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sibelia_3.0.7+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Sun, 26 Jan 2020 21:05:58 +0100
Source:sibelia
Binary:sibelia sibelia-dbgsym sibelia-examples
Architecture:source amd64 all
Version:3.0.7+dfsg-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
sibelia    - comparative genomics tool
sibelia-examples - comparative genomics tool (example data)
Closes:922377
Changes:
sibelia (3.0.7+dfsg-1) unstable; urgency=medium

  * Initial release (Closes: #922377)
Files:
820f4f30322ba9c0a2c3cc5f898d4404 2133 science optional sibelia_3.0.7+dfsg-1.dsc
38311be6d2eee4d5e4d4a8ccf2d9c85e 4833128 science optional sibelia_3.0.7+dfsg.orig.tar.xz
4350c9cee156b92b84c18d88563e796f 9204 science optional sibelia_3.0.7+dfsg-1.debian.tar.xz
f7d204357de27f43ce6a311b0eaffdcf 3742764 debug optional sibelia-dbgsym_3.0.7+dfsg-1_amd64.deb
62e147fbe0126df4a463498be449a870 7704360 science optional sibelia-examples_3.0.7+dfsg-1_all.deb
8655ac2cad4d1fc0280267f994b14c28 7408 science optional sibelia_3.0.7+dfsg-1_amd64.buildinfo
7fd120febde7e3fd13dd89cabf16b274 316628 science optional sibelia_3.0.7+dfsg-1_amd64.deb
sibelia_3.0.7+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:sibelia
Binary:sibelia, sibelia-examples
Architecture:any all
Version:3.0.7+dfsg-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Andreas Tille <tille@debian.org>
Homepage:http://bioinf.spbau.ru/sibelia
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/med-team/sibelia
Vcs-Git:https://salsa.debian.org/med-team/sibelia.git
Testsuite:autopkgtest
Build-Depends:debhelper-compat (=12), cmake, libdivsufsort-dev, libboost-dev, libseqan2-dev, libtclap-dev, libhts-dev
Package-List:sibelia deb science optional arch=any sibelia-examples deb science optional arch=all
Files:
38311be6d2eee4d5e4d4a8ccf2d9c85e 4833128 sibelia_3.0.7+dfsg.orig.tar.xz
4350c9cee156b92b84c18d88563e796f 9204 sibelia_3.0.7+dfsg-1.debian.tar.xz
lintian 2.45.0~bpo9+1 check for sibelia_3.0.7+dfsg-1.dsc (click to toggle)
W: sibelia source: newer-standards-version 4.5.0 (current is 4.4.1)
N: false positive
O: sibelia source: source-is-missing examples/Sibelia/Staphylococcus_aureus/d3_blocks_diagram.html line length is 702 characters (>512)
N: false positive
O: sibelia source: source-is-missing examples/Sibelia/Staphylococcus_aureus/d3_blocks_diagram.html line length is 702 characters (>512)
README.source for sibelia_3.0.7+dfsg-1.dsc (click to toggle)
No README.source in this package
control file for sibelia_3.0.7+dfsg-1_amd64.deb (click to toggle)
Package:sibelia
Version:3.0.7+dfsg-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1175
Depends:libc6 (>=2.14), libdivsufsort3 (>=2.0.1), libgcc1 (>=1:3.0), libstdc++6 (>=9), python3, lagan
Suggests:sibelia-examples
Section:science
Priority:optional
Homepage:http://bioinf.spbau.ru/sibelia
Description:
comparative genomics tool
 Sibelia (Synteny Block ExpLoration tool) is a comparative genomics tool:
 It assists biologists in analysing the genomic variations that correlate
 with pathogens, or the genomic changes that help microorganisms adapt in
 different environments. Sibelia will also be helpful for the
 evolutionary and genome rearrangement studies for multiple strains of
 microorganisms.
 .
 Sibelia is useful in finding:
 .
  1) shared regions,
  2) regions that present in one group of genomes but not in others,
  3) rearrangements that transform one genome to other genomes.
lintian 2.45.0~bpo9+1 check for sibelia_3.0.7+dfsg-1_amd64.deb (click to toggle)
N: see https://lists.debian.org/debian-med/2018/06/msg00043.html
O: sibelia: script-with-language-extension usr/bin/C-Sibelia.py
contents of sibelia_3.0.7+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-01-26 20:05 ./
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/bin/
-rwxr-xr-x root/root     23858 2020-01-26 20:05 ./usr/bin/C-Sibelia.py
-rwxr-xr-x root/root   1128656 2020-01-26 20:05 ./usr/bin/Sibelia
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/Sibelia/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/Sibelia/utils/
-rw-r--r-- root/root      3540 2018-02-06 17:54 ./usr/share/Sibelia/utils/hidemappedcontigs.py
-rw-r--r-- root/root      1533 2018-02-06 17:54 ./usr/share/Sibelia/utils/sortsequences.py
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/doc/sibelia/
-rw-r--r-- root/root      1216 2018-02-06 17:54 ./usr/share/doc/sibelia/ANNOTATION.md
-rw-r--r-- root/root      1957 2018-02-06 17:54 ./usr/share/doc/sibelia/C-SIBELIA.md.gz
-rw-r--r-- root/root      1322 2018-02-06 17:54 ./usr/share/doc/sibelia/NEWS.md.gz
-rw-r--r-- root/root       594 2020-01-26 20:05 ./usr/share/doc/sibelia/README.Debian
-rw-r--r-- root/root      3082 2018-02-06 17:54 ./usr/share/doc/sibelia/README.md
-rw-r--r-- root/root       278 2020-01-26 20:05 ./usr/share/doc/sibelia/README.test
-rw-r--r-- root/root      6404 2018-02-06 17:54 ./usr/share/doc/sibelia/SIBELIA.md.gz
-rw-r--r-- root/root       142 2018-02-06 17:54 ./usr/share/doc/sibelia/USAGE.md
-rw-r--r-- root/root       159 2020-01-26 20:05 ./usr/share/doc/sibelia/changelog.Debian.gz
-rw-r--r-- root/root      1265 2020-01-26 20:05 ./usr/share/doc/sibelia/copyright
-rw-r--r-- root/root       453 2020-01-26 20:05 ./usr/share/doc/sibelia/run-unit-test
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/lintian/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       116 2020-01-26 20:05 ./usr/share/lintian/overrides/sibelia
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/man/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/man/man1/
-rw-r--r-- root/root       943 2020-01-26 20:05 ./usr/share/man/man1/C-Sibelia.py.1.gz
-rw-r--r-- root/root      1296 2020-01-26 20:05 ./usr/share/man/man1/Sibelia.1.gz
lrwxrwxrwx root/root         0 2020-01-26 20:05 ./usr/share/Sibelia/doc -> ../doc/sibelia
control file for sibelia-dbgsym_3.0.7+dfsg-1_amd64.deb (click to toggle)
Package:sibelia-dbgsym
Source:sibelia
Version:3.0.7+dfsg-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:3891
Depends:sibelia (=3.0.7+dfsg-1)
Section:debug
Priority:optional
Description:
debug symbols for sibelia
Build-Ids:e2d3e6563dd3bede54a2fc4d29e7c3c4875ec6c8
lintian 2.45.0~bpo9+1 check for sibelia-dbgsym_3.0.7+dfsg-1_amd64.deb (click to toggle)
contents of sibelia-dbgsym_3.0.7+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-01-26 20:05 ./
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/lib/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/lib/debug/.build-id/e2/
-rw-r--r-- root/root   3973200 2020-01-26 20:05 ./usr/lib/debug/.build-id/e2/d3e6563dd3bede54a2fc4d29e7c3c4875ec6c8.debug
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-01-26 20:05 ./usr/share/doc/sibelia-dbgsym -> sibelia
control file for sibelia-examples_3.0.7+dfsg-1_all.deb (click to toggle)
Package:sibelia-examples
Source:sibelia
Version:3.0.7+dfsg-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:9184
Section:science
Priority:optional
Homepage:http://bioinf.spbau.ru/sibelia
Description:
comparative genomics tool (example data)
 Sibelia (Synteny Block ExpLoration tool) is a comparative genomics tool:
 It assists biologists in analysing the genomic variations that correlate
 with pathogens, or the genomic changes that help microorganisms adapt in
 different environments. Sibelia will also be helpful for the
 evolutionary and genome rearrangement studies for multiple strains of
 microorganisms.
 .
 Sibelia is useful in finding:
 .
  1) shared regions,
  2) regions that present in one group of genomes but not in others,
  3) rearrangements that transform one genome to other genomes.
 .
 This package contains example data for sibelia.
lintian 2.45.0~bpo9+1 check for sibelia-examples_3.0.7+dfsg-1_all.deb (click to toggle)
contents of sibelia-examples_3.0.7+dfsg-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2020-01-26 20:05 ./
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/doc/sibelia/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/doc/sibelia/examples/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/doc/sibelia/examples/C-Sibelia/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/doc/sibelia/examples/C-Sibelia/Staphylococcus_aureus/
-rw-r--r-- root/root    825243 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/C-Sibelia/Staphylococcus_aureus/NCTC8325.fasta.gz
-rw-r--r-- root/root       119 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/C-Sibelia/Staphylococcus_aureus/README.txt
-rw-r--r-- root/root    782553 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/C-Sibelia/Staphylococcus_aureus/RN4220.fasta.gz
-rw-r--r-- root/root     39707 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/C-Sibelia/Staphylococcus_aureus/variant.vcf.gz
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/doc/sibelia/examples/Sibelia/
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/
-rw-r--r-- root/root    954471 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/Helicobacter_pylori.fasta.gz
-rw-r--r-- root/root       124 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/README.txt
-rw-r--r-- root/root      3630 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/blocks_coords.txt
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/circos/
-rw-r--r-- root/root      2561 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/circos/circos.conf
-rw-r--r-- root/root      1603 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/circos/circos.highlight.txt
-rw-r--r-- root/root      1722 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/circos/circos.highlight1.txt
-rw-r--r-- root/root      1382 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/circos/circos.highlight2.txt.gz
-rw-r--r-- root/root      4907 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/circos/circos.highlight3.txt.gz
-rw-r--r-- root/root     15196 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/circos/circos.highlight4.txt.gz
-rw-r--r-- root/root       282 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/circos/circos.image.conf
-rw-r--r-- root/root    675896 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/circos/circos.png
-rw-r--r-- root/root      1902 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/circos/circos.segdup.txt
-rw-r--r-- root/root       120 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/circos/circos.sequences.txt
-rw-r--r-- root/root    613435 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/circos/circos.svg
-rw-r--r-- root/root       376 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/coverage_report.txt
-rw-r--r-- root/root    258806 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/d3_blocks_diagram.html
-rw-r--r-- root/root       211 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Helicobacter_pylori/genomes_permutations.txt
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/doc/sibelia/examples/Sibelia/Staphylococcus_aureus/
-rw-r--r-- root/root       116 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Staphylococcus_aureus/README.txt
-rw-r--r-- root/root   3377715 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Staphylococcus_aureus/Staphylococcus.fasta.gz
-rw-r--r-- root/root      1817 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Staphylococcus_aureus/blocks_coords.txt.gz
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/doc/sibelia/examples/Sibelia/Staphylococcus_aureus/circos/
-rw-r--r-- root/root      1857 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Staphylococcus_aureus/circos/circos.conf
-rw-r--r-- root/root      1202 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Staphylococcus_aureus/circos/circos.highlight.txt.gz
-rw-r--r-- root/root       282 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Staphylococcus_aureus/circos/circos.image.conf
-rw-r--r-- root/root    951413 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Staphylococcus_aureus/circos/circos.png
-rw-r--r-- root/root      4138 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Staphylococcus_aureus/circos/circos.segdup.txt.gz
-rw-r--r-- root/root       238 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Staphylococcus_aureus/circos/circos.sequences.txt
-rw-r--r-- root/root    553568 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Staphylococcus_aureus/circos/circos.svg
-rw-r--r-- root/root       647 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Staphylococcus_aureus/coverage_report.txt
-rw-r--r-- root/root    287996 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Staphylococcus_aureus/d3_blocks_diagram.html
-rw-r--r-- root/root       594 2018-02-06 17:54 ./usr/share/doc/sibelia/examples/Sibelia/Staphylococcus_aureus/genomes_permutations.txt
drwxr-xr-x root/root         0 2020-01-26 20:05 ./usr/share/doc/sibelia-examples/
-rw-r--r-- root/root       159 2020-01-26 20:05 ./usr/share/doc/sibelia-examples/changelog.Debian.gz
-rw-r--r-- root/root      1265 2020-01-26 20:05 ./usr/share/doc/sibelia-examples/copyright

Timestamp: 26.01.2020 / 21:01:36 (UTC)