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trf_4.09.1-1_amd64.changes (click to toggle)
Format:1.8
Date:Mon, 29 Jun 2020 13:26:43 +0200
Source:trf
Binary:trf trf-dbgsym trf-examples
Architecture:source amd64 all
Version:4.09.1-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
trf        - locate and display tandem repeats in DNA sequences
trf-examples - locate and display tandem repeats in DNA sequences (examples)
Closes:963950
Changes:
trf (4.09.1-1) unstable; urgency=medium

  * Initial release (Closes: #963950)
Files:
f8ac86b1fef10e44c3ab017a318537a5 1953 science optional trf_4.09.1-1.dsc
8569300f69776b65e22ad12caa682ab8 274103 science optional trf_4.09.1.orig.tar.gz
6d3d54d23d2925222e734efaccee4e32 14304 science optional trf_4.09.1-1.debian.tar.xz
b5023865c48b65bbe01e94189b373101 77708 debug optional trf-dbgsym_4.09.1-1_amd64.deb
1631ec81632fec14ffa8a0e99eb80781 18640 science optional trf-examples_4.09.1-1_all.deb
d38d5c2dc81dfae2bb52d6c3359bd911 5956 science optional trf_4.09.1-1_amd64.buildinfo
0f3a9526e6c79962a4a0dd85e8d1349c 55544 science optional trf_4.09.1-1_amd64.deb
trf_4.09.1-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:trf
Binary:trf, trf-examples
Architecture:any all
Version:4.09.1-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Andreas Tille <tille@debian.org>
Homepage:https://tandem.bu.edu/trf/trf.html
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/med-team/trf
Vcs-Git:https://salsa.debian.org/med-team/trf.git
Build-Depends:debhelper-compat (=13)
Package-List:trf deb science optional arch=any trf-examples deb science optional arch=all
Files:
8569300f69776b65e22ad12caa682ab8 274103 trf_4.09.1.orig.tar.gz
6d3d54d23d2925222e734efaccee4e32 14304 trf_4.09.1-1.debian.tar.xz
lintian 2.79.0~bpo10+1 check for trf_4.09.1-1.dsc (click to toggle)
README.source for trf_4.09.1-1.dsc (click to toggle)
No README.source in this package
control file for trf_4.09.1-1_amd64.deb (click to toggle)
Package:trf
Version:4.09.1-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:159
Depends:libc6 (>=2.29)
Section:science
Priority:optional
Homepage:https://tandem.bu.edu/trf/trf.html
Description:
locate and display tandem repeats in DNA sequences
 A tandem repeat in DNA is two or more adjacent, approximate copies of a
 pattern of nucleotides. Tandem Repeats Finder is a program to locate and
 display tandem repeats in DNA sequences. In order to use the program,
 the user submits a sequence in FASTA format. There is no need to specify
 the pattern, the size of the pattern or any other parameter. The output
 consists of two files: a repeat table file and an alignment file. The
 repeat table, viewable in a web browser, contains information about each
 repeat, including its location, size, number of copies and nucleotide
 content. Clicking on the location indices for one of the table entries
 opens a second browser page that shows an alignment of the copies
 against a consensus pattern. The program is very fast, analyzing
 sequences on the order of .5Mb in just a few seconds. Submitted
 sequences may be of arbitrary length. Repeats with pattern size in the
 range from 1 to 2000 bases are detected.
lintian 2.79.0~bpo10+1 check for trf_4.09.1-1_amd64.deb (click to toggle)
contents of trf_4.09.1-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-29 11:26 ./
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/bin/
-rwxr-xr-x root/root    109040 2020-06-29 11:26 ./usr/bin/trf
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/share/
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/share/doc/trf/
-rw-r--r-- root/root       163 2020-06-29 11:26 ./usr/share/doc/trf/README.md
-rw-r--r-- root/root       153 2020-06-29 11:26 ./usr/share/doc/trf/changelog.Debian.gz
-rw-r--r-- root/root      4799 2020-06-20 03:45 ./usr/share/doc/trf/changelog.gz
-rw-r--r-- root/root     35686 2020-06-29 11:26 ./usr/share/doc/trf/copyright
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/share/man/
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/share/man/man1/
-rw-r--r-- root/root      1006 2020-06-29 11:26 ./usr/share/man/man1/trf.1.gz
control file for trf-dbgsym_4.09.1-1_amd64.deb (click to toggle)
Package:trf-dbgsym
Source:trf
Version:4.09.1-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:95
Depends:trf (=4.09.1-1)
Section:debug
Priority:optional
Description:
debug symbols for trf
Build-Ids:9aac6dd099048c474160417d59fdcdc5d9cc475b
lintian 2.79.0~bpo10+1 check for trf-dbgsym_4.09.1-1_amd64.deb (click to toggle)
contents of trf-dbgsym_4.09.1-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-29 11:26 ./
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/lib/
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/lib/debug/.build-id/9a/
-rw-r--r-- root/root     86312 2020-06-29 11:26 ./usr/lib/debug/.build-id/9a/ac6dd099048c474160417d59fdcdc5d9cc475b.debug
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/share/
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-06-29 11:26 ./usr/share/doc/trf-dbgsym -> trf
control file for trf-examples_4.09.1-1_all.deb (click to toggle)
Package:trf-examples
Source:trf
Version:4.09.1-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:137
Enhances:trf
Section:science
Priority:optional
Homepage:https://tandem.bu.edu/trf/trf.html
Description:
locate and display tandem repeats in DNA sequences (examples)
 A tandem repeat in DNA is two or more adjacent, approximate copies of a
 pattern of nucleotides. Tandem Repeats Finder is a program to locate and
 display tandem repeats in DNA sequences. In order to use the program,
 the user submits a sequence in FASTA format. There is no need to specify
 the pattern, the size of the pattern or any other parameter. The output
 consists of two files: a repeat table file and an alignment file. The
 repeat table, viewable in a web browser, contains information about each
 repeat, including its location, size, number of copies and nucleotide
 content. Clicking on the location indices for one of the table entries
 opens a second browser page that shows an alignment of the copies
 against a consensus pattern. The program is very fast, analyzing
 sequences on the order of .5Mb in just a few seconds. Submitted
 sequences may be of arbitrary length. Repeats with pattern size in the
 range from 1 to 2000 bases are detected.
 .
 This package contains the example data for trf.
lintian 2.79.0~bpo10+1 check for trf-examples_4.09.1-1_all.deb (click to toggle)
contents of trf-examples_4.09.1-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-29 11:26 ./
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/share/
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/share/doc/trf/
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/share/doc/trf/examples/
-rw-r--r-- root/root     54341 2020-06-20 03:45 ./usr/share/doc/trf/examples/test_seqs.fasta.gz
-rw-r--r-- root/root     34176 2020-06-20 03:45 ./usr/share/doc/trf/examples/test_seqs.txt.gz
drwxr-xr-x root/root         0 2020-06-29 11:26 ./usr/share/doc/trf-examples/
-rw-r--r-- root/root       153 2020-06-29 11:26 ./usr/share/doc/trf-examples/changelog.Debian.gz
-rw-r--r-- root/root      4799 2020-06-20 03:45 ./usr/share/doc/trf-examples/changelog.gz
-rw-r--r-- root/root     35686 2020-06-29 11:26 ./usr/share/doc/trf-examples/copyright

Timestamp: 29.06.2020 / 12:01:12 (UTC)