Debian NEW package overview for tandem-genotypes
tandem-genotypes_1.8.3-1_amd64.changes (click to toggle)
Format:1.8
Date:Mon, 12 Jul 2021 16:38:16 +0530
Source:tandem-genotypes
Binary:tandem-genotypes
Architecture:source all
Version:1.8.3-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
tandem-genotypes - compare lengths of duplications in DNA sequences
Closes:990856
Changes:
tandem-genotypes (1.8.3-1) unstable; urgency=medium

  * Initial release (Closes: #990856)
Files:
06efbc4cc1a99c0cd2b89b99cabf5e7a 2464 science optional tandem-genotypes_1.8.3-1.dsc
9ff69994f4567760cf9518291e8b62eb 1696663 science optional tandem-genotypes_1.8.3.orig-debian-tests-data.tar.gz
9e5f68daa2816df34d9be697db2275be 32205 science optional tandem-genotypes_1.8.3.orig.tar.gz
f5f3e7ffe916fafad80ab4ede23b53c5 4660 science optional tandem-genotypes_1.8.3-1.debian.tar.xz
fb88e0b2c6635863efb48d973441152c 21428 science optional tandem-genotypes_1.8.3-1_all.deb
584af0dbbc31e14bbbe7e463b8134d2b 6330 science optional tandem-genotypes_1.8.3-1_amd64.buildinfo
tandem-genotypes_1.8.3-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:tandem-genotypes
Binary:tandem-genotypes
Architecture:all
Version:1.8.3-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Steffen Moeller <moeller@debian.org>, Nilesh Patra <nilesh@debian.org>
Homepage:https://github.com/mcfrith/tandem-genotypes
Standards-Version:4.5.1
Vcs-Browser:https://salsa.debian.org/med-team/tandem-genotypes
Vcs-Git:https://salsa.debian.org/med-team/tandem-genotypes.git
Testsuite:autopkgtest
Build-Depends:debhelper-compat (=13), dh-python, python3-setuptools, python3-all
Package-List:tandem-genotypes deb science optional arch=all
Files:
9ff69994f4567760cf9518291e8b62eb 1696663 tandem-genotypes_1.8.3.orig-debian-tests-data.tar.gz
9e5f68daa2816df34d9be697db2275be 32205 tandem-genotypes_1.8.3.orig.tar.gz
f5f3e7ffe916fafad80ab4ede23b53c5 4660 tandem-genotypes_1.8.3-1.debian.tar.xz
lintian 2.94.0~bpo10+1 check for tandem-genotypes_1.8.3-1.dsc (click to toggle)
README.source for tandem-genotypes_1.8.3-1.dsc (click to toggle)
Used help2man to generate man pages.
control file for tandem-genotypes_1.8.3-1_all.deb (click to toggle)
Package:tandem-genotypes
Version:1.8.3-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:87
Depends:python3:any
Section:science
Priority:optional
Homepage:https://github.com/mcfrith/tandem-genotypes
Description:
compare lengths of duplications in DNA sequences
 Only a fraction of the DNA in the human genome (and that of other species
 that are not optimised for the speed of their replication like viruses)
 are coding for genes. Other parts may be binding to transcription factors
 or direct the expression of genes in other ways - these other bits may
 not be fully understood, and parts may indeed be "junk", but this is
 only until user finds a clinical feature to be statistically associated
 with something statistically noteworthy in the DNA sequences.
 .
 Features that somehow seem informative when looking at the DNA are
 whatever does not look like random. This tool looks at a special case
 of repeats - short regions that are duplicated, i.e. they appear as a
 tandem. When these repeats are longer, then these would be referred as
 microsatellites.
 .
 When interested in structural variations, within a family/population or
 to compare cancer tissue with benign samples, you may also want to look
 at these repeats. This software determines the lengths (and changes to
 the lengths) across samples and knows how to present this graphically.
lintian 2.94.0~bpo10+1 check for tandem-genotypes_1.8.3-1_all.deb (click to toggle)
contents of tandem-genotypes_1.8.3-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2021-07-12 11:08 ./
drwxr-xr-x root/root         0 2021-07-12 11:08 ./usr/
drwxr-xr-x root/root         0 2021-07-12 11:08 ./usr/bin/
-rwxr-xr-x root/root     26920 2021-07-12 11:08 ./usr/bin/tandem-genotypes
-rwxr-xr-x root/root      7923 2021-07-12 11:08 ./usr/bin/tandem-genotypes-join
-rwxr-xr-x root/root      5585 2021-07-12 11:08 ./usr/bin/tandem-genotypes-merge
-rwxr-xr-x root/root      8446 2021-07-12 11:08 ./usr/bin/tandem-genotypes-plot
drwxr-xr-x root/root         0 2021-07-12 11:08 ./usr/lib/
drwxr-xr-x root/root         0 2021-07-12 11:08 ./usr/lib/python3/
drwxr-xr-x root/root         0 2021-07-12 11:08 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2021-07-12 11:08 ./usr/lib/python3/dist-packages/tandem_genotypes-1.8.3.egg-info/
-rw-r--r-- root/root     14807 2021-07-12 11:08 ./usr/lib/python3/dist-packages/tandem_genotypes-1.8.3.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2021-07-12 11:08 ./usr/lib/python3/dist-packages/tandem_genotypes-1.8.3.egg-info/dependency_links.txt
-rw-r--r-- root/root         1 2021-07-12 11:08 ./usr/lib/python3/dist-packages/tandem_genotypes-1.8.3.egg-info/top_level.txt
drwxr-xr-x root/root         0 2021-07-12 11:08 ./usr/share/
drwxr-xr-x root/root         0 2021-07-12 11:08 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-07-12 11:08 ./usr/share/doc/tandem-genotypes/
-rw-r--r-- root/root       163 2021-07-12 11:08 ./usr/share/doc/tandem-genotypes/changelog.Debian.gz
-rw-r--r-- root/root      1469 2021-07-12 10:48 ./usr/share/doc/tandem-genotypes/copyright
drwxr-xr-x root/root         0 2021-07-12 11:08 ./usr/share/man/
drwxr-xr-x root/root         0 2021-07-12 11:08 ./usr/share/man/man1/
-rw-r--r-- root/root       535 2021-07-12 11:08 ./usr/share/man/man1/tandem-genotypes-join.1.gz
-rw-r--r-- root/root       803 2021-07-12 11:08 ./usr/share/man/man1/tandem-genotypes-merge.1.gz
-rw-r--r-- root/root       620 2021-07-12 11:08 ./usr/share/man/man1/tandem-genotypes-plot.1.gz
-rw-r--r-- root/root       830 2021-07-12 11:08 ./usr/share/man/man1/tandem-genotypes.1.gz

Timestamp: 12.07.2021 / 12:00:56 (UTC)