Debian NEW package overview for sourmash
| sourmash_4.8.11-1_amd64.changes (click to toggle) | |
|---|---|
| Format: | 1.8 |
| Date: | Sat, 02 Nov 2024 10:41:23 +0100 |
| Source: | sourmash |
| Binary: | sourmash sourmash-dbgsym |
| Architecture: | source amd64 |
| Version: | 4.8.11-1 |
| Distribution: | unstable |
| Urgency: | low |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Changed-By: | Michael R. Crusoe <crusoe@debian.org> |
| Description: | sourmash - tools for comparing DNA sequences with MinHash sketches |
| Closes: | 919681 |
| Changes: | sourmash (4.8.11-1) unstable; urgency=low * Initial release. (Closes: #919681) |
| Files: | 596fee8ed59f2d12708d6d67eebc103c 3227 python optional sourmash_4.8.11-1.dsc 3def82fee81b5c65396d44df52f84902 21772586 python optional sourmash_4.8.11.orig.tar.gz 318e063c61e1c0eaa6c27dd63fa2b4c1 9748 python optional sourmash_4.8.11-1.debian.tar.xz 1218e99a5fc3c5f1987fda360069af10 5349076 debug optional sourmash-dbgsym_4.8.11-1_amd64.deb 8bf6318fecf7642007c5e285b4750c44 26177 python optional sourmash_4.8.11-1_amd64.buildinfo 802653954f3bc2b89dff41cefa41b46e 559988 python optional sourmash_4.8.11-1_amd64.deb |
| sourmash_4.8.11-1.dsc (click to toggle) | |
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| Format: | 3.0 (quilt) |
| Source: | sourmash |
| Binary: | sourmash |
| Architecture: | any |
| Version: | 4.8.11-1 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Uploaders: | Michael R. Crusoe <crusoe@debian.org> |
| Homepage: | https://github.com/dib-lab/sourmash |
| Standards-Version: | 4.6.2 |
| Vcs-Browser: | https://salsa.debian.org/med-team/sourmash |
| Vcs-Git: | https://salsa.debian.org/med-team/sourmash.git |
| Testsuite: | autopkgtest-pkg-pybuild |
| Build-Depends: | debhelper-compat (=13), architecture-is-64-bit, architecture-is-little-endian, cargo, dh-cargo, dh-sequence-python3, librust-az-dev, librust-byteorder-dev, librust-counter-dev, librust-camino-dev, librust-cfg-if-dev, librust-csv-dev, librust-enum-dispatch-dev, librust-fixedbitset-dev, librust-getset-dev, librust-histogram-dev, librust-itertools-dev, librust-log-dev, librust-md5-dev, librust-memmap2-dev, librust-murmurhash3-dev, librust-needletail-dev, librust-niffler-dev, librust-nohash-hasher-dev, librust-num-iter-dev, librust-once-cell-dev, librust-ouroboros-dev, librust-piz-dev, librust-primal-check-dev, librust-rayon-dev, librust-rkyv-dev, librust-roaring-dev, librust-roots-dev, librust-serde+serde-derive-dev, librust-serde-json-dev, librust-statrs-dev, librust-streaming-stats-dev, librust-twox-hash-dev, librust-typed-builder-dev, librust-vec-collections-dev, librust-chrono-dev, pybuild-plugin-pyproject, python3-maturin, python3-bitstring, python3-cachetools, python3-cffi, python3-all-dev, python3-ijson, python3-matplotlib, python3-numpy, python3-pytest<!nocheck>, python3-pytest-xdist<!nocheck>, python3-scipy, python3-sphinx, python3-screed, python3-setuptools, python3-setuptools-scm, python3-yaml, python3-hypothesis<!nocheck>, python3-deprecation<!nocheck> |
| Package-List: | sourmash deb python optional arch=any |
| Files: | 3def82fee81b5c65396d44df52f84902 21772586 sourmash_4.8.11.orig.tar.gz 318e063c61e1c0eaa6c27dd63fa2b4c1 9748 sourmash_4.8.11-1.debian.tar.xz |
| control file for sourmash_4.8.11-1_amd64.deb (click to toggle) | |
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| Package: | sourmash |
| Version: | 4.8.11-1 |
| Architecture: | amd64 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Installed-Size: | 2031 |
| Depends: | python3 (>=3~), python3-bitstring, python3-cachetools, python3-cffi-backend-api-min (<=9729), python3-cffi-backend-api-max (>=9729), python3-deprecation, python3-matplotlib, python3-numpy, python3-scipy, python3-screed, python3:any, libc6 (>=2.34), libgcc-s1 (>=4.2) |
| Built-Using: | rustc (= 1.82.0+dfsg1-2) |
| Static-Built-Using: | rustc (= 1.82.0+dfsg1-2) |
| Section: | python |
| Priority: | optional |
| Homepage: | https://github.com/dib-lab/sourmash |
| Description: | tools for comparing DNA sequences with MinHash sketches Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences. . MinHash sketches provide a lightweight way to store “signatures” of large DNA or RNA sequence collections, and then compare or search them using a Jaccard index. MinHash sketches can be used to identify samples, find similar samples, identify data sets with shared sequences, and build phylogenetic trees (Ondov et al. 2015). . sourmash provides a command line script, a Python library, and a CPython module for MinHash sketches |
| contents of sourmash_4.8.11-1_amd64.deb (click to toggle) | |
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drwxr-xr-x root/root 0 2024-11-02 09:41 ./ drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/ drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/bin/ -rwxr-xr-x root/root 216 2024-11-02 09:41 ./usr/bin/sourmash drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/lib/ drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/lib/python3/ drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/ -rw-r--r-- root/root 4251 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/__init__.py -rw-r--r-- root/root 572 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/__main__.py drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/_lowlevel/ -rw-r--r-- root/root 139 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/_lowlevel/__init__.py -rw-r--r-- root/root 1075656 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/_lowlevel/_lowlevel.so -rw-r--r-- root/root 16510 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/_lowlevel/ffi.py drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/ -rw-r--r-- root/root 13 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/.gitignore -rw-r--r-- root/root 5626 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/__init__.py -rw-r--r-- root/root 1184 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/categorize.py -rw-r--r-- root/root 4119 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/compare.py -rw-r--r-- root/root 4877 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/compute.py -rw-r--r-- root/root 6581 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/gather.py -rw-r--r-- root/root 667 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/import_csv.py -rw-r--r-- root/root 2827 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/index.py -rw-r--r-- root/root 926 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/info.py drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/lca/ -rw-r--r-- root/root 1186 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/lca/__init__.py -rw-r--r-- root/root 1414 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/lca/classify.py -rw-r--r-- root/root 1442 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/lca/compare_csv.py -rw-r--r-- root/root 2602 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/lca/index.py -rw-r--r-- root/root 722 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/lca/rankinfo.py -rw-r--r-- root/root 1470 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/lca/summarize.py -rw-r--r-- root/root 299 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/migrate.py -rw-r--r-- root/root 3705 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/multigather.py -rw-r--r-- root/root 2427 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/plot.py -rw-r--r-- root/root 2516 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/prefetch.py -rw-r--r-- root/root 453 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/sbt_combine.py drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/scripts/ -rw-r--r-- root/root 1706 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/scripts/__init__.py -rw-r--r-- root/root 4483 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/search.py drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/sig/ -rw-r--r-- root/root 1613 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/sig/__init__.py -rw-r--r-- root/root 1674 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/sig/cat.py -rw-r--r-- root/root 3141 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/sig/check.py -rw-r--r-- root/root 2573 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/sig/collect.py -rw-r--r-- root/root 1595 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/sig/describe.py -rw-r--r-- root/root 1984 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/sig/downsample.py -rw-r--r-- root/root 1025 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/sig/export.py -rw-r--r-- root/root 2541 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/sig/extract.py -rw-r--r-- root/root 1173 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/sig/fileinfo.py -rw-r--r-- root/root 1911 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/sig/filter.py -rw-r--r-- root/root 1687 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/sig/flatten.py -rw-r--r-- root/root 3126 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/cli/sig/grep.py -rw-r--r-- root/root 925 2024-11-02 09:41 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./usr/lib/python3/dist-packages/sourmash/sourmash_args.py -rw-r--r-- root/root 2404 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/sqlite_utils.py drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/tax/ -rw-r--r-- root/root 27 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/tax/__init__.py -rw-r--r-- root/root 23509 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/tax/__main__.py -rw-r--r-- root/root 106448 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/tax/tax_utils.py -rw-r--r-- root/root 2069 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash/utils.py drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash-4.8.11.dist-info/ -rw-r--r-- root/root 7 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash-4.8.11.dist-info/INSTALLER -rw-r--r-- root/root 9519 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash-4.8.11.dist-info/METADATA -rw-r--r-- root/root 96 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash-4.8.11.dist-info/WHEEL -rw-r--r-- root/root 50 2024-11-02 09:41 ./usr/lib/python3/dist-packages/sourmash-4.8.11.dist-info/entry_points.txt drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/share/ drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/share/doc/sourmash/ -rw-r--r-- root/root 159 2024-11-02 09:41 ./usr/share/doc/sourmash/changelog.Debian.gz -rw-r--r-- root/root 2018 2024-11-02 08:51 ./usr/share/doc/sourmash/copyright | |
| copyright of sourmash_4.8.11-1_amd64.deb (click to toggle) | |
|---|---|
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: sourmash
Upstream-Contact: C. Titus Brown <titus@idyll.org>
Source: https://github.com/dib-lab/sourmash
Files: *
Copyright: 2016, The Regents of the University of California.
2016-2023, C. Titus Brown, Luiz Irber, and N. Tessa Pierce-Ward
License: BSD-3-clause
Files: debian/*
Copyright: 2019-2024 © Michael R. Crusoe <crusoe@debian.org>
License: BSD-3-clause
License: BSD-3-clause
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
.
* Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
.
* Redistributions in binary form must reproduce the above
copyright notice, this list of conditions and the following
disclaimer in the documentation and/or other materials provided
with the distribution.
.
* Neither the name of The Regents of the University of
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| |
| control file for sourmash-dbgsym_4.8.11-1_amd64.deb (click to toggle) | |
|---|---|
| Package: | sourmash-dbgsym |
| Source: | sourmash |
| Version: | 4.8.11-1 |
| Auto-Built-Package: | debug-symbols |
| Architecture: | amd64 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Installed-Size: | 5454 |
| Depends: | sourmash (=4.8.11-1) |
| Section: | debug |
| Priority: | optional |
| Description: | debug symbols for sourmash |
| Build-Ids: | 1cbcecaa1caf26be6f8930b9c27a8dc069443029 |
| contents of sourmash-dbgsym_4.8.11-1_amd64.deb (click to toggle) | |
|---|---|
drwxr-xr-x root/root 0 2024-11-02 09:41 ./ drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/ drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/lib/ drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/lib/debug/.build-id/1c/ -rw-r--r-- root/root 5574184 2024-11-02 09:41 ./usr/lib/debug/.build-id/1c/bcecaa1caf26be6f8930b9c27a8dc069443029.debug drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/share/ drwxr-xr-x root/root 0 2024-11-02 09:41 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-11-02 09:41 ./usr/share/doc/sourmash-dbgsym -> sourmash | |
| copyright of sourmash-dbgsym_4.8.11-1_amd64.deb (click to toggle) | |
|---|---|
WARNING: No copyright found, please check package manually. | |
Timestamp: 02.11.2024 / 12:02:51 (UTC)