Debian NEW package overview for twopaco
| twopaco_0.9.4+dfsg-1_amd64.changes (click to toggle) | |
|---|---|
| Format: | 1.8 |
| Date: | Sun, 20 Feb 2022 18:51:57 +0100 |
| Source: | twopaco |
| Binary: | twopaco twopaco-dbgsym |
| Architecture: | source amd64 |
| Version: | 0.9.4+dfsg-1 |
| Distribution: | unstable |
| Urgency: | medium |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Changed-By: | Andreas Tille <tille@debian.org> |
| Description: | twopaco - build the compacted de Bruijn graph from many complete genomes |
| Closes: | 1006180 |
| Changes: | twopaco (0.9.4+dfsg-1) unstable; urgency=medium * Initial release (Closes: #1006180) |
| Files: | e19854393ec35e382f76dc6d82e6d1eb 2022 science optional twopaco_0.9.4+dfsg-1.dsc 0fd49132b86fbd33b4ba1fb1fed8caa0 178848 science optional twopaco_0.9.4+dfsg.orig.tar.xz 7ba37a442f5f51923f32fc530081c183 5616 science optional twopaco_0.9.4+dfsg-1.debian.tar.xz c89b288cb1c560dd6dc1e2350c8e137d 6140680 debug optional twopaco-dbgsym_0.9.4+dfsg-1_amd64.deb fd5ff650d853238e796b9d96f044ada2 6934 science optional twopaco_0.9.4+dfsg-1_amd64.buildinfo bd67a2e2ea448461459b22881dcf0b6e 417316 science optional twopaco_0.9.4+dfsg-1_amd64.deb |
| twopaco_0.9.4+dfsg-1.dsc (click to toggle) | |
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| Format: | 3.0 (quilt) |
| Source: | twopaco |
| Binary: | twopaco |
| Architecture: | any |
| Version: | 0.9.4+dfsg-1 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Uploaders: | Andreas Tille <tille@debian.org> |
| Homepage: | https://github.com/medvedevgroup/TwoPaCo |
| Standards-Version: | 4.6.0 |
| Vcs-Browser: | https://salsa.debian.org/med-team/twopaco |
| Vcs-Git: | https://salsa.debian.org/med-team/twopaco.git |
| Testsuite: | autopkgtest |
| Build-Depends: | debhelper-compat (=13), cmake, libtbb-dev, libtclap-dev |
| Package-List: | twopaco deb science optional arch=any |
| Files: | 0fd49132b86fbd33b4ba1fb1fed8caa0 178848 twopaco_0.9.4+dfsg.orig.tar.xz 7ba37a442f5f51923f32fc530081c183 5616 twopaco_0.9.4+dfsg-1.debian.tar.xz |
| control file for twopaco_0.9.4+dfsg-1_amd64.deb (click to toggle) | |
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| Package: | twopaco |
| Version: | 0.9.4+dfsg-1 |
| Architecture: | amd64 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Installed-Size: | 1752 |
| Depends: | libc6 (>=2.29), libgcc-s1 (>=3.0), libstdc++6 (>=11), libtbb2 (>=2017~U7) |
| Section: | science |
| Priority: | optional |
| Homepage: | https://github.com/medvedevgroup/TwoPaCo |
| Description: | build the compacted de Bruijn graph from many complete genomes
TwoPaCo is an implementation of the algorithm described in the paper
"TwoPaCo: An efficient algorithm to build the compacted de Bruijn graph
from many complete genomes".
.
This package contains two programs:
.
twopaco: tool for direct construction of the compressed graph from
multiple complete genomes
graphdump: utility that turns output of twopaco into a text format |
| contents of twopaco_0.9.4+dfsg-1_amd64.deb (click to toggle) | |
|---|---|
drwxr-xr-x root/root 0 2022-02-20 17:51 ./ drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/ drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/bin/ -rwxr-xr-x root/root 208184 2022-02-20 17:51 ./usr/bin/graphdump -rwxr-xr-x root/root 1408752 2022-02-20 17:51 ./usr/bin/twopaco drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/share/ drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/share/doc/twopaco/ -rw-r--r-- root/root 160 2022-02-20 17:51 ./usr/share/doc/twopaco/changelog.Debian.gz -rw-r--r-- root/root 3922 2022-02-20 17:51 ./usr/share/doc/twopaco/copyright drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/share/doc/twopaco/examples/ -rw-r--r-- root/root 1239 2020-09-25 10:35 ./usr/share/doc/twopaco/examples/README.md -rw-r--r-- root/root 204 2022-02-20 17:51 ./usr/share/doc/twopaco/examples/example.dbg -rw-r--r-- root/root 1294 2022-02-20 17:51 ./usr/share/doc/twopaco/examples/example.dot -rw-r--r-- root/root 929 2020-09-25 10:35 ./usr/share/doc/twopaco/examples/example.fa -rw-r--r-- root/root 94943 2020-09-25 10:35 ./usr/share/doc/twopaco/examples/example.png -rw-r--r-- root/root 129 2020-09-25 10:35 ./usr/share/doc/twopaco/examples/example.seq -rw-r--r-- root/root 51089 2020-09-25 10:35 ./usr/share/doc/twopaco/examples/example_bandage.png -rw-r--r-- root/root 588 2020-09-25 10:35 ./usr/share/doc/twopaco/examples/example_fasta.fa -rw-r--r-- root/root 1115 2020-09-25 10:35 ./usr/share/doc/twopaco/examples/example_gfa1.gfa -rw-r--r-- root/root 1374 2020-09-25 10:35 ./usr/share/doc/twopaco/examples/example_gfa2.gfa drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/share/man/ drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/share/man/man1/ -rw-r--r-- root/root 703 2022-02-20 17:51 ./usr/share/man/man1/graphdump.1.gz -rw-r--r-- root/root 847 2022-02-20 17:51 ./usr/share/man/man1/twopaco.1.gz | |
| copyright of twopaco_0.9.4+dfsg-1_amd64.deb (click to toggle) | |
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Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: TwoPaCo
Source: https://github.com/medvedevgroup/TwoPaCo
Files-Excluded: src/common/tclap
Files: *
Copyright: 2016 I. Minkin and P. Medvedev.
License: BSD-4-clause
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions
are met:
.
1. Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
.
2. Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in
the documentation and/or other materials provided with the
distribution.
.
3. Neither the name of the copyright holder nor the names of its
contributors may be used to endorse or promote products derived
from this software without specific prior written permission.
.
4. Redistributions of any form whatsoever must retain the following
acknowledgment: 'This product includes the TwoPaCo software
developed by I. Minkin, S. Pham and P. Medvedev.'
.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED
TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
Files: src/common/ngramhashing/mersennetwister.h
Copyright: 1997 - 2002, Makoto Matsumoto and Takuji Nishimura,
2000 - 2003, Richard J. Wagner
License: BSD-3-clause
Comment: The original code included the following notice:
When you use this, send an email to: matumoto@math.keio.ac.jp
with an appropriate reference to your work.
.
It would be nice to CC: rjwagner@writeme.com and Cokus@math.washington.edu
when you write.
Files: debian/*
Copyright: 2022 Andreas Tille <tille@debian.org>
License: BSD-3-clause
License: BSD-3-clause
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions
are met:
.
1. Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
.
2. Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in the
documentation and/or other materials provided with the distribution.
.
3. The names of its contributors may not be used to endorse or promote
products derived from this software without specific prior written
permission.
.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
| |
| control file for twopaco-dbgsym_0.9.4+dfsg-1_amd64.deb (click to toggle) | |
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| Package: | twopaco-dbgsym |
| Source: | twopaco |
| Version: | 0.9.4+dfsg-1 |
| Auto-Built-Package: | debug-symbols |
| Architecture: | amd64 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Installed-Size: | 6413 |
| Depends: | twopaco (=0.9.4+dfsg-1) |
| Section: | debug |
| Priority: | optional |
| Description: | debug symbols for twopaco |
| Build-Ids: | 1d2f2ac406101c2f5341d60c95102ace77eec3f4 3d303c511d767da4be368a0e78b0ee06f496ec21 |
| contents of twopaco-dbgsym_0.9.4+dfsg-1_amd64.deb (click to toggle) | |
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drwxr-xr-x root/root 0 2022-02-20 17:51 ./ drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/ drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/lib/ drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/lib/debug/.build-id/1d/ -rw-r--r-- root/root 5658056 2022-02-20 17:51 ./usr/lib/debug/.build-id/1d/2f2ac406101c2f5341d60c95102ace77eec3f4.debug drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/lib/debug/.build-id/3d/ -rw-r--r-- root/root 815032 2022-02-20 17:51 ./usr/lib/debug/.build-id/3d/303c511d767da4be368a0e78b0ee06f496ec21.debug drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 78888 2022-02-20 17:51 ./usr/lib/debug/.dwz/x86_64-linux-gnu/twopaco.debug drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/share/ drwxr-xr-x root/root 0 2022-02-20 17:51 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-02-20 17:51 ./usr/share/doc/twopaco-dbgsym -> twopaco | |
| copyright of twopaco-dbgsym_0.9.4+dfsg-1_amd64.deb (click to toggle) | |
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WARNING: No copyright found, please check package manually. | |
Timestamp: 20.02.2022 / 19:01:09 (UTC)