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trim-galore_0.6.4-1_amd64.changes (click to toggle)
Format:1.8
Date:Mon, 05 Aug 2019 15:26:15 +0200
Source:trim-galore
Binary:trim-galore
Architecture:source all
Version:0.6.4-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
trim-galore - automate quality and adapter trimming for DNA sequencing
Closes:933975
Changes:
trim-galore (0.6.4-1) unstable; urgency=medium

  * Initial release (Closes: #933975)

    TODO: Write test script
          Deal with documentation
Files:
37d184f1b1daf8ad7d3293cac074bb8b 2006 science optional trim-galore_0.6.4-1.dsc
3beb267468ab1ef0fc7f652fd81fd59f 26827580 science optional trim-galore_0.6.4.orig.tar.gz
135230b6595eccf0d9d239de7aa502ba 2412 science optional trim-galore_0.6.4-1.debian.tar.xz
0a0b69b48a181e8666aaf35c05edddcc 34748 science optional trim-galore_0.6.4-1_all.deb
f8d9b3560ad858099090e7b58bb5c8fa 5760 science optional trim-galore_0.6.4-1_amd64.buildinfo
trim-galore_0.6.4-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:trim-galore
Binary:trim-galore
Architecture:all
Version:0.6.4-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Steffen Moeller <moeller@debian.org>
Homepage:https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/
Standards-Version:4.4.0
Vcs-Browser:https://salsa.debian.org/med-team/trim-galore
Vcs-Git:https://salsa.debian.org/med-team/trim-galore.git
Build-Depends:debhelper (>=11)
Package-List:trim-galore deb science optional arch=all
Files:
3beb267468ab1ef0fc7f652fd81fd59f 26827580 trim-galore_0.6.4.orig.tar.gz
135230b6595eccf0d9d239de7aa502ba 2412 trim-galore_0.6.4-1.debian.tar.xz
lintian 2.16.0~bpo9+1 check for trim-galore_0.6.4-1.dsc (click to toggle)
README.source for trim-galore_0.6.4-1.dsc (click to toggle)
No README.source in this package
control file for trim-galore_0.6.4-1_all.deb (click to toggle)
Package:trim-galore
Version:0.6.4-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:140
Depends:perl, cutadapt
Recommends:fastqc
Section:science
Priority:optional
Homepage:https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/
Description:
automate quality and adapter trimming for DNA sequencing
 Trim Galore! is a wrapper script to automate quality and adapter trimming
 as well as quality control, with some added functionality to remove
 biased methylation positions for RRBS sequence files (for directional,
 non-directional (or paired-end) sequencing). It's main features are:
  * For adapter trimming, Trim Galore! uses the first 13 bp of Illumina
    standard adapters ('AGATCGGAAGAGC') by default (suitable for both ends
    of paired-end libraries), but accepts other adapter sequence, too
  * For MspI-digested RRBS libraries, Trim Galore! performs quality and
    adapter trimming in two subsequent steps. This allows it to remove
    2 additional bases that contain a cytosine which was artificially
    introduced in the end-repair step during the library preparation
  * For any kind of FastQ file other than MspI-digested RRBS, Trim
    Galore! can perform single-pass adapter- and quality trimming
  * The Phred quality of basecalls and the stringency for adapter removal
    can be specified individually
  * Trim Galore! can remove sequences if they become too short during
    the trimming process. For paired-end files Trim Galore! removes entire
    sequence pairs if one (or both) of the two reads became shorter than
    the set length cutoff. Reads of a read-pair that are longer than a
    given threshold but for which the partner read has become too short
    can optionally be written out to single-end files. This ensures that
    the information of a read pair is not lost entirely if only one read
    is of good quality
  * Trim Galore! can trim paired-end files by 1 additional bp from the 3'
    end of all reads to avoid problems with invalid alignments with Bowtie 1
  * Trim Galore! accepts and produces standard or gzip compressed FastQ files
  * FastQC can optionally be run on the resulting output files once
    trimming has completed
lintian 2.16.0~bpo9+1 check for trim-galore_0.6.4-1_all.deb (click to toggle)
W: trim-galore: binary-without-manpage usr/bin/trim_galore
contents of trim-galore_0.6.4-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2019-08-05 13:26 ./
drwxr-xr-x root/root         0 2019-08-05 13:26 ./usr/
drwxr-xr-x root/root         0 2019-08-05 13:26 ./usr/bin/
-rwxr-xr-x root/root    124322 2019-08-05 13:26 ./usr/bin/trim_galore
drwxr-xr-x root/root         0 2019-08-05 13:26 ./usr/share/
drwxr-xr-x root/root         0 2019-08-05 13:26 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-08-05 13:26 ./usr/share/doc/trim-galore/
-rw-r--r-- root/root       203 2019-08-05 13:26 ./usr/share/doc/trim-galore/changelog.Debian.gz
-rw-r--r-- root/root      7386 2019-08-05 13:26 ./usr/share/doc/trim-galore/changelog.gz
-rw-r--r-- root/root      1121 2019-08-05 13:26 ./usr/share/doc/trim-galore/copyright

Timestamp: 06.08.2019 / 00:01:35 (UTC)