/vt-examples/copyright

Timestamp: 18.06.2020 / 13:01:20 (UTC)