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stringtie_2.1.4+ds-1_amd64.changes (click to toggle)
Format:1.8
Date:Tue, 01 Sep 2020 18:15:56 +0200
Source:stringtie
Binary:stringtie stringtie-dbgsym stringtie-examples
Architecture:source amd64 all
Version:2.1.4+ds-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
stringtie  - assemble short RNAseq reads to transcripts
stringtie-examples - Examples for assembling short RNAseq reads to transcripts
Changes:
stringtie (2.1.4+ds-1) unstable; urgency=medium

  * New upstream version
Files:
67cf38867780f4290085e3239feb4d2d 2147 science optional stringtie_2.1.4+ds-1.dsc
4c5287c6b5a27fed1d260e6a4bb6444e 244148 science optional stringtie_2.1.4+ds.orig.tar.xz
5f5dc988f3ad8678854c7963a56a2ce9 795140 science optional stringtie_2.1.4+ds-1.debian.tar.xz
7e7547cd9fce733165081a501b3d0fdf 1688400 debug optional stringtie-dbgsym_2.1.4+ds-1_amd64.deb
e2c7f46d0da42c1a40777297668670bd 1351400 science optional stringtie-examples_2.1.4+ds-1_all.deb
d746be8531b606e26c6875cfb22d2cea 7356 science optional stringtie_2.1.4+ds-1_amd64.buildinfo
f94a4a161212a7586ada06690f6b077c 405844 science optional stringtie_2.1.4+ds-1_amd64.deb
control file for stringtie-dbgsym_2.1.4+ds-1_amd64.deb (click to toggle)
Package:stringtie-dbgsym
Source:stringtie
Version:2.1.4+ds-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1729
Depends:stringtie (=2.1.4+ds-1)
Section:debug
Priority:optional
Description:
debug symbols for stringtie
Build-Ids:00c0f8c35f9802afa92fb28931d225c11fe7f0ad
lintian 2.90.0~bpo10+1 check for stringtie-dbgsym_2.1.4+ds-1_amd64.deb (click to toggle)
contents of stringtie-dbgsym_2.1.4+ds-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-09-01 16:15 ./
drwxr-xr-x root/root         0 2020-09-01 16:15 ./usr/
drwxr-xr-x root/root         0 2020-09-01 16:15 ./usr/lib/
drwxr-xr-x root/root         0 2020-09-01 16:15 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-09-01 16:15 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-09-01 16:15 ./usr/lib/debug/.build-id/00/
-rw-r--r-- root/root   1759688 2020-09-01 16:15 ./usr/lib/debug/.build-id/00/c0f8c35f9802afa92fb28931d225c11fe7f0ad.debug
drwxr-xr-x root/root         0 2020-09-01 16:15 ./usr/share/
drwxr-xr-x root/root         0 2020-09-01 16:15 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-09-01 16:15 ./usr/share/doc/stringtie-dbgsym -> stringtie
control file for stringtie-examples_2.1.4+ds-1_all.deb (click to toggle)
Package:stringtie-examples
Source:stringtie
Version:2.1.4+ds-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1414
Enhances:stringtie
Section:science
Priority:optional
Homepage:https://ccb.jhu.edu/software/stringtie/
Description:
Examples for assembling short RNAseq reads to transcripts
 The abundance of transcripts in a human tissue sample
 can be determined by RNA sequencing. The exact sequence
 sampled may be random, depending on the technology used.
 And it may be short, i.e. shorter than the transcript.
 At some point, many shorter reads need to be assembled
 to the model the complete transcripts.
 .
 StringTie knows how to assemble of RNA-Seq into potential
 transcripts without the need of a reference genome and
 provides a quantification also of the splice variants.
 .
 This package contains a test data set as well as sample scripts
 running some test suite provided by Debian also as autopkgtest.
lintian 2.90.0~bpo10+1 check for stringtie-examples_2.1.4+ds-1_all.deb (click to toggle)
contents of stringtie-examples_2.1.4+ds-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2020-09-01 16:15 ./
drwxr-xr-x root/root         0 2020-09-01 16:15 ./usr/
drwxr-xr-x root/root         0 2020-09-01 16:15 ./usr/share/
drwxr-xr-x root/root         0 2020-09-01 16:15 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-09-01 16:15 ./usr/share/doc/stringtie-examples/
-rw-r--r-- root/root      1451 2020-09-01 16:15 ./usr/share/doc/stringtie-examples/README.md
-rw-r--r-- root/root      1126 2020-09-01 16:15 ./usr/share/doc/stringtie-examples/changelog.Debian.gz
-rw-r--r-- root/root     11149 2020-09-01 16:15 ./usr/share/doc/stringtie-examples/copyright
-rw-r--r-- root/root    986562 2020-09-01 16:15 ./usr/share/doc/stringtie-examples/human-chr19_P.gff.gz
-rw-r--r-- root/root      1104 2020-09-01 16:15 ./usr/share/doc/stringtie-examples/long_reads.out_expected.gtf.gz
-rw-r--r-- root/root    102717 2020-09-01 16:15 ./usr/share/doc/stringtie-examples/long_reads.sam.gz
-rw-r--r-- root/root      1342 2020-09-01 16:15 ./usr/share/doc/stringtie-examples/long_reads_guided.out_expected.gtf.gz
-rw-r--r-- root/root      1527 2020-09-01 16:15 ./usr/share/doc/stringtie-examples/run-unit-test
-rw-r--r-- root/root      1164 2020-09-01 16:15 ./usr/share/doc/stringtie-examples/short_reads.out_expected.gtf.gz
-rw-r--r-- root/root    159945 2020-09-01 16:15 ./usr/share/doc/stringtie-examples/short_reads.sam.gz
-rw-r--r-- root/root      1146 2020-09-01 16:15 ./usr/share/doc/stringtie-examples/short_reads_and_superreads.out_expected.gtf.gz
-rw-r--r-- root/root    164628 2020-09-01 16:15 ./usr/share/doc/stringtie-examples/short_reads_and_superreads.sam.gz

Timestamp: 01.09.2020 / 19:01:05 (UTC)