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tombo_1.5.1-1_amd64.changes (click to toggle)
Format:1.8
Date:Mon, 15 Jun 2020 11:13:59 +0200
Source:tombo
Binary:tombo tombo-dbgsym tombo-doc
Architecture:source amd64 all
Version:1.5.1-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
tombo      - identification of modified nucleotides from raw nanopore sequenci
tombo-doc  - identification of modified nucleotides from raw nanopore sequenci
Closes:963596
Changes:
tombo (1.5.1-1) unstable; urgency=medium

  * Initial release (Closes: #963596)
Files:
34cc7b1c9c07d747e3e0efdb8e437196 2292 science optional tombo_1.5.1-1.dsc
3709e4f4d6f4c58ec2d6ae216059929c 22294835 science optional tombo_1.5.1.orig.tar.gz
0d120575dba5d18be642b254236bf72c 6216 science optional tombo_1.5.1-1.debian.tar.xz
29288d8077b694c5f92ca8a6b67c48bb 478924 debug optional tombo-dbgsym_1.5.1-1_amd64.deb
e975d96ce2d9f76b05805cb082493dce 21732832 doc optional tombo-doc_1.5.1-1_all.deb
9c3aaccf5771d4c00686f6591c362dac 8466 science optional tombo_1.5.1-1_amd64.buildinfo
024e624d957c6c11ffa0d6c95f9adfa0 451616 science optional tombo_1.5.1-1_amd64.deb
tombo_1.5.1-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:tombo
Binary:tombo, tombo-doc
Architecture:any all
Version:1.5.1-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Andreas Tille <tille@debian.org>
Homepage:https://github.com/nanoporetech/tombo
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/med-team/tombo
Vcs-Git:https://salsa.debian.org/med-team/tombo.git
Testsuite:autopkgtest
Build-Depends:debhelper-compat (=13), dh-python, python3-all-dev, python3-setuptools, cython3, sphinx-doc, python3-sphinx, python3-sphinx-rtd-theme, python3-sphinx-argparse, libjs-mathjax, python3-h5py<!nocheck>, python3-mappy<!nocheck>, python3-numpy<!nocheck>, python3-scipy<!nocheck>, python3-tqdm<!nocheck>, python3-nose2<!nocheck>
Package-List:tombo deb science optional arch=any tombo-doc deb doc optional arch=all
Files:
3709e4f4d6f4c58ec2d6ae216059929c 22294835 tombo_1.5.1.orig.tar.gz
0d120575dba5d18be642b254236bf72c 6216 tombo_1.5.1-1.debian.tar.xz
lintian 2.79.0~bpo10+1 check for tombo_1.5.1-1.dsc (click to toggle)
README.source for tombo_1.5.1-1.dsc (click to toggle)
No README.source in this package
control file for tombo_1.5.1-1_amd64.deb (click to toggle)
Package:tombo
Version:1.5.1-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1479
Depends:libc6 (>=2.29), cython3, python3 (<<3.9), python3 (>=3.8~), python3-h5py, python3-mappy, python3-numpy, python3-pkg-resources, python3-scipy, python3-tqdm, python3:any
Recommends:python3-pyfaidx, python3-rpy2
Section:science
Priority:optional
Homepage:https://github.com/nanoporetech/tombo
Description:
identification of modified nucleotides from raw nanopore sequencing data
 Tombo is a suite of tools primarily for the identification of modified
 nucleotides from nanopore sequencing data. Tombo also provides tools for
 the analysis and visualization of raw nanopore signal.
lintian 2.79.0~bpo10+1 check for tombo_1.5.1-1_amd64.deb (click to toggle)
contents of tombo_1.5.1-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-15 09:13 ./
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/bin/
-rwxr-xr-x root/root       384 2020-06-15 09:13 ./usr/bin/tombo
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/lib/
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/lib/python3/
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/
-rw-r--r-- root/root      7908 2020-06-15 09:13 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2020-06-15 09:13 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/dependency_links.txt
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-rw-r--r-- root/root      3547 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/__init__.py
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-rw-r--r-- root/root     89722 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/resquiggle.py
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drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/lib/python3/dist-packages/tombo/tombo_models/
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-rw-r--r-- root/root     20338 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.180mV.model
-rw-r--r-- root/root     20273 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.200mV.model
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drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/share/
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/share/doc/tombo/
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-rw-r--r-- root/root      3064 2020-06-15 09:13 ./usr/share/doc/tombo/copyright
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/share/man/
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/share/man/man1/
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drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/share/python3/
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/share/python3/runtime.d/
-rwxr-xr-x root/root       125 2020-06-15 09:13 ./usr/share/python3/runtime.d/tombo.rtupdate
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/share/tombo/
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/share/tombo/scripts/
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control file for tombo-dbgsym_1.5.1-1_amd64.deb (click to toggle)
Package:tombo-dbgsym
Source:tombo
Version:1.5.1-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:552
Depends:tombo (=1.5.1-1)
Section:debug
Priority:optional
Description:
debug symbols for tombo
Build-Ids:98cb04e73d99919f8c394f5f7c0a6b5ab8280cef a1c9019c81b6b09e0f53de6ca9840feef3995bed
lintian 2.79.0~bpo10+1 check for tombo-dbgsym_1.5.1-1_amd64.deb (click to toggle)
contents of tombo-dbgsym_1.5.1-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-15 09:13 ./
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/lib/
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/lib/debug/.build-id/
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drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/lib/debug/.dwz/x86_64-linux-gnu/
-rw-r--r-- root/root     25872 2020-06-15 09:13 ./usr/lib/debug/.dwz/x86_64-linux-gnu/tombo.debug
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/share/
drwxr-xr-x root/root         0 2020-06-15 09:13 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-06-15 09:13 ./usr/share/doc/tombo-dbgsym -> tombo
control file for tombo-doc_1.5.1-1_all.deb (click to toggle)
Package:tombo-doc
Source:tombo
Version:1.5.1-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:23276
Depends:libjs-sphinxdoc (>=1.0), sphinx-rtd-theme-common (>=0.4.3+dfsg), libjs-mathjax
Section:doc
Priority:optional
Homepage:https://github.com/nanoporetech/tombo
Description:
identification of modified nucleotides from raw nanopore sequencing data (doc)
 Tombo is a suite of tools primarily for the identification of modified
 nucleotides from nanopore sequencing data. Tombo also provides tools for
 the analysis and visualization of raw nanopore signal.
 .
 This package contains the documentation for tombo.
lintian 2.79.0~bpo10+1 check for tombo-doc_1.5.1-1_all.deb (click to toggle)
W: tombo-doc: privacy-breach-generic usr/share/doc/tombo/html/index.html [<img alt="bioconda_badge" src="https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square" />] (https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)
W: tombo-doc: privacy-breach-generic usr/share/doc/tombo/html/index.html [<img alt="pypi_badge" src="https://badge.fury.io/py/ont-tombo.svg" />] (https://badge.fury.io/py/ont-tombo.svg)
contents of tombo-doc_1.5.1-1_all.deb (click to toggle)
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Timestamp: 24.06.2020 / 15:01:27 (UTC)