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r-cran-treespace_1.0.0-1_amd64.changes (click to toggle)
Format:1.8
Date:Thu, 14 Sep 2017 19:55:53 +0200
Source:r-cran-treespace
Binary:r-cran-treespace
Architecture:source amd64
Version:1.0.0-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
r-cran-treespace - Statistical Exploration of Landscapes of Phylogenetic Trees
Closes:875810
Changes:
r-cran-treespace (1.0.0-1) unstable; urgency=medium

  * Initial release (closes: #875810)
Files:
d942620fcd43fcaf5d64223a215ef1e3 2382 gnu-r optional r-cran-treespace_1.0.0-1.dsc
31a5fa96d70ef2a17a33da363644566b 4067072 gnu-r optional r-cran-treespace_1.0.0.orig.tar.gz
489f22e29cec0a37795176a411f161d8 2792 gnu-r optional r-cran-treespace_1.0.0-1.debian.tar.xz
bd35bbc9a7bcb1c1b908e838d059bfbc 186564 debug optional r-cran-treespace-dbgsym_1.0.0-1_amd64.deb
2c2760dfa0853c1a1880f8e9295e6db4 12469 gnu-r optional r-cran-treespace_1.0.0-1_amd64.buildinfo
5db5741181f3a0867e0bbf083f92267a 2503666 gnu-r optional r-cran-treespace_1.0.0-1_amd64.deb
r-cran-treespace_1.0.0-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:r-cran-treespace
Binary:r-cran-treespace
Architecture:any
Version:1.0.0-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Andreas Tille <tille@debian.org>
Homepage:https://cran.r-project.org/package=treespace
Standards-Version:4.1.0
Vcs-Browser:https://anonscm.debian.org/git/debian-med/r-cran-treespace.git
Vcs-Git:https://anonscm.debian.org/git/debian-med/r-cran-treespace.git
Testsuite:autopkgtest
Testsuite-Triggers:r-cran-testthat
Build-Depends:debhelper (>=10), dh-r, r-base-dev, r-cran-ape, r-cran-ade4, r-cran-adegenet, r-cran-adegraphics, r-cran-adephylo, r-cran-combinat, r-cran-distory, r-cran-fields, r-cran-htmlwidgets, r-cran-mass, r-cran-phangorn, r-cran-rcpp, r-cran-rlumshiny, r-cran-scatterd3, r-cran-shiny, r-cran-shinybs
Package-List:r-cran-treespace deb gnu-r optional arch=any
Files:
31a5fa96d70ef2a17a33da363644566b 4067072 r-cran-treespace_1.0.0.orig.tar.gz
489f22e29cec0a37795176a411f161d8 2792 r-cran-treespace_1.0.0-1.debian.tar.xz
lintian check for r-cran-treespace_1.0.0-1.dsc (click to toggle)
W: r-cran-treespace source: newer-standards-version 4.1.0 (current is 3.9.8)
README.source for r-cran-treespace_1.0.0-1.dsc (click to toggle)
Explanation for binary files inside source package according to
  http://lists.debian.org/debian-devel/2013/09/msg00332.html

Files: data/DengueBEASTMCC.RData
Documented: man/DengueBEASTMCC.Rd
  Dengue fever BEAST MCC tree
  http://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2148-7-214

Files: data/DengueSeqs.RData
Documented: man/DengueSeqs.Rd
  Dengue fever sequences
  http://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2148-7-214

Files: data/DengueTrees.RData
Documented: man/DengueTrees.Rd
  BEAST analysis of Dengue fever
  http://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2148-7-214

Files: data/fluTrees.RData
Documented: man/fluTrees.Rd
  BEAST analysis of seasonal influenza (A/H3N2)
  http://beast.bio.ed.ac.uk/tutorials

Files: data/woodmiceTrees.RData
Documented: man/woodmiceTrees.Rd
  Bootstrap trees from woodmouse dataset
  A set of 15 sequences of the mitochondrial gene cytochrome b of the
  woodmouse (Apodemus sylvaticus) which is a subset of the data analysed by
  Michaux et al. (2003). The full data set is available through GenBank
  (accession numbers AJ511877 to AJ511987)

 -- Andreas Tille <tille@debian.org>  Fri, 08 Sep 2017 11:32:19 +0200
control file for r-cran-treespace-dbgsym_1.0.0-1_amd64.deb (click to toggle)
Package:r-cran-treespace-dbgsym
Source:r-cran-treespace
Version:1.0.0-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:206
Depends:r-cran-treespace (=1.0.0-1)
Section:debug
Priority:optional
Description:
debug symbols for r-cran-treespace
Build-Ids:3f62f25e58d43a6ddd260a220651448269b7d8fc
lintian check for r-cran-treespace-dbgsym_1.0.0-1_amd64.deb (click to toggle)
contents of r-cran-treespace-dbgsym_1.0.0-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2017-09-14 17:55 ./
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/lib/
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/lib/debug/
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/lib/debug/.build-id/3f/
-rw-r--r-- root/root    199712 2017-09-14 17:55 ./usr/lib/debug/.build-id/3f/62f25e58d43a6ddd260a220651448269b7d8fc.debug
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/share/
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/share/doc/
lrwxrwxrwx root/root         0 2017-09-14 17:55 ./usr/share/doc/r-cran-treespace-dbgsym -> r-cran-treespace
control file for r-cran-treespace_1.0.0-1_amd64.deb (click to toggle)
Package:r-cran-treespace
Version:1.0.0-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:4413
Depends:r-base-core (>=3.4.1-2), r-api-3, r-cran-ape, r-cran-ade4, r-cran-adegenet, r-cran-adegraphics, r-cran-adephylo, r-cran-combinat, r-cran-distory, r-cran-fields, r-cran-htmlwidgets, r-cran-mass, r-cran-phangorn, r-cran-rcpp, r-cran-rlumshiny, r-cran-scatterd3, r-cran-shiny, r-cran-shinybs, libc6 (>=2.14), libgcc1 (>=1:3.0), libstdc++6 (>=5.2)
Suggests:r-cran-igraph, r-cran-rcolorbrewer, r-cran-ggplot2, r-cran-testthat, r-cran-knitr, r-cran-rgl
Section:gnu-r
Priority:optional
Homepage:https://cran.r-project.org/package=treespace
Description:
Statistical Exploration of Landscapes of Phylogenetic Trees
 Tools for the exploration of distributions of phylogenetic trees.
 This package includes a shiny interface which can be started from R using
 'treespaceServer()'.
lintian check for r-cran-treespace_1.0.0-1_amd64.deb (click to toggle)
contents of r-cran-treespace_1.0.0-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2017-09-14 17:55 ./
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/lib/
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/lib/R/
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/lib/R/site-library/
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/
-rw-r--r-- root/root      1523 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/DESCRIPTION
-rw-r--r-- root/root      1203 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/INDEX
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/Meta/
-rw-r--r-- root/root       894 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/Meta/Rd.rds
-rw-r--r-- root/root       225 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/Meta/data.rds
-rw-r--r-- root/root       112 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/Meta/features.rds
-rw-r--r-- root/root       816 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/Meta/hsearch.rds
-rw-r--r-- root/root       361 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/Meta/links.rds
-rw-r--r-- root/root       773 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/Meta/nsInfo.rds
-rw-r--r-- root/root      1445 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/Meta/package.rds
-rw-r--r-- root/root       318 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/Meta/vignette.rds
-rw-r--r-- root/root      1563 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/NAMESPACE
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/R/
-rw-r--r-- root/root      1056 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/R/treespace
-rw-r--r-- root/root     25879 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/R/treespace.rdb
-rw-r--r-- root/root       522 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/R/treespace.rdx
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/data/
-rw-r--r-- root/root    850309 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/data/Rdata.rdb
-rw-r--r-- root/root       125 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/data/Rdata.rds
-rw-r--r-- root/root       214 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/data/Rdata.rdx
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/doc/
-rw-r--r-- root/root      8869 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/doc/DengueVignette.R
-rw-r--r-- root/root     12557 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/doc/DengueVignette.Rmd
-rw-r--r-- root/root   1374332 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/doc/DengueVignette.html
-rw-r--r-- root/root      4797 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/doc/TransmissionTreesVignette.R
-rw-r--r-- root/root      8024 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/doc/TransmissionTreesVignette.Rmd
-rw-r--r-- root/root    172055 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/doc/TransmissionTreesVignette.html
-rw-r--r-- root/root      2531 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/doc/index.html
-rw-r--r-- root/root      5345 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/doc/introduction.R
-rw-r--r-- root/root     16496 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/doc/introduction.Rmd
-rw-r--r-- root/root   1546276 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/doc/introduction.html
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/help/
-rw-r--r-- root/root       468 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/help/AnIndex
-rw-r--r-- root/root       232 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/help/aliases.rds
-rw-r--r-- root/root       285 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/help/paths.rds
-rw-r--r-- root/root     49864 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/help/treespace.rdb
-rw-r--r-- root/root       607 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/help/treespace.rdx
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-rw-r--r-- root/root      3597 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/html/00Index.html
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-rw-r--r-- root/root     60320 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/libs/treespace.so
drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/shiny/
-rw-r--r-- root/root     36093 2017-09-14 17:55 ./usr/lib/R/site-library/treespace/shiny/server.R
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drwxr-xr-x root/root         0 2017-09-14 17:55 ./usr/share/doc/
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-rw-r--r-- root/root       150 2017-09-14 17:55 ./usr/share/doc/r-cran-treespace/README.Debian
-rw-r--r-- root/root       277 2017-09-14 17:55 ./usr/share/doc/r-cran-treespace/README.test
-rw-r--r-- root/root       159 2017-09-14 17:55 ./usr/share/doc/r-cran-treespace/changelog.Debian.gz
-rw-r--r-- root/root      1431 2017-09-14 17:55 ./usr/share/doc/r-cran-treespace/copyright
-rw-r--r-- root/root       361 2017-09-14 17:55 ./usr/share/doc/r-cran-treespace/run-unit-test
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Timestamp: 14.09.2017 / 21:01:27 (UTC)