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seqan3_3.0.0+ds2-1_amd64.changes (click to toggle)
Format:1.8
Date:Mon, 12 Aug 2019 14:05:10 +0200
Source:seqan3
Binary:libseqan3-dev seqan3-doc
Architecture:source all
Version:3.0.0+ds2-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Michael R. Crusoe <michael.crusoe@gmail.com>
Description:
libseqan3-dev - C++ library for the analysis of biological sequences v3 (developm
seqan3-doc - C++ library for the analysis of biological sequences v3 (document
Closes:934629
Changes:
seqan3 (3.0.0+ds2-1) unstable; urgency=medium

  * Initial upload. (Closes: #934629)
Files:
c12089cc9c047e1d5f1357bafca1ac72 2280 science optional seqan3_3.0.0+ds2-1.dsc
717bf0b48f0cb6794909d1aee03d73ae 2003684 science optional seqan3_3.0.0+ds2.orig.tar.xz
2eea02a5015d883275ef4611c80e0913 14620 science optional seqan3_3.0.0+ds2-1.debian.tar.xz
e9b33adbf742c7318541d8ca098b1dbc 778224 libdevel optional libseqan3-dev_3.0.0+ds2-1_all.deb
df1b91df30a4152bb91769ff24638457 12487440 doc optional seqan3-doc_3.0.0+ds2-1_all.deb
b5c811738a9a80d249199968d2f39087 9990 science optional seqan3_3.0.0+ds2-1_amd64.buildinfo
seqan3_3.0.0+ds2-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:seqan3
Binary:libseqan3-dev, seqan3-doc
Architecture:all
Version:3.0.0+ds2-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Michael R. Crusoe <michael.crusoe@gmail.com>
Homepage:http://www.seqan.de/
Standards-Version:4.4.0
Vcs-Browser:https://salsa.debian.org/med-team/seqan3
Vcs-Git:https://salsa.debian.org/med-team/seqan3.git
Testsuite:autopkgtest
Testsuite-Triggers:cmake, libboost-dev, libgtest-dev, quilt
Build-Depends:debhelper-compat (=12), cmake, ninja-build, zlib1g-dev, libbz2-dev, libboost-dev, libgtest-dev, liblemon-dev, libcereal-dev, help2man, doxygen, graphviz, cppreference-doc-en-html, texlive-latex-base, ghostscript
Package-List:libseqan3-dev deb libdevel optional arch=all seqan3-doc deb doc optional arch=all
Files:
717bf0b48f0cb6794909d1aee03d73ae 2003684 seqan3_3.0.0+ds2.orig.tar.xz
2eea02a5015d883275ef4611c80e0913 14620 seqan3_3.0.0+ds2-1.debian.tar.xz
lintian 2.21.0~bpo9+1 check for seqan3_3.0.0+ds2-1.dsc (click to toggle)
README.source for seqan3_3.0.0+ds2-1.dsc (click to toggle)
No README.source in this package
control file for libseqan3-dev_3.0.0+ds2-1_all.deb (click to toggle)
Package:libseqan3-dev
Source:seqan3
Version:3.0.0+ds2-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:6806
Depends:zlib1g-dev, libbz2-dev, liblemon-dev, libcereal-dev
Section:libdevel
Priority:optional
Multi-Arch:foreign
Homepage:http://www.seqan.de/
Description:
C++ library for the analysis of biological sequences v3 (development)
 SeqAn is a C++ template library of efficient algorithms and data
 structures for the analysis of sequences with the focus on
 biological data. This library applies a unique generic design that
 guarantees high performance, generality, extensibility, and
 integration with other libraries. SeqAn is easy to use and
 simplifies the development of new software tools with a minimal loss
 of performance.
 .
 This package contains the developer files.
lintian 2.21.0~bpo9+1 check for libseqan3-dev_3.0.0+ds2-1_all.deb (click to toggle)
contents of libseqan3-dev_3.0.0+ds2-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2019-08-12 12:05 ./
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alignment/
drwxr-xr-x root/root         0 2019-06-06 18:18 ./usr/include/seqan3/alignment/aligned_sequence/
-rw-r--r-- root/root     23678 2019-06-06 18:18 ./usr/include/seqan3/alignment/aligned_sequence/aligned_sequence_concept.hpp
-rw-r--r-- root/root       976 2019-06-06 18:18 ./usr/include/seqan3/alignment/aligned_sequence/all.hpp
-rw-r--r-- root/root     15326 2019-06-06 18:18 ./usr/include/seqan3/alignment/all.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alignment/band/
-rw-r--r-- root/root       909 2019-06-06 18:18 ./usr/include/seqan3/alignment/band/all.hpp
-rw-r--r-- root/root      2833 2019-06-06 18:18 ./usr/include/seqan3/alignment/band/static_band.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alignment/configuration/
-rw-r--r-- root/root     22055 2019-06-06 18:18 ./usr/include/seqan3/alignment/configuration/align_config_aligned_ends.hpp
-rw-r--r-- root/root      2376 2019-06-06 18:18 ./usr/include/seqan3/alignment/configuration/align_config_band.hpp
-rw-r--r-- root/root      2968 2019-06-06 18:18 ./usr/include/seqan3/alignment/configuration/align_config_edit.hpp
-rw-r--r-- root/root      2500 2019-06-06 18:18 ./usr/include/seqan3/alignment/configuration/align_config_gap.hpp
-rw-r--r-- root/root      1954 2019-06-06 18:18 ./usr/include/seqan3/alignment/configuration/align_config_max_error.hpp
-rw-r--r-- root/root      3736 2019-06-06 18:18 ./usr/include/seqan3/alignment/configuration/align_config_mode.hpp
-rw-r--r-- root/root      4540 2019-06-06 18:18 ./usr/include/seqan3/alignment/configuration/align_config_result.hpp
-rw-r--r-- root/root      2405 2019-06-06 18:18 ./usr/include/seqan3/alignment/configuration/align_config_scoring.hpp
-rw-r--r-- root/root      1595 2019-06-06 18:18 ./usr/include/seqan3/alignment/configuration/all.hpp
-rw-r--r-- root/root      2835 2019-06-06 18:18 ./usr/include/seqan3/alignment/configuration/detail.hpp
-rw-r--r-- root/root      1474 2019-06-06 18:18 ./usr/include/seqan3/alignment/exception.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alignment/matrix/
-rw-r--r-- root/root     17512 2019-06-06 18:18 ./usr/include/seqan3/alignment/matrix/alignment_coordinate.hpp
-rw-r--r-- root/root      3091 2019-06-06 18:18 ./usr/include/seqan3/alignment/matrix/alignment_optimum.hpp
-rw-r--r-- root/root      6180 2019-06-06 18:18 ./usr/include/seqan3/alignment/matrix/alignment_trace_algorithms.hpp
-rw-r--r-- root/root      1187 2019-06-06 18:18 ./usr/include/seqan3/alignment/matrix/all.hpp
-rw-r--r-- root/root     16858 2019-06-06 18:18 ./usr/include/seqan3/alignment/matrix/debug_matrix.hpp
-rw-r--r-- root/root      8286 2019-06-06 18:18 ./usr/include/seqan3/alignment/matrix/edit_distance_score_matrix_full.hpp
-rw-r--r-- root/root      7540 2019-06-06 18:18 ./usr/include/seqan3/alignment/matrix/edit_distance_trace_matrix_full.hpp
-rw-r--r-- root/root      3787 2019-06-06 18:18 ./usr/include/seqan3/alignment/matrix/matrix_concept.hpp
-rw-r--r-- root/root      3061 2019-06-06 18:18 ./usr/include/seqan3/alignment/matrix/row_wise_matrix.hpp
-rw-r--r-- root/root      2707 2019-06-06 18:18 ./usr/include/seqan3/alignment/matrix/trace_directions.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alignment/pairwise/
-rw-r--r-- root/root     10580 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/align_pairwise.hpp
-rw-r--r-- root/root      5490 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/align_result_selector.hpp
-rw-r--r-- root/root     28973 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/alignment_algorithm.hpp
-rw-r--r-- root/root     30127 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/alignment_configurator.hpp
-rw-r--r-- root/root      9192 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/alignment_range.hpp
-rw-r--r-- root/root      8662 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/alignment_result.hpp
-rw-r--r-- root/root      1422 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/all.hpp
-rw-r--r-- root/root      4479 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/edit_distance_algorithm.hpp
-rw-r--r-- root/root      7250 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/edit_distance_fwd.hpp
-rw-r--r-- root/root     44482 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/edit_distance_unbanded.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alignment/pairwise/execution/
-rw-r--r-- root/root     11383 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/execution/alignment_executor_two_way.hpp
-rw-r--r-- root/root      1045 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/execution/all.hpp
-rw-r--r-- root/root      6157 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/execution/execution_handler_parallel.hpp
-rw-r--r-- root/root      3116 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/execution/execution_handler_sequential.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alignment/pairwise/policy/
-rw-r--r-- root/root      9053 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/policy/affine_gap_banded_init_policy.hpp
-rw-r--r-- root/root      9364 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/policy/affine_gap_banded_policy.hpp
-rw-r--r-- root/root      7220 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/policy/affine_gap_init_policy.hpp
-rw-r--r-- root/root      6630 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/policy/affine_gap_policy.hpp
-rw-r--r-- root/root     10165 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/policy/all.hpp
-rw-r--r-- root/root     13001 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/policy/banded_score_dp_matrix_policy.hpp
-rw-r--r-- root/root     14170 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/policy/banded_score_trace_dp_matrix_policy.hpp
-rw-r--r-- root/root      9810 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/policy/find_optimum_policy.hpp
-rw-r--r-- root/root      5338 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/policy/unbanded_score_dp_matrix_policy.hpp
-rw-r--r-- root/root     11928 2019-06-06 18:18 ./usr/include/seqan3/alignment/pairwise/policy/unbanded_score_trace_dp_matrix_policy.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alignment/scoring/
-rw-r--r-- root/root      1182 2019-06-06 18:18 ./usr/include/seqan3/alignment/scoring/all.hpp
-rw-r--r-- root/root     21271 2019-06-06 18:18 ./usr/include/seqan3/alignment/scoring/aminoacid_scoring_scheme.hpp
-rw-r--r-- root/root     10701 2019-06-06 18:18 ./usr/include/seqan3/alignment/scoring/gap_scheme.hpp
-rw-r--r-- root/root      3693 2019-06-06 18:18 ./usr/include/seqan3/alignment/scoring/nucleotide_scoring_scheme.hpp
-rw-r--r-- root/root     10322 2019-06-06 18:18 ./usr/include/seqan3/alignment/scoring/scoring_scheme_base.hpp
-rw-r--r-- root/root      2849 2019-06-06 18:18 ./usr/include/seqan3/alignment/scoring/scoring_scheme_concept.hpp
drwxr-xr-x root/root         0 2019-06-06 18:18 ./usr/include/seqan3/alphabet/
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alphabet/adaptation/
-rw-r--r-- root/root       979 2019-06-06 18:18 ./usr/include/seqan3/alphabet/adaptation/all.hpp
-rw-r--r-- root/root      4818 2019-06-06 18:18 ./usr/include/seqan3/alphabet/adaptation/char.hpp
-rw-r--r-- root/root      4757 2019-06-06 18:18 ./usr/include/seqan3/alphabet/adaptation/uint.hpp
-rw-r--r-- root/root     11701 2019-06-06 18:18 ./usr/include/seqan3/alphabet/all.hpp
-rw-r--r-- root/root     10742 2019-06-06 18:18 ./usr/include/seqan3/alphabet/alphabet_base.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alphabet/aminoacid/
-rw-r--r-- root/root      8833 2019-06-06 18:18 ./usr/include/seqan3/alphabet/aminoacid/aa10li.hpp
-rw-r--r-- root/root      8891 2019-06-06 18:18 ./usr/include/seqan3/alphabet/aminoacid/aa10murphy.hpp
-rw-r--r-- root/root      7363 2019-06-06 18:18 ./usr/include/seqan3/alphabet/aminoacid/aa20.hpp
-rw-r--r-- root/root      5669 2019-06-06 18:18 ./usr/include/seqan3/alphabet/aminoacid/aa27.hpp
-rw-r--r-- root/root      7843 2019-06-06 18:18 ./usr/include/seqan3/alphabet/aminoacid/all.hpp
-rw-r--r-- root/root      4341 2019-06-06 18:18 ./usr/include/seqan3/alphabet/aminoacid/aminoacid_base.hpp
-rw-r--r-- root/root      2592 2019-06-06 18:18 ./usr/include/seqan3/alphabet/aminoacid/concept.hpp
-rw-r--r-- root/root      6413 2019-06-06 18:18 ./usr/include/seqan3/alphabet/aminoacid/translation.hpp
-rw-r--r-- root/root     43871 2019-06-06 18:18 ./usr/include/seqan3/alphabet/aminoacid/translation_details.hpp
-rw-r--r-- root/root      1592 2019-06-06 18:18 ./usr/include/seqan3/alphabet/aminoacid/translation_genetic_code.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alphabet/cigar/
-rw-r--r-- root/root      2883 2019-06-06 18:18 ./usr/include/seqan3/alphabet/cigar/all.hpp
-rw-r--r-- root/root      5092 2019-06-06 18:18 ./usr/include/seqan3/alphabet/cigar/cigar.hpp
-rw-r--r-- root/root      4046 2019-06-06 18:18 ./usr/include/seqan3/alphabet/cigar/cigar_op.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alphabet/composite/
-rw-r--r-- root/root      1915 2019-06-06 18:18 ./usr/include/seqan3/alphabet/composite/all.hpp
-rw-r--r-- root/root     30888 2019-06-06 18:18 ./usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp
-rw-r--r-- root/root     27952 2019-06-06 18:18 ./usr/include/seqan3/alphabet/composite/alphabet_variant.hpp
-rw-r--r-- root/root      6000 2019-06-06 18:18 ./usr/include/seqan3/alphabet/composite/detail.hpp
-rw-r--r-- root/root      3884 2019-06-06 18:18 ./usr/include/seqan3/alphabet/composite/semialphabet_any.hpp
-rw-r--r-- root/root     40236 2019-06-06 18:18 ./usr/include/seqan3/alphabet/concept.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alphabet/detail/
-rw-r--r-- root/root     11183 2019-06-06 18:18 ./usr/include/seqan3/alphabet/detail/alphabet_proxy.hpp
-rw-r--r-- root/root      1798 2019-06-06 18:18 ./usr/include/seqan3/alphabet/detail/convert.hpp
-rw-r--r-- root/root      2531 2019-06-06 18:18 ./usr/include/seqan3/alphabet/detail/hash.hpp
-rw-r--r-- root/root      1927 2019-06-06 18:18 ./usr/include/seqan3/alphabet/exception.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alphabet/gap/
-rw-r--r-- root/root      1478 2019-06-06 18:18 ./usr/include/seqan3/alphabet/gap/all.hpp
-rw-r--r-- root/root      2052 2019-06-06 18:18 ./usr/include/seqan3/alphabet/gap/gap.hpp
-rw-r--r-- root/root      2559 2019-06-06 18:18 ./usr/include/seqan3/alphabet/gap/gapped.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alphabet/mask/
-rw-r--r-- root/root      1912 2019-06-06 18:18 ./usr/include/seqan3/alphabet/mask/all.hpp
-rw-r--r-- root/root      2483 2019-06-06 18:18 ./usr/include/seqan3/alphabet/mask/mask.hpp
-rw-r--r-- root/root      5847 2019-06-06 18:18 ./usr/include/seqan3/alphabet/mask/masked.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alphabet/nucleotide/
-rw-r--r-- root/root     12021 2019-06-06 18:18 ./usr/include/seqan3/alphabet/nucleotide/all.hpp
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-rw-r--r-- root/root      6281 2019-06-06 18:18 ./usr/include/seqan3/alphabet/nucleotide/dna15.hpp
-rw-r--r-- root/root      6121 2019-06-06 18:18 ./usr/include/seqan3/alphabet/nucleotide/dna4.hpp
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-rw-r--r-- root/root      5707 2019-06-06 18:18 ./usr/include/seqan3/alphabet/nucleotide/nucleotide_base.hpp
-rw-r--r-- root/root      5637 2019-06-06 18:18 ./usr/include/seqan3/alphabet/nucleotide/rna15.hpp
-rw-r--r-- root/root      4902 2019-06-06 18:18 ./usr/include/seqan3/alphabet/nucleotide/rna4.hpp
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-rw-r--r-- root/root      6724 2019-06-06 18:18 ./usr/include/seqan3/alphabet/nucleotide/sam_dna16.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alphabet/quality/
-rw-r--r-- root/root      1899 2019-06-06 18:18 ./usr/include/seqan3/alphabet/quality/aliases.hpp
-rw-r--r-- root/root      5330 2019-06-06 18:18 ./usr/include/seqan3/alphabet/quality/all.hpp
-rw-r--r-- root/root     10275 2019-06-06 18:18 ./usr/include/seqan3/alphabet/quality/concept.hpp
-rw-r--r-- root/root      4036 2019-06-06 18:18 ./usr/include/seqan3/alphabet/quality/phred42.hpp
-rw-r--r-- root/root      3871 2019-06-06 18:18 ./usr/include/seqan3/alphabet/quality/phred63.hpp
-rw-r--r-- root/root      4010 2019-06-06 18:18 ./usr/include/seqan3/alphabet/quality/phred68legacy.hpp
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-rw-r--r-- root/root      6132 2019-06-06 18:18 ./usr/include/seqan3/alphabet/quality/quality_base.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/alphabet/structure/
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-rw-r--r-- root/root      8715 2019-06-06 18:18 ./usr/include/seqan3/alphabet/structure/structured_rna.hpp
-rw-r--r-- root/root      8855 2019-06-06 18:18 ./usr/include/seqan3/alphabet/structure/wuss.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/argument_parser/
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-rw-r--r-- root/root      4888 2019-06-06 18:18 ./usr/include/seqan3/argument_parser/auxiliary.hpp
drwxr-xr-x root/root         0 2019-06-06 18:18 ./usr/include/seqan3/argument_parser/detail/
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-rw-r--r-- root/root     35442 2019-06-06 18:18 ./usr/include/seqan3/argument_parser/validators.hpp
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/contrib/
drwxr-xr-x root/root         0 2019-08-12 12:05 ./usr/include/seqan3/contrib/parallel/
-rw-r--r-- root/root     17408 2019-06-06 18:18 ./usr/include/seqan3/contrib/parallel/buffer_queue.hpp
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drwxr-xr-x root/root         0 2019-06-06 18:18 ./usr/include/seqan3/contrib/stream/
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control file for seqan3-doc_3.0.0+ds2-1_all.deb (click to toggle)
Package:seqan3-doc
Source:seqan3
Version:3.0.0+ds2-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:166693
Section:doc
Priority:optional
Homepage:http://www.seqan.de/
Description:
C++ library for the analysis of biological sequences v3 (documentation)
 SeqAn is a C++ template library of efficient algorithms and data
 structures for the analysis of sequences with the focus on
 biological data. This library applies a unique generic design that
 guarantees high performance, generality, extensibility, and
 integration with other libraries. SeqAn is easy to use and
 simplifies the development of new software tools with a minimal loss
 of performance.
 .
 This package contains the documentation and examples
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Timestamp: 25.09.2019 / 20:26:23 (UTC)