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relion_2.1-1_amd64.changes (click to toggle)
Format:1.8
Date:Mon, 04 Feb 2019 17:58:47 +0000
Source:relion
Binary:relion relion-gui relion-cuda relion-gui-cuda
Architecture:source amd64
Version:2.1-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Roland Fehrenbacher <rfehren@debian.org>
Description:
relion     - toolkit for 3D reconstructions in cryo-electron microscopy
relion-cuda - parallel toolkit for 3D reconstructions in cryo-electron microsco
relion-gui - parallel toolkit for 3D reconstructions in cryo-electron microsco
relion-gui-cuda - parallel toolkit for 3D reconstructions in cryo-electron microsco
Changes:
relion (2.1-1) unstable; urgency=medium

  * New upstream version 2.1
  * Rename available binary packages, since MPI support is now default.
    The MPI enabled binaries carry a suffix _mpi, serial versions are still
    available.
  * Dropped librelion* packages. Shared libraries are not meant to be used
    outside of the package and are now part of the relion* packages.
  * Add versions with CUDA/GPU support (these are in the Debian contrib
    archive area). They are named relion-cuda and relion-gui-cuda.
  * Moved to dep14 layout to work directly with the upstream git repo (see
    README.source in the source archive).
Files:
baa608ec697d5318b6730837f0ca5a85 2235 science optional relion_2.1-1.dsc
82779032e7da3d624a63eaafe43263a8 798872 science optional relion_2.1.orig.tar.xz
15a0498dea2b2926ad50817cd37572f5 5552 science optional relion_2.1-1.debian.tar.xz
8bd5f34445df31a62afc7f402d82bb82 33010168 contrib/debug optional relion-cuda-dbgsym_2.1-1_amd64.deb
46055867e7ce6627b27865b8a4160b82 2274548 contrib/science optional relion-cuda_2.1-1_amd64.deb
665bc19061fc9bc46e181ca71805c0b2 30868088 debug optional relion-dbgsym_2.1-1_amd64.deb
5c5259d415cbd11db4151aa6ecbaa151 3312176 debug optional relion-gui-cuda-dbgsym_2.1-1_amd64.deb
8285535eb4d74f1273df528c89624b9b 203544 science optional relion-gui-cuda_2.1-1_amd64.deb
c91339a88c07560c74eea96756c58ca5 3312384 debug optional relion-gui-dbgsym_2.1-1_amd64.deb
3f952e05c4178ff3f0348707d82ada30 203172 science optional relion-gui_2.1-1_amd64.deb
30068f76db8ebac992899599b23b99ed 11727 science optional relion_2.1-1_amd64.buildinfo
76c9667fd5db3755248579ab1f3fb75a 1539380 science optional relion_2.1-1_amd64.deb
control file for relion-dbgsym_2.1-1_amd64.deb (click to toggle)
Package:relion-dbgsym
Source:relion
Version:2.1-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:32175
Depends:relion (=2.1-1)
Section:debug
Priority:optional
Description:
debug symbols for relion
Build-Ids:033cbb0372c01cfb063cbf4c50886cc331492924 037974396dda483898f8759bafaa26441fcfe95c 04db40bcc9c346eb54f7ab509f12b4ef9c1607ec 14ae4bc7556d905d20ed998b1245735b4ec05322 15475e53643a921a493de93bcd34d430786eb12a 27d90731d6d8361d769b1e48aa7201bf787355fb 30c151aed5b5f374cb640911997e81221ba3bd51 3d4f1e68e17f2a8a5bafd750a4fd3724114b7d4d 3e45d426b83803863c68f5ae2f94ead2769011a3 41fabba37c4c069cd3b9b773469d64f5b35418f0 43b7613705211bac66bca3c7cadea20a928cf18a 46d0ed263d71059eb11203ea82cbe8aa1e396c7a 4ea318a85923e8f15e27c57c7b0575085e0690aa 50cfee637baf5f6ea9aebd08fd85942dc126f5d7 53f5a46ca440558a431ae550a6a4aabe598acfca 602e48b9f9d5cd2bb741ef6690a2e4da8eee6896 7636a0a154ead9cfee65901de1e1facdee56ae7f 779f56f537613b274e86d921098622dcb6852b3f 878c7e31a354f8c92853798b8cad0a5fae451fd9 893a82e2d8696745717b00001ac156621502c719 8b7194ac4744fa8c19c807ab36f4696339ab1d4f 8f6f69bf367d6fa23e895c290a93a39ac9b8ca71 9d2c2b905a3f00430fa8c63097f4f5c5226a32e9 acc436441f9d0ac72d514167b268a011759fa0cf b0ae61fafb83b666bf6bbb98e785e57c43b3b33e b772bed3497603331f3b4ef2d4b217dcc4bd0859 bba0ce34e571bd1bd143c961ab6609896ebc3b3a d7885afa80a779564f0ad3d3dd3b892ebf07b79b d84ab57625f3738d1861700925a66fcf31610372 e5cd1bb965af87619f94f18bceb86a5d9bce3cea eba8597800472591ab46f3f70ecc2b0c02cf452a f279b6a160dbfa0ff4a4333b7a1f7bb4bd3c05de f2d4f92f764b20d49a3bf5ec67d6f6bfe199ad54
lintian 2.5.123~bpo9+1 check for relion-dbgsym_2.1-1_amd64.deb (click to toggle)
contents of relion-dbgsym_2.1-1_amd64.deb (click to toggle)
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drwxr-xr-x root/root         0 2019-02-04 17:58 ./usr/share/doc/
lrwxrwxrwx root/root         0 2019-02-04 17:58 ./usr/share/doc/relion-dbgsym -> relion
control file for relion-cuda_2.1-1_amd64.deb (click to toggle)
Package:relion-cuda
Source:relion
Version:2.1-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:9088
Depends:openmpi-gcc | openmpi-bin, libc6 (>=2.27), libcufft9.2, libfftw3-double3 (>=3.3.5), libgcc1 (>=1:3.0), libopenmpi3, libstdc++6 (>=5.2)
Conflicts:relion
Breaks:relion-bin, relion-bin+gui, relion-bin+mpi, relion-bin+mpi+gui
Replaces:relion-bin, relion-bin+gui, relion-bin+mpi, relion-bin+mpi+gui
Section:contrib/science
Priority:optional
Homepage:https://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page
Description:
parallel toolkit for 3D reconstructions in cryo-electron microscopy
 RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone
 computer program for Maximum A Posteriori refinement of (multiple) 3D
 reconstructions or 2D class averages in cryo-electron microscopy.
 .
 RELION provides a GUI, several command-line tools in parallel (MPI) and serial
 versions, optionally with CUDA/GPU support.
 .
 relion-cuda provides the serial and parallel (MPI) command-line tools with
 CUDA/GPU support.
lintian 2.5.123~bpo9+1 check for relion-cuda_2.1-1_amd64.deb (click to toggle)
O: relion-cuda: package-name-doesnt-match-sonames librelion-gpu-util librelion-lib
O: relion-cuda: binary-without-manpage usr/bin/relion_autopick
O: relion-cuda: binary-without-manpage usr/bin/relion_autopick_mpi
O: relion-cuda: binary-without-manpage usr/bin/relion_ctf_toolbox
O: relion-cuda: binary-without-manpage usr/bin/relion_find_tiltpairs
O: relion-cuda: binary-without-manpage usr/bin/relion_helix_toolbox
O: relion-cuda: binary-without-manpage usr/bin/relion_image_handler
O: relion-cuda: binary-without-manpage usr/bin/relion_localsym
O: relion-cuda: binary-without-manpage usr/bin/relion_localsym_mpi
O: relion-cuda: binary-without-manpage usr/bin/relion_mask_create
O: relion-cuda: binary-without-manpage usr/bin/relion_particle_polish
O: relion-cuda: binary-without-manpage usr/bin/relion_particle_polish_mpi
O: relion-cuda: binary-without-manpage usr/bin/relion_particle_reposition
O: relion-cuda: binary-without-manpage usr/bin/relion_particle_sort
O: relion-cuda: binary-without-manpage usr/bin/relion_particle_sort_mpi
O: relion-cuda: binary-without-manpage usr/bin/relion_particle_symmetry_expand
O: relion-cuda: binary-without-manpage usr/bin/relion_postprocess
O: relion-cuda: binary-without-manpage usr/bin/relion_postprocess_mpi
O: relion-cuda: binary-without-manpage usr/bin/relion_prepare_subtomo
O: relion-cuda: binary-without-manpage usr/bin/relion_preprocess
O: relion-cuda: binary-without-manpage usr/bin/relion_preprocess_mpi
O: relion-cuda: binary-without-manpage usr/bin/relion_project
O: relion-cuda: binary-without-manpage usr/bin/relion_reconstruct
O: relion-cuda: binary-without-manpage usr/bin/relion_refine
O: relion-cuda: binary-without-manpage usr/bin/relion_refine_mpi
O: relion-cuda: binary-without-manpage usr/bin/relion_run_ctffind
O: relion-cuda: binary-without-manpage usr/bin/relion_run_ctffind_mpi
O: relion-cuda: binary-without-manpage usr/bin/relion_run_motioncorr
O: relion-cuda: binary-without-manpage usr/bin/relion_run_motioncorr_mpi
O: relion-cuda: binary-without-manpage usr/bin/relion_stack_create
O: relion-cuda: binary-without-manpage usr/bin/relion_star_combine
O: relion-cuda: binary-without-manpage usr/bin/relion_star_compare
O: relion-cuda: binary-without-manpage usr/bin/relion_star_datablock_ctfdat
O: relion-cuda: binary-without-manpage usr/bin/relion_star_datablock_singlefiles
O: relion-cuda: binary-without-manpage usr/bin/relion_star_datablock_stack
O: relion-cuda: binary-without-manpage usr/bin/relion_star_loopheader
O: relion-cuda: binary-without-manpage usr/bin/relion_star_plottable
O: relion-cuda: binary-without-manpage usr/bin/relion_star_printtable
O: relion-cuda: binary-without-manpage usr/bin/relion_tiltpair_plot
O: relion-cuda: shlib-without-versioned-soname usr/lib/x86_64-linux-gnu/librelion_gpu_util.so librelion_gpu_util.so
O: relion-cuda: shlib-without-versioned-soname usr/lib/x86_64-linux-gnu/librelion_lib.so librelion_lib.so
contents of relion-cuda_2.1-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2019-02-04 17:58 ./
drwxr-xr-x root/root         0 2019-02-04 17:58 ./usr/
drwxr-xr-x root/root         0 2019-02-04 17:58 ./usr/bin/
-rwxr-xr-x root/root     92328 2019-02-04 17:58 ./usr/bin/relion_autopick
-rwxr-xr-x root/root     92328 2019-02-04 17:58 ./usr/bin/relion_autopick_mpi
-rwxr-xr-x root/root    100528 2019-02-04 17:58 ./usr/bin/relion_ctf_toolbox
-rwxr-xr-x root/root     71856 2019-02-04 17:58 ./usr/bin/relion_find_tiltpairs
-rwxr-xr-x root/root    166064 2019-02-04 17:58 ./usr/bin/relion_helix_toolbox
-rwxr-xr-x root/root    149680 2019-02-04 17:58 ./usr/bin/relion_image_handler
-rwxr-xr-x root/root     18600 2019-02-04 17:58 ./usr/bin/relion_localsym
-rwxr-xr-x root/root     88232 2019-02-04 17:58 ./usr/bin/relion_localsym_mpi
-rwxr-xr-x root/root     92328 2019-02-04 17:58 ./usr/bin/relion_mask_create
-rwxr-xr-x root/root     92328 2019-02-04 17:58 ./usr/bin/relion_particle_polish
-rwxr-xr-x root/root     92328 2019-02-04 17:58 ./usr/bin/relion_particle_polish_mpi
-rwxr-xr-x root/root    129200 2019-02-04 17:58 ./usr/bin/relion_particle_reposition
-rwxr-xr-x root/root     18600 2019-02-04 17:58 ./usr/bin/relion_particle_sort
-rwxr-xr-x root/root     88232 2019-02-04 17:58 ./usr/bin/relion_particle_sort_mpi
-rwxr-xr-x root/root     51376 2019-02-04 17:58 ./usr/bin/relion_particle_symmetry_expand
-rwxr-xr-x root/root     96424 2019-02-04 17:58 ./usr/bin/relion_postprocess
-rwxr-xr-x root/root     96424 2019-02-04 17:58 ./usr/bin/relion_postprocess_mpi
-rwxr-xr-x root/root    166056 2019-02-04 17:58 ./usr/bin/relion_prepare_subtomo
-rwxr-xr-x root/root     18600 2019-02-04 17:58 ./usr/bin/relion_preprocess
-rwxr-xr-x root/root     88232 2019-02-04 17:58 ./usr/bin/relion_preprocess_mpi
-rwxr-xr-x root/root    125104 2019-02-04 17:58 ./usr/bin/relion_project
-rwxr-xr-x root/root    137392 2019-02-04 17:58 ./usr/bin/relion_reconstruct
-rwxr-xr-x root/root     59560 2019-02-04 17:58 ./usr/bin/relion_refine
-rwxr-xr-x root/root    129192 2019-02-04 17:58 ./usr/bin/relion_refine_mpi
-rwxr-xr-x root/root     18600 2019-02-04 17:58 ./usr/bin/relion_run_ctffind
-rwxr-xr-x root/root     84136 2019-02-04 17:58 ./usr/bin/relion_run_ctffind_mpi
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control file for relion-gui_2.1-1_amd64.deb (click to toggle)
Package:relion-gui
Source:relion
Version:2.1-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:719
Depends:openmpi-gcc | openmpi-bin, relion, libc6 (>=2.14), libfftw3-double3 (>=3.3.5), libfltk-forms1.3, libfltk-images1.3, libfltk1.3 (>=1.3.4), libgcc1 (>=1:3.0), libopenmpi3, libstdc++6 (>=5.2), libx11-6, libxext6
Conflicts:relion-cuda-gui
Breaks:relion-bin, relion-bin+gui, relion-bin+mpi, relion-bin+mpi+gui
Replaces:relion-bin, relion-bin+gui, relion-bin+mpi, relion-bin+mpi+gui
Section:science
Priority:optional
Homepage:https://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page
Description:
parallel toolkit for 3D reconstructions in cryo-electron microscopy
 RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone
 computer program for Maximum A Posteriori refinement of (multiple) 3D
 reconstructions or 2D class averages in cryo-electron microscopy.
 .
 RELION provides a GUI, several command-line tools in parallel (MPI) and serial
 versions, optionally with CUDA/GPU support.
 .
 relion-gui provides the graphical user interface without CUDA/GPU support.
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contents of relion-gui_2.1-1_amd64.deb (click to toggle)
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control file for relion_2.1-1_amd64.deb (click to toggle)
Package:relion
Version:2.1-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:6181
Depends:openmpi-gcc | openmpi-bin, libc6 (>=2.27), libfftw3-double3 (>=3.3.5), libgcc1 (>=1:3.0), libopenmpi3, libstdc++6 (>=5.2)
Conflicts:relion-cuda
Breaks:relion-bin, relion-bin+gui, relion-bin+mpi, relion-bin+mpi+gui
Replaces:relion-bin, relion-bin+gui, relion-bin+mpi, relion-bin+mpi+gui
Section:science
Priority:optional
Homepage:https://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page
Description:
toolkit for 3D reconstructions in cryo-electron microscopy
 RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone
 computer program for Maximum A Posteriori refinement of (multiple) 3D
 reconstructions or 2D class averages in cryo-electron microscopy.
 .
 RELION provides a GUI, several command-line tools in parallel (MPI) and serial
 versions, optionally with CUDA/GPU support.
 .
 relion provides the serial and parallel (MPI) command-line tools without
 CUDA/GPU support.
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contents of relion_2.1-1_amd64.deb (click to toggle)
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control file for relion-cuda-dbgsym_2.1-1_amd64.deb (click to toggle)
Package:relion-cuda-dbgsym
Source:relion
Version:2.1-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
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Depends:relion-cuda (=2.1-1)
Section:contrib/debug
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lintian 2.5.123~bpo9+1 check for relion-cuda-dbgsym_2.1-1_amd64.deb (click to toggle)
contents of relion-cuda-dbgsym_2.1-1_amd64.deb (click to toggle)
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lrwxrwxrwx root/root         0 2019-02-04 17:58 ./usr/share/doc/relion-cuda-dbgsym -> relion-cuda
control file for relion-gui-cuda-dbgsym_2.1-1_amd64.deb (click to toggle)
Package:relion-gui-cuda-dbgsym
Source:relion
Version:2.1-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:3446
Depends:relion-gui-cuda (=2.1-1)
Section:debug
Priority:optional
Description:
debug symbols for relion-gui-cuda
Build-Ids:3173b29028d01229f53be9bdf15f15f483c3008c 83afd07a344555860132002b57ee5372ddeb7993 a1c7c1566a35ff58db5ef7137aea534a16d16842 d490bade01df011faec9d22028f0c1d95d9d6180 f4ba4a7f4ad554c9f5410a9b2648fc2beaf0d27b
lintian 2.5.123~bpo9+1 check for relion-gui-cuda-dbgsym_2.1-1_amd64.deb (click to toggle)
contents of relion-gui-cuda-dbgsym_2.1-1_amd64.deb (click to toggle)
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lrwxrwxrwx root/root         0 2019-02-04 17:58 ./usr/share/doc/relion-gui-cuda-dbgsym -> relion-gui-cuda
control file for relion-gui-cuda_2.1-1_amd64.deb (click to toggle)
Package:relion-gui-cuda
Source:relion
Version:2.1-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:719
Depends:openmpi-gcc | openmpi-bin, relion-cuda, libc6 (>=2.14), libcufft9.2, libfftw3-double3 (>=3.3.5), libfltk-forms1.3, libfltk-images1.3, libfltk1.3 (>=1.3.4), libgcc1 (>=1:3.0), libopenmpi3, libstdc++6 (>=5.2), libx11-6, libxext6
Conflicts:relion-gui
Breaks:relion-bin, relion-bin+gui, relion-bin+mpi, relion-bin+mpi+gui
Replaces:relion-bin, relion-bin+gui, relion-bin+mpi, relion-bin+mpi+gui
Section:science
Priority:optional
Homepage:https://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page
Description:
parallel toolkit for 3D reconstructions in cryo-electron microscopy
 RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone
 computer program for Maximum A Posteriori refinement of (multiple) 3D
 reconstructions or 2D class averages in cryo-electron microscopy.
 .
 RELION provides a GUI, several command-line tools in parallel (MPI) and serial
 versions, optionally with CUDA/GPU support.
 .
 relion-gui-cuda provides the graphical user interface with CUDA/GPU support.
lintian 2.5.123~bpo9+1 check for relion-gui-cuda_2.1-1_amd64.deb (click to toggle)
O: relion-gui-cuda: package-name-doesnt-match-sonames librelion-gui-lib
O: relion-gui-cuda: binary-without-manpage usr/bin/relion
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O: relion-gui-cuda: binary-without-manpage usr/bin/relion_manualpick
O: relion-gui-cuda: binary-without-manpage usr/bin/relion_pipeliner
O: relion-gui-cuda: shlib-without-versioned-soname usr/lib/x86_64-linux-gnu/librelion_gui_lib.so librelion_gui_lib.so
contents of relion-gui-cuda_2.1-1_amd64.deb (click to toggle)
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control file for relion-gui-dbgsym_2.1-1_amd64.deb (click to toggle)
Package:relion-gui-dbgsym
Source:relion
Version:2.1-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:3446
Depends:relion-gui (=2.1-1)
Section:debug
Priority:optional
Description:
debug symbols for relion-gui
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contents of relion-gui-dbgsym_2.1-1_amd64.deb (click to toggle)
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lrwxrwxrwx root/root         0 2019-02-04 17:58 ./usr/share/doc/relion-gui-dbgsym -> relion-gui

Timestamp: 07.02.2019 / 15:07:20 (UTC)