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vdjtools_1.2.1+git20190311-1_amd64.changes (click to toggle)
Format:1.8
Date:Wed, 14 Aug 2019 17:38:26 +0200
Source:vdjtools
Binary:libvdjtools-java vdjtools
Architecture:source all
Version:1.2.1+git20190311-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Java Maintainers <pkg-java-maintainers@lists.alioth.debian.org>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
libvdjtools-java - Java library of vdjtools
vdjtools   - framework for post-analysis of B/T cell repertoires
Closes:903207
Changes:
vdjtools (1.2.1+git20190311-1) unstable; urgency=medium

  * Initial release (Closes: #903207)

    Upstream accepted my patch to extend the gradle search path
    for jars.

    Added new patch to find the commons-math3 library.
    https://github.com/mikessh/vdjtools/pull/128/commits/177014136a716416b3b697ce31df365472066225
Files:
a52de6b0d6243cb7b207ee65f5046c5d 2489 non-free/science optional vdjtools_1.2.1+git20190311-1.dsc
eaccf38643a4fc59beb0622916137fff 10191166 non-free/science optional vdjtools_1.2.1+git20190311.orig.tar.gz
6ba65e1aa8d4ef1751a14b444ef78104 5448 non-free/science optional vdjtools_1.2.1+git20190311-1.debian.tar.xz
21c343e86f2fe81f3a90e7cd54cd5491 12196328 non-free/science optional libvdjtools-java_1.2.1+git20190311-1_all.deb
eedfcc1ccea149f4f3330051fa2e843a 3348 non-free/science optional vdjtools_1.2.1+git20190311-1_all.deb
f9ea48c6be9d48f48aaa29dfc08ee2d5 13809 non-free/science optional vdjtools_1.2.1+git20190311-1_amd64.buildinfo
vdjtools_1.2.1+git20190311-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:vdjtools
Binary:libvdjtools-java, vdjtools
Architecture:all
Version:1.2.1+git20190311-1
Maintainer:Debian Java Maintainers <pkg-java-maintainers@lists.alioth.debian.org>
Uploaders:Steffen Moeller <moeller@debian.org>, Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Homepage:http://maven.apache.org
Standards-Version:4.4.0
Vcs-Browser:https://salsa.debian.org/java-team/vdjtools
Vcs-Git:https://salsa.debian.org/java-team/vdjtools.git
Testsuite:autopkgtest
Build-Depends:debhelper (>=11), default-jdk, gradle, gradle-debian-helper
Build-Depends-Indep:groovy, libcommons-cli-java (>=1.4), libcommons-io-java (>=2.6), libcommons-lang3-java (>=3.7), libgpars-groovy-java (>=1.2.1), libmaven-shade-plugin-java (>=3.1.0), libmilib-java (>=1.8.4), libcommons-math3-java, junit4
Package-List:libvdjtools-java deb non-free/science optional arch=all vdjtools deb non-free/science optional arch=all
Files:
eaccf38643a4fc59beb0622916137fff 10191166 vdjtools_1.2.1+git20190311.orig.tar.gz
6ba65e1aa8d4ef1751a14b444ef78104 5448 vdjtools_1.2.1+git20190311-1.debian.tar.xz
lintian 2.16.0~bpo9+1 check for vdjtools_1.2.1+git20190311-1.dsc (click to toggle)
README.source for vdjtools_1.2.1+git20190311-1.dsc (click to toggle)
Information about vdjtools
--------------------------

This package was debianized using the mh_make command
from the maven-debian-helper package.

The build system uses Maven but prevents it from downloading
anything from the Internet, making the build compliant with
the Debian policy.
control file for libvdjtools-java_1.2.1+git20190311-1_all.deb (click to toggle)
Package:libvdjtools-java
Source:vdjtools
Version:1.2.1+git20190311-1
Architecture:all
Maintainer:Debian Java Maintainers <pkg-java-maintainers@lists.alioth.debian.org>
Installed-Size:13475
Section:non-free/science
Priority:optional
Homepage:http://maven.apache.org
Description:
Java library of vdjtools
 The VDJtools are interacting with the R statistics environment
 to characterize the constitution of the immune repertoire
 of B and T cells.
 This package provides the Java library.
lintian 2.16.0~bpo9+1 check for libvdjtools-java_1.2.1+git20190311-1_all.deb (click to toggle)
contents of libvdjtools-java_1.2.1+git20190311-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2019-08-14 15:38 ./
drwxr-xr-x root/root         0 2019-08-14 15:38 ./usr/
drwxr-xr-x root/root         0 2019-08-14 15:38 ./usr/share/
drwxr-xr-x root/root         0 2019-08-14 15:38 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-08-14 15:38 ./usr/share/doc/libvdjtools-java/
-rw-r--r-- root/root       572 2019-08-14 15:38 ./usr/share/doc/libvdjtools-java/changelog.Debian.gz
-rw-r--r-- root/root      1748 2019-08-14 15:38 ./usr/share/doc/libvdjtools-java/copyright
drwxr-xr-x root/root         0 2019-08-14 15:38 ./usr/share/java/
-rw-r--r-- root/root  13787542 2019-08-14 15:38 ./usr/share/java/vdjtools-1.2.1.jar
control file for vdjtools_1.2.1+git20190311-1_all.deb (click to toggle)
Package:vdjtools
Version:1.2.1+git20190311-1
Architecture:all
Maintainer:Debian Java Maintainers <pkg-java-maintainers@lists.alioth.debian.org>
Installed-Size:13
Depends:libvdjtools-java
Recommends:r-cran-ape, r-cran-ggplot2, r-cran-gplots, r-cran-mass, r-cran-plotrix, r-cran-rcolorbrewer, r-cran-reshape, r-cran-reshape2, r-cran-scales, r-cran-gridbase, r-cran-gridextra, r-cran-circlize, r-cran-venndiagram, r-cran-ffield
Section:non-free/science
Priority:optional
Homepage:http://maven.apache.org
Description:
framework for post-analysis of B/T cell repertoires
 VDJtools is an open-source Java/Groovy-based framework designed
 to facilitate analysis of immune repertoire sequencing (RepSeq)
 data. VDJtools computes a wide set of statistics and is able to perform
 various forms of cross-sample analysis. Both comprehensive tabular
 output and publication-ready plots are provided.
 .
 The main aims of the VDJtools Project are:
 .
  * To ensure consistency between post-analysis methods and results
  * To save the time of bioinformaticians analyzing RepSeq data
  * To create an API framework facilitating development of new RepSeq
    analysis applications
  * To provide a simple enough command line tool so it could be used by
    immunologists and biologists with little computational background
lintian 2.16.0~bpo9+1 check for vdjtools_1.2.1+git20190311-1_all.deb (click to toggle)
W: vdjtools: binary-without-manpage usr/bin/vdjtools
contents of vdjtools_1.2.1+git20190311-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2019-08-14 15:38 ./
drwxr-xr-x root/root         0 2019-08-14 15:38 ./usr/
drwxr-xr-x root/root         0 2019-08-14 15:38 ./usr/bin/
-rwxr-xr-x root/root       216 2019-01-16 13:54 ./usr/bin/vdjtools
drwxr-xr-x root/root         0 2019-08-14 15:38 ./usr/share/
drwxr-xr-x root/root         0 2019-08-14 15:38 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-08-14 15:38 ./usr/share/doc/vdjtools/
-rw-r--r-- root/root       572 2019-08-14 15:38 ./usr/share/doc/vdjtools/changelog.Debian.gz
-rw-r--r-- root/root      1748 2019-08-14 15:38 ./usr/share/doc/vdjtools/copyright
drwxr-xr-x root/root         0 2019-08-14 15:38 ./usr/share/java/
lrwxrwxrwx root/root         0 2019-08-14 15:38 ./usr/share/java/vdjtools.jar -> vdjtools-1.2.1+git20190311.jar

Timestamp: 14.08.2019 / 17:01:26 (UTC)