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stringtie_2.1.2+ds-2_amd64.changes (click to toggle)
Format:1.8
Date:Sun, 23 Aug 2020 12:37:28 +0530
Source:stringtie
Binary:stringtie stringtie-dbgsym stringtie-examples
Architecture:source amd64 all
Version:2.1.2+ds-2
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Nilesh Patra <npatra974@gmail.com>
Description:
stringtie  - assemble short RNAseq reads to transcripts
stringtie-examples - Examples for stringtie: assemble short RNAseq reads to transcript
Changes:
stringtie (2.1.2+ds-2) unstable; urgency=medium

  * Team Upload.
  * Add binary: stringtie-examples
  * Add autopkgtests
  * Install relevant examples
  * s/http/https/ debian/control
  * compat version: 13
Files:
fb8ca094442b3fe1e3d577077e34bb93 2143 science optional stringtie_2.1.2+ds-2.dsc
fa04886f1fd04ac7cdf6875a2d389665 795344 science optional stringtie_2.1.2+ds-2.debian.tar.xz
a67101c7949c3b522e31e1ab3c622114 1682792 debug optional stringtie-dbgsym_2.1.2+ds-2_amd64.deb
7f2a265739713a1c969b9a9197571397 1351368 science optional stringtie-examples_2.1.2+ds-2_all.deb
a616ac3a05469fffc87e38120302f882 6916 science optional stringtie_2.1.2+ds-2_amd64.buildinfo
dfb0f36cbaf444bc7e5a55f4e20aa1c0 403380 science optional stringtie_2.1.2+ds-2_amd64.deb
control file for stringtie-dbgsym_2.1.2+ds-2_amd64.deb (click to toggle)
Package:stringtie-dbgsym
Source:stringtie
Version:2.1.2+ds-2
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1724
Depends:stringtie (=2.1.2+ds-2)
Section:debug
Priority:optional
Description:
debug symbols for stringtie
Build-Ids:0de659659de86c5d1b0cbd98b9832e1e1df7f0bd
lintian 2.90.0~bpo10+1 check for stringtie-dbgsym_2.1.2+ds-2_amd64.deb (click to toggle)
contents of stringtie-dbgsym_2.1.2+ds-2_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-08-23 07:07 ./
drwxr-xr-x root/root         0 2020-08-23 07:07 ./usr/
drwxr-xr-x root/root         0 2020-08-23 07:07 ./usr/lib/
drwxr-xr-x root/root         0 2020-08-23 07:07 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-08-23 07:07 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-08-23 07:07 ./usr/lib/debug/.build-id/0d/
-rw-r--r-- root/root   1754120 2020-08-23 07:07 ./usr/lib/debug/.build-id/0d/e659659de86c5d1b0cbd98b9832e1e1df7f0bd.debug
drwxr-xr-x root/root         0 2020-08-23 07:07 ./usr/share/
drwxr-xr-x root/root         0 2020-08-23 07:07 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-08-23 07:07 ./usr/share/doc/stringtie-dbgsym -> stringtie
control file for stringtie-examples_2.1.2+ds-2_all.deb (click to toggle)
Package:stringtie-examples
Source:stringtie
Version:2.1.2+ds-2
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1414
Enhances:stringtie
Section:science
Priority:optional
Homepage:https://ccb.jhu.edu/software/stringtie/
Description:
Examples for stringtie: assemble short RNAseq reads to transcripts
 The abundance of transcripts in a human tissue sample
 can be determined by RNA sequencing. The exact sequence
 sampled may be random, depending on the technology used.
 And it may be short, i.e. shorter than the transcript.
 At some point, many shorter reads need to be assembled
 to the model the complete transcripts.
 .
 StringTie knows how to assemble of RNA-Seq into potential
 transcripts without the need of a reference genome and
 provides a quantification also of the splice variants.
 .
 This package contains a test data set as well as sample scripts
 running some test suite provided by Debian also as autopkgtest.
lintian 2.90.0~bpo10+1 check for stringtie-examples_2.1.2+ds-2_all.deb (click to toggle)
contents of stringtie-examples_2.1.2+ds-2_all.deb (click to toggle)
drwxr-xr-x root/root         0 2020-08-23 07:07 ./
drwxr-xr-x root/root         0 2020-08-23 07:07 ./usr/
drwxr-xr-x root/root         0 2020-08-23 07:07 ./usr/share/
drwxr-xr-x root/root         0 2020-08-23 07:07 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-08-23 07:07 ./usr/share/doc/stringtie-examples/
-rw-r--r-- root/root      1451 2020-08-23 07:07 ./usr/share/doc/stringtie-examples/README.md
-rw-r--r-- root/root      1078 2020-08-23 07:07 ./usr/share/doc/stringtie-examples/changelog.Debian.gz
-rw-r--r-- root/root     11149 2020-08-23 07:07 ./usr/share/doc/stringtie-examples/copyright
-rw-r--r-- root/root    986562 2020-08-23 07:07 ./usr/share/doc/stringtie-examples/human-chr19_P.gff.gz
-rw-r--r-- root/root      1104 2020-08-23 07:07 ./usr/share/doc/stringtie-examples/long_reads.out_expected.gtf.gz
-rw-r--r-- root/root    102717 2020-08-23 07:07 ./usr/share/doc/stringtie-examples/long_reads.sam.gz
-rw-r--r-- root/root      1342 2020-08-23 07:07 ./usr/share/doc/stringtie-examples/long_reads_guided.out_expected.gtf.gz
-rw-r--r-- root/root      1527 2020-08-23 07:07 ./usr/share/doc/stringtie-examples/run-unit-test
-rw-r--r-- root/root      1164 2020-08-23 07:07 ./usr/share/doc/stringtie-examples/short_reads.out_expected.gtf.gz
-rw-r--r-- root/root    159945 2020-08-23 07:07 ./usr/share/doc/stringtie-examples/short_reads.sam.gz
-rw-r--r-- root/root      1146 2020-08-23 07:07 ./usr/share/doc/stringtie-examples/short_reads_and_superreads.out_expected.gtf.gz
-rw-r--r-- root/root    164628 2020-08-23 07:07 ./usr/share/doc/stringtie-examples/short_reads_and_superreads.sam.gz

Timestamp: 23.08.2020 / 19:01:06 (UTC)