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tracetuner_3.0.6~beta+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Fri, 26 Oct 2018 20:36:33 +0200
Source:tracetuner
Binary:tracetuner
Architecture:source amd64
Version:3.0.6~beta+dfsg-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
tracetuner - interpretation of DNA Sanger sequencing data
Closes:911850
Changes:
tracetuner (3.0.6~beta+dfsg-1) unstable; urgency=medium

  * Team upload
  * Initial release (Closes: #911850)
Files:
5d6789df86dd892e34ca63c3e37bda73 2044 science optional tracetuner_3.0.6~beta+dfsg-1.dsc
1662eaa5444391d0e824ee565ee3fa29 385388 science optional tracetuner_3.0.6~beta+dfsg.orig.tar.xz
994f04fe05a3455373946856406f6f9c 7476 science optional tracetuner_3.0.6~beta+dfsg-1.debian.tar.xz
6fae808c6184ffbb369bbca727bb5598 1252344 debug optional tracetuner-dbgsym_3.0.6~beta+dfsg-1_amd64.deb
2e9657b2b819642b70008e2c88419e20 5951 science optional tracetuner_3.0.6~beta+dfsg-1_amd64.buildinfo
b52c2e878e283c9184a108180e73be3f 347416 science optional tracetuner_3.0.6~beta+dfsg-1_amd64.deb
tracetuner_3.0.6~beta+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:tracetuner
Binary:tracetuner
Architecture:any
Version:3.0.6~beta+dfsg-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Steffen Moeller <moeller@debian.org>
Homepage:https://sourceforge.net/projects/tracetuner/
Standards-Version:4.2.1
Vcs-Browser:https://salsa.debian.org/debian/tracetuner
Vcs-Git:https://salsa.debian.org/debian/tracetuner.git
Build-Depends:debhelper (>=11), zlib1g-dev
Package-List:tracetuner deb science optional arch=any
Files:
1662eaa5444391d0e824ee565ee3fa29 385388 tracetuner_3.0.6~beta+dfsg.orig.tar.xz
994f04fe05a3455373946856406f6f9c 7476 tracetuner_3.0.6~beta+dfsg-1.debian.tar.xz
lintian 2.5.110~bpo9+1 check for tracetuner_3.0.6~beta+dfsg-1.dsc (click to toggle)
W: tracetuner source: debian-watch-file-should-mangle-version line 4
README.source for tracetuner_3.0.6~beta+dfsg-1.dsc (click to toggle)
tracetuner for Debian
---------------------

The CVS directories have been removed from the source tree.

The source codes for the .jar file that provides the GUI and also for
the PDF that provides the documentation are not redistributed in the
default release on SourceForge.

Help in retrieving these historic documents is appreciated.  To help
preserving our scientific past, I decided against removing these files
and kept them in the source tree.

 -- Steffen Moeller <moeller@debian.org>  Wed, 24 Oct 2018 20:16:03 +0200

control file for tracetuner-dbgsym_3.0.6~beta+dfsg-1_amd64.deb (click to toggle)
Package:tracetuner-dbgsym
Source:tracetuner
Version:3.0.6~beta+dfsg-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1339
Depends:tracetuner (=3.0.6~beta+dfsg-1)
Section:debug
Priority:optional
Description:
debug symbols for tracetuner
Build-Ids:1f51bfc2df5a02f32a7e6292df1816fdf0e394ad 48010f30abd7bbe7876c6f0056fdca45683c9708 4dea07e9f7e438bac4d1f40fc64f90b34fe3b2c0 92729df1b0ed2c25caf2bcbb32fead1e5e842374 c00c69ede876e33deee3787e80d7d16ee37ed92e eaa97b3440d6c209c125f65c6896f726792938ef fffedbfbf5b2892241284bbaadc3dee11d53f84f
lintian 2.5.110~bpo9+1 check for tracetuner-dbgsym_3.0.6~beta+dfsg-1_amd64.deb (click to toggle)
contents of tracetuner-dbgsym_3.0.6~beta+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-10-26 18:36 ./
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/lib/
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/lib/debug/
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/lib/debug/.build-id/1f/
-rw-r--r-- root/root    426264 2018-10-26 18:36 ./usr/lib/debug/.build-id/1f/51bfc2df5a02f32a7e6292df1816fdf0e394ad.debug
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/lib/debug/.build-id/48/
-rw-r--r-- root/root    427680 2018-10-26 18:36 ./usr/lib/debug/.build-id/48/010f30abd7bbe7876c6f0056fdca45683c9708.debug
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/lib/debug/.build-id/4d/
-rw-r--r-- root/root     40480 2018-10-26 18:36 ./usr/lib/debug/.build-id/4d/ea07e9f7e438bac4d1f40fc64f90b34fe3b2c0.debug
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/lib/debug/.build-id/92/
-rw-r--r-- root/root     20144 2018-10-26 18:36 ./usr/lib/debug/.build-id/92/729df1b0ed2c25caf2bcbb32fead1e5e842374.debug
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/lib/debug/.build-id/c0/
-rw-r--r-- root/root     18576 2018-10-26 18:36 ./usr/lib/debug/.build-id/c0/0c69ede876e33deee3787e80d7d16ee37ed92e.debug
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/lib/debug/.build-id/ea/
-rw-r--r-- root/root    400256 2018-10-26 18:36 ./usr/lib/debug/.build-id/ea/a97b3440d6c209c125f65c6896f726792938ef.debug
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/lib/debug/.build-id/ff/
-rw-r--r-- root/root     17808 2018-10-26 18:36 ./usr/lib/debug/.build-id/ff/fedbfbf5b2892241284bbaadc3dee11d53f84f.debug
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/share/
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/share/doc/
lrwxrwxrwx root/root         0 2018-10-26 18:36 ./usr/share/doc/tracetuner-dbgsym -> tracetuner
control file for tracetuner_3.0.6~beta+dfsg-1_amd64.deb (click to toggle)
Package:tracetuner
Version:3.0.6~beta+dfsg-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1642
Depends:libc6 (>=2.14), zlib1g (>=1:1.1.4)
Section:science
Priority:optional
Homepage:https://sourceforge.net/projects/tracetuner/
Description:
interpretation of DNA Sanger sequencing data
 Tracetuner is a tool for base and quality calling of trace files from
 DNA sequencing instruments.
 Traditional DNA sequencing yields curves from four different
 channels or light frequencies that human or (preferably) machines
 are interpreting to determine the actual base (A,C,G or T) and
 the confidence with which this is determined.
 .
 TraceTuner is a DNA sequencing quality value, base calling and trace
 processing software application originally developed by Paracel,
 Inc. While providing a flexible interface and capability to adopt
 the "pure" base calls produced by Phred, KB or any other "original"
 caller, it offers competitive features not currently available in other
 tools, such as customized calibration of quality values, advanced
 heterozygote and mixed base calling and deconvolving the "mixed"
 electropherograms resulting from the presence of indels into a couple of
 "pure" electropherograms.
 .
 Later versions
 Previous versions of TraceTuner were used by
 Celera Genomics to process over 27 million reads from both Drosophila
 and human genome projects.
 In 2000, Applied Biosystems
 bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the
 customers of these capillary electrophoresis sequencers.
 its SNP detection and genotyping software product SeqScape.
 .
 TraceTuner
 implements an advanced peak processing technology for resolving
 overlapping peaks of the same dye color into individual, or "intrinsic"
 peaks.
 TraceTuner, for its support of mixed base calling, have been used by the
 research community, the private biotech sector, and the U.S. government
 as components of different variant detection, genotyping and forensic
 software applications (e.g. Applied Biosystems SeqScape, Paracel Genome
 Assembler, MTexpert, etc.).
 .
 This technology was protected by US Patent #6,681,186. Currently,
 TraceTuner is an open source software, which has been used by J. Craig
 Venter Institute's DNA Sequencing and Resequencing pipelines.
 .
 This package prepares an important piece of human history to be used
 with new data on new machines or to revisit older observations..
lintian 2.5.110~bpo9+1 check for tracetuner_3.0.6~beta+dfsg-1_amd64.deb (click to toggle)
W: tracetuner: binary-without-manpage usr/bin/checkbc
W: tracetuner: binary-without-manpage usr/bin/checkbcphd
W: tracetuner: binary-without-manpage usr/bin/checkqv
W: tracetuner: binary-without-manpage usr/bin/checkqvphd
W: tracetuner: binary-without-manpage usr/bin/lut
contents of tracetuner_3.0.6~beta+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-10-26 18:36 ./
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/bin/
-rwxr-xr-x root/root     18432 2018-10-26 18:36 ./usr/bin/checkbc
-rwxr-xr-x root/root     18424 2018-10-26 18:36 ./usr/bin/checkbcphd
-rwxr-xr-x root/root    499120 2018-10-26 18:36 ./usr/bin/checkqv
-rwxr-xr-x root/root     18424 2018-10-26 18:36 ./usr/bin/checkqvphd
-rwxr-xr-x root/root     34808 2018-10-26 18:36 ./usr/bin/lut
-rwxr-xr-x root/root    519608 2018-10-26 18:36 ./usr/bin/train
-rwxr-xr-x root/root    548280 2018-10-26 18:36 ./usr/bin/ttuner
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/share/
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/share/doc/tracetuner/
-rw-r--r-- root/root       497 2018-10-26 18:36 ./usr/share/doc/tracetuner/README.Debian
-rw-r--r-- root/root      1671 2008-11-28 23:00 ./usr/share/doc/tracetuner/README.gz
-rw-r--r-- root/root      1625 2009-06-30 13:16 ./usr/share/doc/tracetuner/RELEASE_NOTES.gz
-rw-r--r-- root/root       176 2018-10-26 18:36 ./usr/share/doc/tracetuner/changelog.Debian.gz
-rw-r--r-- root/root      1157 2018-10-26 18:36 ./usr/share/doc/tracetuner/copyright
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/share/man/
drwxr-xr-x root/root         0 2018-10-26 18:36 ./usr/share/man/man1/
-rw-r--r-- root/root      1059 2018-10-26 18:36 ./usr/share/man/man1/train.1.gz
-rw-r--r-- root/root       961 2018-10-26 18:36 ./usr/share/man/man1/trainphd.1.gz
-rw-r--r-- root/root      1341 2018-10-26 18:36 ./usr/share/man/man1/ttuner.1.gz

Timestamp: 26.10.2018 / 19:06:16 (UTC)