corner image corner image corner image corner image Debian NEW package overview for toil
toil_3.16.0-1_amd64.changes (click to toggle)
Format:1.8
Date:Thu, 14 Jun 2018 00:10:51 +0200
Source:toil
Binary:toil
Architecture:source all
Version:3.16.0-1
Distribution:experimental
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
toil       - cross-platform workflow engine
Closes:851365
Changes:
toil (3.16.0-1) experimental; urgency=medium

  * New upstream version.
    - No dependency on db2k any more -> python3 compatibility
  * debian/control
    - compliance with policy 4.1.4
    - adjusted paths to repository
  * Initial release to experimental for initial feedback from the
    community (Closes: #851365)
    - need to clarify if to depend on python2 or python3
    - need to clarify essential and recommended runtime dependencies
    - extra binaries installed
    - documentation should be built beyond man page,
      demanded virtualenv for doc-building unclear
    - missing some optional modules like python-htcondor
Files:
8f87d731f0164748afa40d370635c47e 2080 net optional toil_3.16.0-1.dsc
404bbcd103796d2a55bfc3ce3a5207fa 7294986 net optional toil_3.16.0.orig.tar.gz
5de7d1b08fcbfb810cfd5490786f7e94 4636 net optional toil_3.16.0-1.debian.tar.xz
fb2cc22e93af8873063246cb647d8781 350144 net optional toil_3.16.0-1_all.deb
7fe92fe01f2e9242d7c84369cccae2f7 8249 net optional toil_3.16.0-1_amd64.buildinfo
toil_3.16.0-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:toil
Binary:toil
Architecture:all
Version:3.16.0-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Steffen Moeller <moeller@debian.org>, Michael R. Crusoe <michael.crusoe@gmail.com>
Homepage:https://github.com/BD2KGenomics/toil
Standards-Version:4.1.4
Vcs-Browser:https://salsa.debian.org/med-team/toil
Vcs-Git:https://salsa.debian.org/med-team/toil.git
Build-Depends:debhelper (>=10), dh-python, python-all, python-setuptools, python-docker, python-galaxy-lib, cwltool, python-urllib3, python-chardet, python-sphinx
Package-List:toil deb net optional arch=all
Files:
404bbcd103796d2a55bfc3ce3a5207fa 7294986 toil_3.16.0.orig.tar.gz
5de7d1b08fcbfb810cfd5490786f7e94 4636 toil_3.16.0-1.debian.tar.xz
lintian check for toil_3.16.0-1.dsc (click to toggle)
W: toil source: build-depends-on-python-sphinx-only
W: toil source: ancient-python-version-field x-python-version 2.6
README.source for toil_3.16.0-1.dsc (click to toggle)
toil for Debian
---------------

The current version the package was derived from what was uploaded to the
pypi repository.  This should be changed towards the gihub repository,
except for a lack of tags that are not set for the latest versions
available on Pypi.

 -- Steffen Moeller <moeller@debian.org>  Fri, 13 Jan 2017 15:58:18 +0100

control file for toil_3.16.0-1_all.deb (click to toggle)
Package:toil
Version:3.16.0-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1670
Depends:python-dateutil, python-dill, python-docker, python-future, python-requests, python-six (>=1.10.0), python-subprocess32, python:any (<<2.8), python:any (>=2.7.5-5~), python-cgcloud-lib, python-schema-salad, cwltool
Recommends:python-boto, python-boto3, python-protobuf, python-futures, python-libcloud
Suggests:python-azure, python-azure-storage
Section:net
Priority:optional
Homepage:https://github.com/BD2KGenomics/toil
Description:
cross-platform workflow engine
 Toil is a scalable, efficient, cross-platform and easy-to-use workflow
 engine in pure Python.  It works with several well established load
 balancers like Slurm or the Sun Grid Engine.  Toil is compatible with
 the Common Workflow Language (CWL).
lintian check for toil_3.16.0-1_all.deb (click to toggle)
W: toil: manpage-has-errors-from-man usr/share/man/man1/toil.1.gz 3633: warning [p 34, 11.0i]: cannot adjust line
W: toil: binary-without-manpage usr/bin/_toil_mesos_executor
W: toil: binary-without-manpage usr/bin/_toil_worker
W: toil: binary-without-manpage usr/bin/cwltoil
W: toil: binary-without-manpage usr/bin/toil-cwl-runner
W: toil: binary-without-manpage usr/bin/toil-wdl-runner
contents of toil_3.16.0-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2018-06-13 22:10 ./
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/bin/
-rwxr-xr-x root/root       403 2018-06-13 22:10 ./usr/bin/_toil_mesos_executor
-rwxr-xr-x root/root       387 2018-06-13 22:10 ./usr/bin/_toil_worker
-rwxr-xr-x root/root       377 2018-06-13 22:10 ./usr/bin/cwltoil
-rwxr-xr-x root/root       371 2018-06-13 22:10 ./usr/bin/toil
-rwxr-xr-x root/root       393 2018-06-13 22:10 ./usr/bin/toil-cwl-runner
-rwxr-xr-x root/root       393 2018-06-13 22:10 ./usr/bin/toil-wdl-runner
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/lib/
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/lib/python2.7/
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/
-rw-r--r-- root/root     11669 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/__init__.py
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/batchSystems/
-rw-r--r-- root/root      2033 2018-06-13 20:55 ./usr/lib/python2.7/dist-packages/toil/batchSystems/__init__.py
-rw-r--r-- root/root     18973 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/batchSystems/abstractBatchSystem.py
-rw-r--r-- root/root     15307 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/batchSystems/abstractGridEngineBatchSystem.py
-rw-r--r-- root/root      6264 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/batchSystems/gridengine.py
-rw-r--r-- root/root     12339 2018-06-13 20:55 ./usr/lib/python2.7/dist-packages/toil/batchSystems/htcondor.py
-rw-r--r-- root/root      9783 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/batchSystems/lsf.py
-rw-r--r-- root/root      6028 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/batchSystems/lsfHelper.py
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/batchSystems/mesos/
-rw-r--r-- root/root      5736 2018-06-13 20:55 ./usr/lib/python2.7/dist-packages/toil/batchSystems/mesos/__init__.py
-rw-r--r-- root/root     28337 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/batchSystems/mesos/batchSystem.py
-rw-r--r-- root/root       830 2018-06-13 20:55 ./usr/lib/python2.7/dist-packages/toil/batchSystems/mesos/conftest.py
-rw-r--r-- root/root      8757 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/batchSystems/mesos/executor.py
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/batchSystems/mesos/test/
-rw-r--r-- root/root      3072 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/batchSystems/mesos/test/__init__.py
-rw-r--r-- root/root      6521 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/batchSystems/options.py
-rw-r--r-- root/root     16627 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/batchSystems/parasol.py
-rw-r--r-- root/root      4457 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/batchSystems/parasolTestSupport.py
-rw-r--r-- root/root      3033 2018-06-13 20:55 ./usr/lib/python2.7/dist-packages/toil/batchSystems/registry.py
-rw-r--r-- root/root     16443 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/batchSystems/singleMachine.py
-rw-r--r-- root/root     10187 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/batchSystems/slurm.py
-rw-r--r-- root/root     10652 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/batchSystems/torque.py
-rw-r--r-- root/root     62796 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/common.py
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/cwl/
-rw-r--r-- root/root         1 2018-06-13 20:55 ./usr/lib/python2.7/dist-packages/toil/cwl/__init__.py
-rw-r--r-- root/root       777 2018-06-13 20:55 ./usr/lib/python2.7/dist-packages/toil/cwl/conftest.py
-rw-r--r-- root/root     43105 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/cwl/cwltoil.py
-rw-r--r-- root/root     93945 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/fileStore.py
-rw-r--r-- root/root     80654 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/job.py
-rw-r--r-- root/root      9853 2018-06-13 20:55 ./usr/lib/python2.7/dist-packages/toil/jobGraph.py
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/jobStores/
-rw-r--r-- root/root       706 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/jobStores/__init__.py
-rw-r--r-- root/root     42432 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/jobStores/abstractJobStore.py
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/jobStores/aws/
-rw-r--r-- root/root         0 2018-06-13 20:55 ./usr/lib/python2.7/dist-packages/toil/jobStores/aws/__init__.py
-rw-r--r-- root/root     56763 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/jobStores/aws/jobStore.py
-rw-r--r-- root/root     15376 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/jobStores/aws/utils.py
-rw-r--r-- root/root     33322 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/jobStores/azureJobStore.py
-rw-r--r-- root/root       856 2018-06-13 20:55 ./usr/lib/python2.7/dist-packages/toil/jobStores/conftest.py
-rw-r--r-- root/root     22018 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/jobStores/fileJobStore.py
-rw-r--r-- root/root     17961 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/jobStores/googleJobStore.py
-rw-r--r-- root/root      8525 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/jobStores/utils.py
-rw-r--r-- root/root     49918 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/leader.py
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/lib/
-rw-r--r-- root/root       651 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/lib/__init__.py
-rw-r--r-- root/root     12296 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/lib/bioio.py
-rw-r--r-- root/root     31863 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/lib/context.py
-rw-r--r-- root/root     25352 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/lib/docker.py
-rw-r--r-- root/root     17226 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/lib/ec2.py
-rw-r--r-- root/root      7137 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/lib/ec2Credentials.py
-rw-r--r-- root/root     11730 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/lib/ec2nodes.py
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/lib/encryption/
-rw-r--r-- root/root       728 2018-06-13 20:55 ./usr/lib/python2.7/dist-packages/toil/lib/encryption/__init__.py
-rw-r--r-- root/root      1070 2018-06-13 20:55 ./usr/lib/python2.7/dist-packages/toil/lib/encryption/_dummy.py
-rw-r--r-- root/root      3471 2018-06-13 20:55 ./usr/lib/python2.7/dist-packages/toil/lib/encryption/_nacl.py
-rw-r--r-- root/root       159 2018-06-13 20:55 ./usr/lib/python2.7/dist-packages/toil/lib/encryption/conftest.py
-rw-r--r-- root/root      2104 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/lib/exceptions.py
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-rw-r--r-- root/root     28601 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/lib/generatedEC2Lists.py
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-rw-r--r-- root/root      2994 2018-06-13 20:55 ./usr/lib/python2.7/dist-packages/toil/lib/misc.py
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drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/provisioners/
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-rw-r--r-- root/root      2118 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/provisioners/ansibleDriver.py
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/provisioners/aws/
-rw-r--r-- root/root      9637 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/provisioners/aws/__init__.py
-rw-r--r-- root/root     27467 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/provisioners/aws/awsProvisioner.py
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/provisioners/azure/
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-rw-r--r-- root/root      2007 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/provisioners/azure/create-azure-cluster.yml
-rw-r--r-- root/root       992 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/provisioners/azure/create-azure-resourcegroup.yml
-rw-r--r-- root/root      2134 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/provisioners/azure/create-azure-vm.yml
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-rw-r--r-- root/root      1974 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/utils/toilRsyncCluster.py
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drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/lib/python2.7/dist-packages/toil/wdl/
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drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/share/
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-06-13 22:10 ./usr/share/doc/toil/
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Timestamp: 14.06.2018 / 13:01:15 (UTC)