voronota_1.29.4415+ds-1_amd64.changes (click to toggle) | |
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Format: | 1.8 |
Date: | Mon, 22 Sep 2025 06:49:56 -0400 |
Source: | voronota |
Binary: | python3-voronotalt python3-voronotalt-dbgsym voronota voronota-dbgsym |
Architecture: | source amd64 |
Version: | 1.29.4415+ds-1 |
Distribution: | unstable |
Urgency: | medium |
Maintainer: | Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> |
Changed-By: | Andrius Merkys <merkys@debian.org> |
Description: | python3-voronotalt - Voronoi diagram-based tool to find atom contacts - Python3 bindin voronota - Voronoi diagram-based tool to find atom contacts |
Changes: | voronota (1.29.4415+ds-1) unstable; urgency=medium * New upstream version 1.29.4415+ds * Install Python3 bindings. * Update homepage and source location. |
Files: | 769bc3ba2874552075ea5e10d4b369d7 2177 science optional voronota_1.29.4415+ds-1.dsc 15a9f7d6128e9f6141f5588e2a96ef11 32455720 science optional voronota_1.29.4415+ds.orig.tar.xz 98adc2f050d94f5ccaadd5aa1c992099 6500 science optional voronota_1.29.4415+ds-1.debian.tar.xz 28c1a560c59d0a53fafc1da0f4aac56a 1107756 debug optional python3-voronotalt-dbgsym_1.29.4415+ds-1_amd64.deb c2a08abeb48d336bf12e0357de9c329a 113648 python optional python3-voronotalt_1.29.4415+ds-1_amd64.deb 2f7cc4d139a4a893863872fafb129b2b 38366852 debug optional voronota-dbgsym_1.29.4415+ds-1_amd64.deb bc8400f94046a1856f9f4ff6aacd3797 10131 science optional voronota_1.29.4415+ds-1_amd64.buildinfo 46a4d9119887517eff102ee45a70ea2b 2687976 science optional voronota_1.29.4415+ds-1_amd64.deb |
control file for python3-voronotalt_1.29.4415+ds-1_amd64.deb (click to toggle) | |
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Package: | python3-voronotalt |
Source: | voronota |
Version: | 1.29.4415+ds-1 |
Architecture: | amd64 |
Maintainer: | Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> |
Installed-Size: | 437 |
Depends: | python3 (<<3.14), python3 (>=3.13~), python3:any, libc6 (>=2.14), libgcc-s1 (>=3.0), libstdc++6 (>=13.1) |
Section: | python |
Priority: | optional |
Homepage: | https://www.voronota.com |
Description: | Voronoi diagram-based tool to find atom contacts - Python3 bindings The analysis of macromolecular structures often requires a comprehensive definition of atomic neighborhoods. Such a definition can be based on the Voronoi diagram of balls, where each ball represents an atom of some van der Waals radius. Voronota is a software tool for finding all the vertices of the Voronoi diagram of balls. Such vertices correspond to the centers of the empty tangent spheres defined by quadruples of balls. Voronota is especially suitable for processing three-dimensional structures of biological macromolecules such as proteins and RNA. . Since version 1.2 Voronota also uses the Voronoi vertices to construct inter-atom contact surfaces and solvent accessible surfaces. Voronota provides tools to query contacts, generate contacts graphics, compare contacts and evaluate quality of protein structural models using contacts. . This package contains Python 3 bindings. |
contents of python3-voronotalt_1.29.4415+ds-1_amd64.deb (click to toggle) | |
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drwxr-xr-x root/root 0 2025-09-22 10:49 ./ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/lib/ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/lib/python3/ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/lib/python3/dist-packages/voronotalt/ -rw-r--r-- root/root 33 2025-09-22 06:30 ./usr/lib/python3/dist-packages/voronotalt/__init__.py -rw-r--r-- root/root 409448 2025-09-22 10:49 ./usr/lib/python3/dist-packages/voronotalt/_voronotalt.cpython-313-x86_64-linux-gnu.so -rw-r--r-- root/root 15912 2025-09-22 10:49 ./usr/lib/python3/dist-packages/voronotalt/voronotalt_python.py drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/share/ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/share/doc/python3-voronotalt/ -rw-r--r-- root/root 981 2025-09-22 10:49 ./usr/share/doc/python3-voronotalt/changelog.Debian.gz -rw-r--r-- root/root 6555 2025-09-22 10:49 ./usr/share/doc/python3-voronotalt/copyright |
copyright of python3-voronotalt_1.29.4415+ds-1_amd64.deb (click to toggle) | |
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Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: voronota Source: https://github.com/kliment-olechnovic/voronota Files-Excluded: expansion_gl/src/dependencies expansion_gl/web/ensemble.vses expansion_gl/web/voronota_viewer_app expansion_js/src/dependencies expansion_lt/swig/voronotalt_python_wrap.cxx expansion_lt/swig/voronotalt/voronotalt_python.py Files: * Copyright: 2013-2023, Kliment Olechnovič <kliment.olechnovic@bti.vu.lt> License: Expat Files: expansion_gl/resources/fonts/ubuntu_mono_regular.ttf Copyright: 2010-2011, Canonical Ltd License: UFL-1.0 PREAMBLE This licence allows the licensed fonts to be used, studied, modified and redistributed freely. The fonts, including any derivative works, can be bundled, embedded, and redistributed provided the terms of this licence are met. The fonts and derivatives, however, cannot be released under any other licence. The requirement for fonts to remain under this licence does not require any document created using the fonts or their derivatives to be published under this licence, as long as the primary purpose of the document is not to be a vehicle for the distribution of the fonts. . DEFINITIONS "Font Software" refers to the set of files released by the Copyright Holder(s) under this licence and clearly marked as such. This may include source files, build scripts and documentation. . "Original Version" refers to the collection of Font Software components as received under this licence. . "Modified Version" refers to any derivative made by adding to, deleting, or substituting -- in part or in whole -- any of the components of the Original Version, by changing formats or by porting the Font Software to a new environment. . "Copyright Holder(s)" refers to all individuals and companies who have a copyright ownership of the Font Software. . "Substantially Changed" refers to Modified Versions which can be easily identified as dissimilar to the Font Software by users of the Font Software comparing the Original Version with the Modified Version. . To "Propagate" a work means to do anything with it that, without permission, would make you directly or secondarily liable for infringement under applicable copyright law, except executing it on a computer or modifying a private copy. Propagation includes copying, distribution (with or without modification and with or without charging a redistribution fee), making available to the public, and in some countries other activities as well. . PERMISSION & CONDITIONS This licence does not grant any rights under trademark law and all such rights are reserved. . Permission is hereby granted, free of charge, to any person obtaining a copy of the Font Software, to propagate the Font Software, subject to the below conditions: . 1) Each copy of the Font Software must contain the above copyright notice and this licence. These can be included either as stand-alone text files, human-readable headers or in the appropriate machine- readable metadata fields within text or binary files as long as those fields can be easily viewed by the user. . 2) The font name complies with the following: (a) The Original Version must retain its name, unmodified. (b) Modified Versions which are Substantially Changed must be renamed to avoid use of the name of the Original Version or similar names entirely. (c) Modified Versions which are not Substantially Changed must be renamed to both (i) retain the name of the Original Version and (ii) add additional naming elements to distinguish the Modified Version from the Original Version. The name of such Modified Versions must be the name of the Original Version, with "derivative X" where X represents the name of the new work, appended to that name. . 3) The name(s) of the Copyright Holder(s) and any contributor to the Font Software shall not be used to promote, endorse or advertise any Modified Version, except (i) as required by this licence, (ii) to acknowledge the contribution(s) of the Copyright Holder(s) or (iii) with their explicit written permission. . 4) The Font Software, modified or unmodified, in part or in whole, must be distributed entirely under this licence, and must not be distributed under any other licence. The requirement for fonts to remain under this licence does not affect any document created using the Font Software, except any version of the Font Software extracted from a document created using the Font Software may only be distributed under this licence. . TERMINATION This licence becomes null and void if any of the above conditions are not met. . DISCLAIMER THE FONT SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO ANY WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT OF COPYRIGHT, PATENT, TRADEMARK, OR OTHER RIGHT. IN NO EVENT SHALL THE COPYRIGHT HOLDER BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, INCLUDING ANY GENERAL, SPECIAL, INDIRECT, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF THE USE OR INABILITY TO USE THE FONT SOFTWARE OR FROM OTHER DEALINGS IN THE FONT SOFTWARE. Files: expansion_gl/shaders/shader_fragment_screen.glsl Copyright: 2017, Simon Rodriguez 2017, Mol* contributors License: Expat Files: debian/* Copyright: 2017-2025, Andrius Merkys <merkys@debian.org> License: Expat License: Expat Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: . The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. . THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN |
control file for python3-voronotalt-dbgsym_1.29.4415+ds-1_amd64.deb (click to toggle) | |
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Package: | python3-voronotalt-dbgsym |
Source: | voronota |
Version: | 1.29.4415+ds-1 |
Auto-Built-Package: | debug-symbols |
Architecture: | amd64 |
Maintainer: | Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> |
Installed-Size: | 1148 |
Depends: | python3-voronotalt (=1.29.4415+ds-1) |
Section: | debug |
Priority: | optional |
Description: | debug symbols for python3-voronotalt |
Build-Ids: | 783bab7fff31d2bed2aad6dfc70f42928964c1f2 |
lintian 2.116.3+deb12u1 check for python3-voronotalt-dbgsym_1.29.4415+ds-1_amd64.deb (click to toggle) | |
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contents of python3-voronotalt-dbgsym_1.29.4415+ds-1_amd64.deb (click to toggle) | |
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drwxr-xr-x root/root 0 2025-09-22 10:49 ./ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/lib/ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/lib/debug/.build-id/78/ -rw-r--r-- root/root 1164744 2025-09-22 10:49 ./usr/lib/debug/.build-id/78/3bab7fff31d2bed2aad6dfc70f42928964c1f2.debug drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/share/ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-09-22 10:49 ./usr/share/doc/python3-voronotalt-dbgsym -> python3-voronotalt |
copyright of python3-voronotalt-dbgsym_1.29.4415+ds-1_amd64.deb (click to toggle) | |
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WARNING: No copyright found, please check package manually. |
control file for voronota-dbgsym_1.29.4415+ds-1_amd64.deb (click to toggle) | |
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Package: | voronota-dbgsym |
Source: | voronota |
Version: | 1.29.4415+ds-1 |
Auto-Built-Package: | debug-symbols |
Architecture: | amd64 |
Maintainer: | Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> |
Installed-Size: | 39914 |
Depends: | voronota (=1.29.4415+ds-1) |
Section: | debug |
Priority: | optional |
Description: | debug symbols for voronota |
Build-Ids: | 78409373d49fa874199e79bd9538e9a19c74454e ad6f7ac38b79a321d11a0f7bc9df7d63ea609eb8 |
contents of voronota-dbgsym_1.29.4415+ds-1_amd64.deb (click to toggle) | |
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drwxr-xr-x root/root 0 2025-09-22 10:49 ./ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/lib/ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/lib/debug/.build-id/78/ -rw-r--r-- root/root 1866864 2025-09-22 10:49 ./usr/lib/debug/.build-id/78/409373d49fa874199e79bd9538e9a19c74454e.debug drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/lib/debug/.build-id/ad/ -rw-r--r-- root/root 38937584 2025-09-22 10:49 ./usr/lib/debug/.build-id/ad/6f7ac38b79a321d11a0f7bc9df7d63ea609eb8.debug drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 52400 2025-09-22 10:49 ./usr/lib/debug/.dwz/x86_64-linux-gnu/voronota.debug drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/share/ drwxr-xr-x root/root 0 2025-09-22 10:49 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-09-22 10:49 ./usr/share/doc/voronota-dbgsym -> voronota |
copyright of voronota-dbgsym_1.29.4415+ds-1_amd64.deb (click to toggle) | |
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WARNING: No copyright found, please check package manually. |
Timestamp: 22.09.2025 / 13:02:33 (UTC)