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unanimity_3.1.0+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Thu, 18 Oct 2018 18:14:48 +0200
Source:unanimity
Binary:unanimity python-consensuscore2
Architecture:source amd64
Version:3.1.0+dfsg-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
python-consensuscore2 - generate consensus sequences for PacBio data -- Python 2
unanimity  - generate and process accurate consensus nucleotide sequences
Closes:847310
Changes:
unanimity (3.1.0+dfsg-1) unstable; urgency=medium

  * Initial release (Closes: #847310)
  * Python 2 version is needed to fix bug #852654 and update other
    packages to latest upstream version.
Files:
6bb3613ff60b70ab560ca495de25f964 2289 science optional unanimity_3.1.0+dfsg-1.dsc
5cc5ac95662af854cb5a82b0770197e3 3600692 science optional unanimity_3.1.0+dfsg.orig.tar.xz
e1c2486a7e397410881473ff9b0b2d2b 8772 science optional unanimity_3.1.0+dfsg-1.debian.tar.xz
58497cb245b0219a6b5986cc6ce20904 10889752 debug optional python-consensuscore2-dbgsym_3.1.0+dfsg-1_amd64.deb
daf6736c40bca518a1243016010d4e5e 612600 python optional python-consensuscore2_3.1.0+dfsg-1_amd64.deb
3bc9f85f080a44b9c356a927eba2032b 19417752 debug optional unanimity-dbgsym_3.1.0+dfsg-1_amd64.deb
49c84f0d0a8eeaaf2f5cf120ecf57d24 9195 science optional unanimity_3.1.0+dfsg-1_amd64.buildinfo
c94bb72e1e728aa3c2f8f54ed49b5a1b 981608 science optional unanimity_3.1.0+dfsg-1_amd64.deb
unanimity_3.1.0+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:unanimity
Binary:unanimity, python-consensuscore2
Architecture:any
Version:3.1.0+dfsg-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Afif Elghraoui <afif@debian.org>, Andreas Tille <tille@debian.org>
Homepage:https://github.com/PacificBiosciences/unanimity
Standards-Version:4.2.1
Vcs-Browser:https://salsa.debian.org/med-team/unanimity
Vcs-Git:https://salsa.debian.org/med-team/unanimity.git
Testsuite:autopkgtest-pkg-python
Build-Depends:debhelper (>=11~), dh-python, cmake, swig, python-setuptools, python-all-dev, python-numpy, libboost-dev, libhts-dev, libpbbam-dev, libpbcopper-dev, libseqan2-dev, pandoc
Package-List:python-consensuscore2 deb python optional arch=any unanimity deb science optional arch=any
Files:
5cc5ac95662af854cb5a82b0770197e3 3600692 unanimity_3.1.0+dfsg.orig.tar.xz
e1c2486a7e397410881473ff9b0b2d2b 8772 unanimity_3.1.0+dfsg-1.debian.tar.xz
lintian 2.5.108~bpo9+1 check for unanimity_3.1.0+dfsg-1.dsc (click to toggle)
W: unanimity source: python-foo-but-no-python3-foo python-consensuscore2
W: unanimity source: debian-watch-file-should-mangle-version line 4
README.source for unanimity_3.1.0+dfsg-1.dsc (click to toggle)
No README.source in this package
control file for python-consensuscore2-dbgsym_3.1.0+dfsg-1_amd64.deb (click to toggle)
Package:python-consensuscore2-dbgsym
Source:unanimity
Version:3.1.0+dfsg-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:11196
Depends:python-consensuscore2 (=3.1.0+dfsg-1)
Section:debug
Priority:optional
Description:
debug symbols for python-consensuscore2
Build-Ids:b4a7526b12a439cba5cd5782b1beb9b665b41b12
lintian 2.5.108~bpo9+1 check for python-consensuscore2-dbgsym_3.1.0+dfsg-1_amd64.deb (click to toggle)
contents of python-consensuscore2-dbgsym_3.1.0+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-10-18 16:14 ./
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/lib/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/lib/debug/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/lib/debug/.build-id/b4/
-rw-r--r-- root/root  11454416 2018-10-18 16:14 ./usr/lib/debug/.build-id/b4/a7526b12a439cba5cd5782b1beb9b665b41b12.debug
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/share/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/share/doc/
lrwxrwxrwx root/root         0 2018-10-18 16:14 ./usr/share/doc/python-consensuscore2-dbgsym -> python-consensuscore2
control file for unanimity_3.1.0+dfsg-1_amd64.deb (click to toggle)
Package:unanimity
Version:3.1.0+dfsg-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:3681
Depends:libc6 (>=2.14), libgcc1 (>=1:3.4), libpbbam0.19.0, libstdc++6 (>=7), libpbbam
Section:science
Priority:optional
Homepage:https://github.com/PacificBiosciences/unanimity
Description:
generate and process accurate consensus nucleotide sequences
 Unanimity provides a set of tools for consensus sequences from Pacific
 Biosciences sequencing data:
  * Circular Consensus Calling
    ccs takes multiple reads of the same SMRTbell sequence and combines them,
    employing a statistical model, to produce one high quality consensus
    sequence.
  * Minor variant caller
    juliet identifies minor variants from aligned ccs reads.
lintian 2.5.108~bpo9+1 check for unanimity_3.1.0+dfsg-1_amd64.deb (click to toggle)
contents of unanimity_3.1.0+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-10-18 16:14 ./
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/bin/
-rwxr-xr-x root/root   2081416 2018-10-18 16:14 ./usr/bin/ccs
-rwxr-xr-x root/root   1458000 2018-10-18 16:14 ./usr/bin/gcpp
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/share/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/share/doc/unanimity/
-rw-r--r-- root/root       783 2018-10-18 16:14 ./usr/share/doc/unanimity/JULIET.html
-rw-r--r-- root/root     17602 2018-10-18 16:14 ./usr/share/doc/unanimity/PBCCS.html
-rw-r--r-- root/root       227 2018-10-18 16:14 ./usr/share/doc/unanimity/changelog.Debian.gz
-rw-r--r-- root/root       975 2018-08-14 11:09 ./usr/share/doc/unanimity/changelog.gz
-rw-r--r-- root/root      8309 2018-10-18 16:14 ./usr/share/doc/unanimity/copyright
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/share/doc/unanimity/img/
-rw-r--r-- root/root    180047 2018-08-14 11:09 ./usr/share/doc/unanimity/img/juliet.png
-rw-r--r-- root/root      2408 2018-08-14 11:09 ./usr/share/doc/unanimity/img/unanimity.png
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/share/man/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/share/man/man1/
-rw-r--r-- root/root      1175 2018-10-18 16:14 ./usr/share/man/man1/ccs.1.gz
-rw-r--r-- root/root      2472 2018-10-18 16:14 ./usr/share/man/man1/gcpp.1.gz
control file for unanimity-dbgsym_3.1.0+dfsg-1_amd64.deb (click to toggle)
Package:unanimity-dbgsym
Source:unanimity
Version:3.1.0+dfsg-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:19923
Depends:unanimity (=3.1.0+dfsg-1)
Section:debug
Priority:optional
Description:
debug symbols for unanimity
Build-Ids:8bf416d6e41f1846b3645d4a2f8edc68e79d6950 d1fd86d7bf4beef5bb2fc772768795b610c55075
lintian 2.5.108~bpo9+1 check for unanimity-dbgsym_3.1.0+dfsg-1_amd64.deb (click to toggle)
contents of unanimity-dbgsym_3.1.0+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-10-18 16:14 ./
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/lib/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/lib/debug/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/lib/debug/.build-id/8b/
-rw-r--r-- root/root  11487056 2018-10-18 16:14 ./usr/lib/debug/.build-id/8b/f416d6e41f1846b3645d4a2f8edc68e79d6950.debug
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/lib/debug/.build-id/d1/
-rw-r--r-- root/root   8901784 2018-10-18 16:14 ./usr/lib/debug/.build-id/d1/fd86d7bf4beef5bb2fc772768795b610c55075.debug
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/share/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/share/doc/
lrwxrwxrwx root/root         0 2018-10-18 16:14 ./usr/share/doc/unanimity-dbgsym -> unanimity
control file for python-consensuscore2_3.1.0+dfsg-1_amd64.deb (click to toggle)
Package:python-consensuscore2
Source:unanimity
Version:3.1.0+dfsg-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:2545
Depends:libc6 (>=2.14), libgcc1 (>=1:3.4), libstdc++6 (>=6), python (<<2.8), python (>=2.7~), python-numpy (>=1:1.14.3), python-numpy-abi9, python:any (<<2.8), python:any (>=2.7~)
Section:python
Priority:optional
Homepage:https://github.com/PacificBiosciences/unanimity
Description:
generate consensus sequences for PacBio data -- Python 2
 ConsensusCore2 embodies core C++ routines underlying the Arrow HMM
 algorithm for PacBio multi-sequence consensus.  Arrow is the successor
 to the Quiver model---a CRF model that was embodied in the
 ConsensusCore C++ library. Compared to Quiver, the Arrow model is more
 statistically principled and easier and more robust to train.
 .
 This package installs the library for Python 2.
lintian 2.5.108~bpo9+1 check for python-consensuscore2_3.1.0+dfsg-1_amd64.deb (click to toggle)
contents of python-consensuscore2_3.1.0+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-10-18 16:14 ./
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/lib/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/lib/python2.7/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/lib/python2.7/dist-packages/ConsensusCore2-3.0.0.egg-info/
-rw-r--r-- root/root       304 2018-10-18 16:14 ./usr/lib/python2.7/dist-packages/ConsensusCore2-3.0.0.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2018-10-18 16:14 ./usr/lib/python2.7/dist-packages/ConsensusCore2-3.0.0.egg-info/dependency_links.txt
-rw-r--r-- root/root         0 2018-10-18 16:14 ./usr/lib/python2.7/dist-packages/ConsensusCore2-3.0.0.egg-info/requires.txt
-rw-r--r-- root/root        31 2018-10-18 16:14 ./usr/lib/python2.7/dist-packages/ConsensusCore2-3.0.0.egg-info/top_level.txt
-rw-r--r-- root/root      3432 2018-10-18 16:14 ./usr/lib/python2.7/dist-packages/ConsensusCore2.py
-rw-r--r-- root/root   2574472 2018-10-18 16:14 ./usr/lib/python2.7/dist-packages/_ConsensusCore2.x86_64-linux-gnu.so
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/share/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-10-18 16:14 ./usr/share/doc/python-consensuscore2/
-rw-r--r-- root/root       227 2018-10-18 16:14 ./usr/share/doc/python-consensuscore2/changelog.Debian.gz
-rw-r--r-- root/root       975 2018-08-14 11:09 ./usr/share/doc/python-consensuscore2/changelog.gz
-rw-r--r-- root/root      8309 2018-10-18 16:14 ./usr/share/doc/python-consensuscore2/copyright

Timestamp: 18.10.2018 / 17:08:27 (UTC)