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trnascan-se_1.3.1-1_amd64.changes (click to toggle)
Format:1.8
Date:Tue, 13 Dec 2016 23:35:18 -0800
Source:trnascan-se
Binary:trnascan-se trnascan-se-common
Architecture:source all amd64
Version:1.3.1-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Afif Elghraoui <afif@debian.org>
Description:
trnascan-se - detection of transfer RNA genes in genomic sequence
trnascan-se-common - detection of transfer RNA genes in genomic sequence (common files
Closes:803542
Changes:
trnascan-se (1.3.1-1) unstable; urgency=medium

  * Initial release (Closes: #803542)
Files:
abb3c3737ee43f6336d09ab2d54ea322 2060 non-free/science optional trnascan-se_1.3.1-1.dsc
714689121a1cf11c5d9c59561769c4d7 740960 non-free/science optional trnascan-se_1.3.1.orig.tar.gz
036277a6e6aaab50b052a33757dd8039 6272 non-free/science optional trnascan-se_1.3.1-1.debian.tar.xz
66c9a68f6e6363f445d5c2b5caa528bd 96282 non-free/science optional trnascan-se-common_1.3.1-1_all.deb
9880955a16a384e0a7e26ed0f25f29f2 398706 non-free/debug extra trnascan-se-dbgsym_1.3.1-1_amd64.deb
7c4c1d31afe0e69a0d960733712c55df 5104 non-free/science optional trnascan-se_1.3.1-1_amd64.buildinfo
54bb5ea880281fb2d4a3f183c9933d8d 146902 non-free/science optional trnascan-se_1.3.1-1_amd64.deb
trnascan-se_1.3.1-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:trnascan-se
Binary:trnascan-se, trnascan-se-common
Architecture:any all
Version:1.3.1-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Afif Elghraoui <afif@debian.org>
Homepage:http://lowelab.ucsc.edu/tRNAscan-SE
Standards-Version:3.9.8
Vcs-Browser:https://anonscm.debian.org/cgit/debian-med/trnascan-se.git
Vcs-Git:https://anonscm.debian.org/git/debian-med/trnascan-se.git
Testsuite:autopkgtest
Build-Depends:debhelper (>=9)
Package-List:trnascan-se deb non-free/science optional arch=any trnascan-se-common deb non-free/science optional arch=all
Files:
714689121a1cf11c5d9c59561769c4d7 740960 trnascan-se_1.3.1.orig.tar.gz
036277a6e6aaab50b052a33757dd8039 6272 trnascan-se_1.3.1-1.debian.tar.xz
lintian check for trnascan-se_1.3.1-1.dsc (click to toggle)
README.source for trnascan-se_1.3.1-1.dsc (click to toggle)
No README.source in this package
control file for trnascan-se-common_1.3.1-1_all.deb (click to toggle)
Package:trnascan-se-common
Source:trnascan-se
Version:1.3.1-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1161
Depends:perl
Section:non-free/science
Priority:optional
Homepage:http://lowelab.ucsc.edu/tRNAscan-SE
Description:
detection of transfer RNA genes in genomic sequence (common files)
 tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while
 giving less than one false positive per 15 gigabases. Two previously described
 tRNA detection programs are used as fast, first-pass prefilters to identify
 candidate tRNAs, which are then analyzed by a highly selective tRNA covariance
 model. This work represents a practical application of RNA covariance models,
 which are general, probabilistic secondary structure profiles based on
 stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s.
 Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as
 selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
 .
 This package contains the architecture-independent common files.
lintian check for trnascan-se-common_1.3.1-1_all.deb (click to toggle)
contents of trnascan-se-common_1.3.1-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2016-12-14 07:35 ./
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/share/
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/share/doc/trnascan-se-common/
-rw-r--r-- root/root       159 2016-12-14 07:35 ./usr/share/doc/trnascan-se-common/changelog.Debian.gz
-rw-r--r-- root/root      6679 2012-01-15 07:39 ./usr/share/doc/trnascan-se-common/changelog.gz
-rw-r--r-- root/root      2324 2016-12-14 07:21 ./usr/share/doc/trnascan-se-common/copyright
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/share/perl5/
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/share/perl5/tRNAscanSE/
-rw-r--r-- root/root    109745 2016-12-14 07:35 ./usr/share/perl5/tRNAscanSE/CM.pm
-rw-r--r-- root/root      2003 2016-12-14 07:35 ./usr/share/perl5/tRNAscanSE/Constants.pm
-rw-r--r-- root/root      8756 2016-12-14 07:35 ./usr/share/perl5/tRNAscanSE/Eufind.pm
-rw-r--r-- root/root      8047 2016-12-14 07:35 ./usr/share/perl5/tRNAscanSE/GeneticCode.pm
-rw-r--r-- root/root      1517 2016-12-14 07:35 ./usr/share/perl5/tRNAscanSE/LogFile.pm
-rw-r--r-- root/root     17603 2016-12-14 07:35 ./usr/share/perl5/tRNAscanSE/Options.pm
-rw-r--r-- root/root      6184 2016-12-14 07:35 ./usr/share/perl5/tRNAscanSE/SS.pm
-rw-r--r-- root/root     20644 2016-12-14 07:35 ./usr/share/perl5/tRNAscanSE/ScanResult.pm
-rw-r--r-- root/root     24845 2016-12-14 07:35 ./usr/share/perl5/tRNAscanSE/Sequence.pm
-rw-r--r-- root/root     11602 2016-12-14 07:35 ./usr/share/perl5/tRNAscanSE/Stats.pm
-rw-r--r-- root/root     12802 2016-12-14 07:35 ./usr/share/perl5/tRNAscanSE/Tscan.pm
-rw-r--r-- root/root      4575 2016-12-14 07:35 ./usr/share/perl5/tRNAscanSE/Utils.pm
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/share/tRNAscan-SE/
-rw-r--r-- root/root     14861 2016-12-14 07:35 ./usr/share/tRNAscan-SE/Archaea-BHB-noncan.cm
-rw-r--r-- root/root       224 2016-12-14 07:35 ./usr/share/tRNAscan-SE/Dsignal
-rw-r--r-- root/root     41083 2016-12-14 07:35 ./usr/share/tRNAscan-SE/ESELC.cm
-rw-r--r-- root/root     34522 2016-12-14 07:35 ./usr/share/tRNAscan-SE/ESELCinf-c.cm
-rw-r--r-- root/root     45507 2016-12-14 07:35 ./usr/share/tRNAscan-SE/PSELC.cm
-rw-r--r-- root/root     36969 2016-12-14 07:35 ./usr/share/tRNAscan-SE/PSELCinf-c.cm
-rw-r--r-- root/root       420 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TPCsignal
-rw-r--r-- root/root     47403 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNA2-arch.cm
-rw-r--r-- root/root     59411 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNA2-archns.cm
-rw-r--r-- root/root     47403 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNA2-bact.cm
-rw-r--r-- root/root     59411 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNA2-bactns.cm
-rw-r--r-- root/root     45507 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNA2-euk.cm
-rw-r--r-- root/root     57515 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNA2-eukns.cm
-rw-r--r-- root/root     45507 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNA2.cm
-rw-r--r-- root/root     57515 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNA2ns.cm
-rw-r--r-- root/root     20299 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNAinf-arch-3h-nc.cm
-rw-r--r-- root/root     12959 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNAinf-arch-5h-nc.cm
-rw-r--r-- root/root     37296 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNAinf-arch-c.cm
-rw-r--r-- root/root     33396 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNAinf-arch-ns-c.cm
-rw-r--r-- root/root     36924 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNAinf-bact-c.cm
-rw-r--r-- root/root     33400 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNAinf-bact-ns-c.cm
-rw-r--r-- root/root     38945 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNAinf-c.cm
-rw-r--r-- root/root     36615 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNAinf-euk-c.cm
-rw-r--r-- root/root     32761 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNAinf-euk-ns-c.cm
-rw-r--r-- root/root     35830 2016-12-14 07:35 ./usr/share/tRNAscan-SE/TRNAinf-ns-c.cm
-rw-r--r-- root/root       143 2016-12-14 07:35 ./usr/share/tRNAscan-SE/gcode.cilnuc
-rw-r--r-- root/root       143 2016-12-14 07:35 ./usr/share/tRNAscan-SE/gcode.echdmito
-rw-r--r-- root/root       146 2016-12-14 07:35 ./usr/share/tRNAscan-SE/gcode.invmito
-rw-r--r-- root/root       144 2016-12-14 07:35 ./usr/share/tRNAscan-SE/gcode.othmito
-rw-r--r-- root/root       144 2016-12-14 07:35 ./usr/share/tRNAscan-SE/gcode.vertmito
-rw-r--r-- root/root       139 2016-12-14 07:35 ./usr/share/tRNAscan-SE/gcode.ystmito
control file for trnascan-se-dbgsym_1.3.1-1_amd64.deb (click to toggle)
Package:trnascan-se-dbgsym
Source:trnascan-se
Version:1.3.1-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:460
Depends:trnascan-se (=1.3.1-1)
Section:non-free/debug
Priority:extra
Homepage:http://lowelab.ucsc.edu/tRNAscan-SE
Description:
Debug symbols for trnascan-se
Auto-Built-Package:debug-symbols
Build-Ids:9eb2bc388b55912fbadae36a1d1417e221b7afbf b893aee7b308b1d9bba79b997eab9fb8907eaee1 dac0193bff0e0657a20ac787acd0e0cbc35f6c71 fb10fd140a5b074993f80d04b62053be5ce83d37
lintian check for trnascan-se-dbgsym_1.3.1-1_amd64.deb (click to toggle)
contents of trnascan-se-dbgsym_1.3.1-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2016-12-14 07:35 ./
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/lib/
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/lib/debug/
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/lib/debug/.build-id/9e/
-rw-r--r-- root/root     96576 2016-12-14 07:35 ./usr/lib/debug/.build-id/9e/b2bc388b55912fbadae36a1d1417e221b7afbf.debug
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/lib/debug/.build-id/b8/
-rw-r--r-- root/root     23080 2016-12-14 07:35 ./usr/lib/debug/.build-id/b8/93aee7b308b1d9bba79b997eab9fb8907eaee1.debug
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/lib/debug/.build-id/da/
-rw-r--r-- root/root    168912 2016-12-14 07:35 ./usr/lib/debug/.build-id/da/c0193bff0e0657a20ac787acd0e0cbc35f6c71.debug
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/lib/debug/.build-id/fb/
-rw-r--r-- root/root    167512 2016-12-14 07:35 ./usr/lib/debug/.build-id/fb/10fd140a5b074993f80d04b62053be5ce83d37.debug
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/share/
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/share/doc/
lrwxrwxrwx root/root         0 2016-12-14 07:35 ./usr/share/doc/trnascan-se-dbgsym -> trnascan-se
control file for trnascan-se_1.3.1-1_amd64.deb (click to toggle)
Package:trnascan-se
Version:1.3.1-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:572
Depends:libc6 (>=2.14), perl:any, trnascan-se-common (=1.3.1-1)
Suggests:infernal (>= 1.0)
Section:non-free/science
Priority:optional
Homepage:http://lowelab.ucsc.edu/tRNAscan-SE
Description:
detection of transfer RNA genes in genomic sequence
 tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while
 giving less than one false positive per 15 gigabases. Two previously described
 tRNA detection programs are used as fast, first-pass prefilters to identify
 candidate tRNAs, which are then analyzed by a highly selective tRNA covariance
 model. This work represents a practical application of RNA covariance models,
 which are general, probabilistic secondary structure profiles based on
 stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s.
 Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as
 selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
lintian check for trnascan-se_1.3.1-1_amd64.deb (click to toggle)
contents of trnascan-se_1.3.1-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2016-12-14 07:35 ./
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/bin/
-rwxr-xr-x root/root    181464 2016-12-14 07:35 ./usr/bin/covels-SE
-rwxr-xr-x root/root    177208 2016-12-14 07:35 ./usr/bin/coves-SE
-rwxr-xr-x root/root    100600 2016-12-14 07:35 ./usr/bin/eufindtRNA
-rwxr-xr-x root/root     44859 2016-12-14 07:35 ./usr/bin/tRNAscan-SE
-rwxr-xr-x root/root     23496 2016-12-14 07:35 ./usr/bin/trnascan-1.4
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/share/
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/share/doc/trnascan-se/
-rw-r--r-- root/root     16387 2008-06-04 10:30 ./usr/share/doc/trnascan-se/MANUAL.gz
-rw-r--r-- root/root      2235 2012-01-15 07:17 ./usr/share/doc/trnascan-se/README.gz
-rw-r--r-- root/root       159 2016-12-14 07:35 ./usr/share/doc/trnascan-se/changelog.Debian.gz
-rw-r--r-- root/root      6679 2012-01-15 07:39 ./usr/share/doc/trnascan-se/changelog.gz
-rw-r--r-- root/root      2324 2016-12-14 07:21 ./usr/share/doc/trnascan-se/copyright
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/share/man/
drwxr-xr-x root/root         0 2016-12-14 07:35 ./usr/share/man/man1/
-rw-r--r-- root/root       801 2016-12-14 07:35 ./usr/share/man/man1/covels-SE.1.gz
-rw-r--r-- root/root       801 2016-12-14 07:35 ./usr/share/man/man1/covels.1.gz
-rw-r--r-- root/root       352 2016-12-14 07:35 ./usr/share/man/man1/coves-SE.1.gz
-rw-r--r-- root/root       352 2016-12-14 07:35 ./usr/share/man/man1/coves.1.gz
-rw-r--r-- root/root       322 2016-12-14 07:35 ./usr/share/man/man1/eufindtRNA.1.gz
-rw-r--r-- root/root      7876 2016-12-14 07:35 ./usr/share/man/man1/tRNAscan-SE.1.gz
-rw-r--r-- root/root       193 2016-12-14 07:35 ./usr/share/man/man1/trnascan-1.4.1.gz

Timestamp: 14.12.2016 / 10:01:03 (UTC)