Debian NEW package overview for r-cran-gap
| r-cran-gap_1.6+dfsg-1_amd64.changes (click to toggle) | |
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| Format: | 1.8 |
| Date: | Mon, 27 Jan 2025 12:29:14 +0100 |
| Source: | r-cran-gap |
| Binary: | r-cran-gap r-cran-gap-dbgsym |
| Architecture: | source amd64 |
| Version: | 1.6+dfsg-1 |
| Distribution: | unstable |
| Urgency: | medium |
| Maintainer: | Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net> |
| Changed-By: | Michael R. Crusoe <crusoe@debian.org> |
| Description: | r-cran-gap - Genetic Analysis Package |
| Closes: | 1094342 |
| Changes: | r-cran-gap (1.6+dfsg-1) unstable; urgency=medium * Initial release (Closes: #1094342) |
| Files: | b4421a32d6eae21ed5c32308f8bc358e 2087 gnu-r optional r-cran-gap_1.6+dfsg-1.dsc 24ee4d788498070d4e1351c959144307 737488 gnu-r optional r-cran-gap_1.6+dfsg.orig.tar.xz fae294a9905cec13cafa2b1e2d871305 2904 gnu-r optional r-cran-gap_1.6+dfsg-1.debian.tar.xz 23b7175614c1b5b1a1b55069735510a2 175108 debug optional r-cran-gap-dbgsym_1.6+dfsg-1_amd64.deb cb4e63d05541ee35bb61982512d34fa5 15193 gnu-r optional r-cran-gap_1.6+dfsg-1_amd64.buildinfo a4ba281c80a47ead891c5af2199b500e 1096820 gnu-r optional r-cran-gap_1.6+dfsg-1_amd64.deb |
| r-cran-gap_1.6+dfsg-1.dsc (click to toggle) | |
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| Format: | 3.0 (quilt) |
| Source: | r-cran-gap |
| Binary: | r-cran-gap |
| Architecture: | any |
| Version: | 1.6+dfsg-1 |
| Maintainer: | Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net> |
| Uploaders: | Michael R. Crusoe <crusoe@debian.org> |
| Homepage: | https://cran.r-project.org/package=gap |
| Standards-Version: | 4.7.0 |
| Vcs-Browser: | https://salsa.debian.org/r-pkg-team/r-cran-gap |
| Vcs-Git: | https://salsa.debian.org/r-pkg-team/r-cran-gap.git |
| Testsuite: | autopkgtest-pkg-r |
| Build-Depends: | debhelper-compat (=13), dh-r, r-base-dev, r-cran-dplyr, r-cran-ggplot2, r-cran-plotly, r-cran-rdpack, r-cran-gap.datasets |
| Package-List: | r-cran-gap deb gnu-r optional arch=any |
| Files: | 24ee4d788498070d4e1351c959144307 737488 r-cran-gap_1.6+dfsg.orig.tar.xz fae294a9905cec13cafa2b1e2d871305 2904 r-cran-gap_1.6+dfsg-1.debian.tar.xz |
| README.source for r-cran-gap_1.6+dfsg-1.dsc (click to toggle) | |
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Explanation for binary files inside source package according to https://lists.debian.org/debian-devel/2013/09/msg00332.html Files: data/hg18.rda Documented: man/hg18.Rd Chromosomal lengths for build 36 Files: data/hg19.rda Documented: man/hg19.Rd Chromosomal lengths for build 37 Files: data/hg38.rda Documented: man/hg38.Rd Chromosomal lengths for build 38 -- Michael R. Crusoe <crusoe@debian.org> Mon, 27 Jan 2025 11:36:20 +0100 | |
| control file for r-cran-gap_1.6+dfsg-1_amd64.deb (click to toggle) | |
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| Package: | r-cran-gap |
| Version: | 1.6+dfsg-1 |
| Architecture: | amd64 |
| Maintainer: | Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net> |
| Installed-Size: | 1471 |
| Depends: | r-api-4.0, r-cran-gap.datasets (>=0.0.6), r-cran-dplyr, r-cran-ggplot2, r-cran-plotly, r-cran-rdpack, libc6 (>=2.29) |
| Suggests: | r-cran-bradleyterry2, r-cran-diagrammer, r-cran-mass, r-cran-matrix, r-cran-bdsmatrix, r-cran-bookdown, r-cran-calibrate, r-cran-circlize, r-cran-coda, r-cran-cowplot, r-cran-foreign, r-cran-genetics, r-cran-haplo.stats, r-cran-htmlwidgets, r-cran-jsonlite, r-cran-knitr, r-cran-lattice, r-cran-magic, r-cran-matrixstats, r-cran-metafor, r-cran-nlme, r-cran-plotrix, r-cran-readr, r-cran-reshape, r-cran-rmarkdown, r-cran-rms, r-cran-survival |
| Section: | gnu-r |
| Priority: | optional |
| Homepage: | https://cran.r-project.org/package=gap |
| Description: | Genetic Analysis Package As first reported [Zhao, J. H. 2007. "gap: Genetic Analysis Package". J Stat Soft 23(8):1-18. <doi:10.18637/jss.v023.i08>], it is designed as an integrated package for genetic data analysis of both population and family data. Currently, it contains functions for sample size calculations of both population-based and family-based designs, probability of familial disease aggregation, kinship calculation, statistics in linkage analysis, and association analysis involving genetic markers including haplotype analysis with or without environmental covariates. Over years, the package has been developed in- between many projects hence also in line with the name (gap). |
| contents of r-cran-gap_1.6+dfsg-1_amd64.deb (click to toggle) | |
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drwxr-xr-x root/root 0 2025-01-27 11:29 ./ drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/ drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/ drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/ drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/gap/ -rw-r--r-- root/root 1224 2025-01-27 11:29 ./usr/lib/R/site-library/gap/CITATION -rw-r--r-- root/root 2356 2025-01-27 11:29 ./usr/lib/R/site-library/gap/DESCRIPTION -rw-r--r-- root/root 8071 2025-01-27 11:29 ./usr/lib/R/site-library/gap/INDEX drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/gap/JAGS/ -rw-r--r-- root/root 398 2025-01-27 11:29 ./usr/lib/R/site-library/gap/JAGS/h2.jags -rw-r--r-- root/root 946 2025-01-27 11:29 ./usr/lib/R/site-library/gap/JAGS/hwe.jags drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/gap/Meta/ -rw-r--r-- root/root 4193 2025-01-27 11:29 ./usr/lib/R/site-library/gap/Meta/Rd.rds -rw-r--r-- root/root 138 2025-01-27 11:29 ./usr/lib/R/site-library/gap/Meta/data.rds -rw-r--r-- root/root 116 2025-01-27 11:29 ./usr/lib/R/site-library/gap/Meta/demo.rds -rw-r--r-- root/root 132 2025-01-27 11:29 ./usr/lib/R/site-library/gap/Meta/features.rds -rw-r--r-- root/root 3653 2025-01-27 11:29 ./usr/lib/R/site-library/gap/Meta/hsearch.rds -rw-r--r-- root/root 1427 2025-01-27 11:29 ./usr/lib/R/site-library/gap/Meta/links.rds -rw-r--r-- root/root 1340 2025-01-27 11:29 ./usr/lib/R/site-library/gap/Meta/nsInfo.rds -rw-r--r-- root/root 2038 2025-01-27 11:29 ./usr/lib/R/site-library/gap/Meta/package.rds -rw-r--r-- root/root 275 2025-01-27 11:29 ./usr/lib/R/site-library/gap/Meta/vignette.rds -rw-r--r-- root/root 3444 2025-01-27 11:29 ./usr/lib/R/site-library/gap/NAMESPACE drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/gap/R/ -rw-r--r-- root/root 1058 2025-01-27 11:29 ./usr/lib/R/site-library/gap/R/gap -rw-r--r-- root/root 394253 2025-01-27 11:29 ./usr/lib/R/site-library/gap/R/gap.rdb -rw-r--r-- root/root 2548 2025-01-27 11:29 ./usr/lib/R/site-library/gap/R/gap.rdx -rw-r--r-- root/root 454 2025-01-27 11:29 ./usr/lib/R/site-library/gap/README.md -rw-r--r-- root/root 36761 2025-01-27 11:29 ./usr/lib/R/site-library/gap/REFERENCES.bib drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/gap/data/ -rw-r--r-- root/root 558 2025-01-27 11:29 ./usr/lib/R/site-library/gap/data/Rdata.rdb -rw-r--r-- root/root 103 2025-01-27 11:29 ./usr/lib/R/site-library/gap/data/Rdata.rds -rw-r--r-- root/root 174 2025-01-27 11:29 ./usr/lib/R/site-library/gap/data/Rdata.rdx -rw-r--r-- root/root 15 2025-01-27 11:29 ./usr/lib/R/site-library/gap/data/datalist drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/gap/demo/ -rw-r--r-- root/root 2393 2025-01-27 11:29 ./usr/lib/R/site-library/gap/demo/gap.R drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/gap/doc/ -rw-r--r-- root/root 20732 2025-01-27 11:29 ./usr/lib/R/site-library/gap/doc/gap.R -rw-r--r-- root/root 48105 2025-01-27 11:29 ./usr/lib/R/site-library/gap/doc/gap.Rmd -rw-r--r-- root/root 2246 2025-01-27 11:29 ./usr/lib/R/site-library/gap/doc/index.html -rw-r--r-- root/root 43085 2025-01-27 11:29 ./usr/lib/R/site-library/gap/doc/jss.Rnw -rw-r--r-- root/root 170012 2025-01-27 11:29 ./usr/lib/R/site-library/gap/doc/jss.pdf -rw-r--r-- root/root 4156 2025-01-27 11:29 ./usr/lib/R/site-library/gap/doc/shinygap.Rmd drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/gap/help/ -rw-r--r-- root/root 2076 2025-01-27 11:29 ./usr/lib/R/site-library/gap/help/AnIndex -rw-r--r-- root/root 844 2025-01-27 11:29 ./usr/lib/R/site-library/gap/help/aliases.rds -rw-r--r-- root/root 346609 2025-01-27 11:29 ./usr/lib/R/site-library/gap/help/gap.rdb -rw-r--r-- root/root 2573 2025-01-27 11:29 ./usr/lib/R/site-library/gap/help/gap.rdx -rw-r--r-- root/root 937 2025-01-27 11:29 ./usr/lib/R/site-library/gap/help/paths.rds drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/gap/html/ -rw-r--r-- root/root 17294 2025-01-27 11:29 ./usr/lib/R/site-library/gap/html/00Index.html -rw-r--r-- root/root 1844 2025-01-27 11:29 ./usr/lib/R/site-library/gap/html/R.css drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/gap/libs/ -rw-r--r-- root/root 208528 2025-01-27 11:29 ./usr/lib/R/site-library/gap/libs/gap.so drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/gap/ms/ -rw-r--r-- root/root 116 2025-01-27 11:29 ./usr/lib/R/site-library/gap/ms/clms -rw-r--r-- root/root 33339 2025-01-27 11:29 ./usr/lib/R/site-library/gap/ms/ms.c -rw-r--r-- root/root 513 2025-01-27 11:29 ./usr/lib/R/site-library/gap/ms/ms.h -rw-r--r-- root/root 2176 2025-01-27 11:29 ./usr/lib/R/site-library/gap/ms/msdoc.txt -rw-r--r-- root/root 1225 2025-01-27 11:29 ./usr/lib/R/site-library/gap/ms/rand1.c -rw-r--r-- root/root 816 2025-01-27 11:29 ./usr/lib/R/site-library/gap/ms/rand2.c -rw-r--r-- root/root 20080 2025-01-27 11:29 ./usr/lib/R/site-library/gap/ms/streec.c -rw-r--r-- root/root 43 2025-01-27 11:29 ./usr/lib/R/site-library/gap/ms/www drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/gap/scripts/ -rw-r--r-- root/root 924 2025-01-27 11:29 ./usr/lib/R/site-library/gap/scripts/GRCh.R -rwxr-xr-x root/root 2569 2025-01-27 11:29 ./usr/lib/R/site-library/gap/scripts/pedtodot.sh drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/gap/shinygap/ -rw-r--r-- root/root 144 2025-01-27 11:29 ./usr/lib/R/site-library/gap/shinygap/DESCRIPTION drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/gap/shinygap/R/ -rw-r--r-- root/root 6221 2025-01-27 11:29 ./usr/lib/R/site-library/gap/shinygap/R/global.R -rw-r--r-- root/root 4708 2025-01-27 11:29 ./usr/lib/R/site-library/gap/shinygap/README.md drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/gap/shinygap/rsconnect/ drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/gap/shinygap/rsconnect/shinyapps.io/ drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/R/site-library/gap/shinygap/rsconnect/shinyapps.io/jinghuazhao/ -rw-r--r-- root/root 245 2025-01-27 11:29 ./usr/lib/R/site-library/gap/shinygap/rsconnect/shinyapps.io/jinghuazhao/shinygap.dcf -rw-r--r-- root/root 10457 2025-01-27 11:29 ./usr/lib/R/site-library/gap/shinygap/server.R -rw-r--r-- root/root 8919 2025-01-27 11:29 ./usr/lib/R/site-library/gap/shinygap/ui.R drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/share/ drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/share/doc/r-cran-gap/ -rw-r--r-- root/root 164 2025-01-27 11:29 ./usr/share/doc/r-cran-gap/changelog.Debian.gz -rw-r--r-- root/root 11987 2024-08-26 08:09 ./usr/share/doc/r-cran-gap/changelog.gz -rw-r--r-- root/root 2244 2025-01-27 11:17 ./usr/share/doc/r-cran-gap/copyright | |
| copyright of r-cran-gap_1.6+dfsg-1_amd64.deb (click to toggle) | |
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Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: gap Upstream-Contact: Jing Hua Zhao <jinghuazhao@hotmail.com> Source: https://cran.r-project.org/package=gap Files-Excluded: inst/doc/*.html Files: * Copyright: 2004-2024 Jing Hua Zhao <jinghuazhao@hotmail.com>, Kurt Hornik, Brian Ripley, Uwe Ligges, Achim Zeileis 2001-2005 University College London License: GPL-2+ Files: inst/shinygap/* Copyright: Jing Hua Zhao License: Expat Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: . The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. . THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. Files: debian/* Copyright: 2025 Michael R. Crusoe <crusoe@debian.org> License: GPL-2+ License: GPL-2+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . On Debian systems you can find the full text of the GNU General Public License version 2 at /usr/share/common-licenses/GPL-2. | |
| control file for r-cran-gap-dbgsym_1.6+dfsg-1_amd64.deb (click to toggle) | |
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| Package: | r-cran-gap-dbgsym |
| Source: | r-cran-gap |
| Version: | 1.6+dfsg-1 |
| Auto-Built-Package: | debug-symbols |
| Architecture: | amd64 |
| Maintainer: | Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net> |
| Installed-Size: | 193 |
| Depends: | r-cran-gap (=1.6+dfsg-1) |
| Section: | debug |
| Priority: | optional |
| Description: | debug symbols for r-cran-gap |
| Build-Ids: | 558654947c2334a0559050cd29f1c2a9a7d873f0 |
| contents of r-cran-gap-dbgsym_1.6+dfsg-1_amd64.deb (click to toggle) | |
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drwxr-xr-x root/root 0 2025-01-27 11:29 ./ drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/ drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/ drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/lib/debug/.build-id/55/ -rw-r--r-- root/root 187120 2025-01-27 11:29 ./usr/lib/debug/.build-id/55/8654947c2334a0559050cd29f1c2a9a7d873f0.debug drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/share/ drwxr-xr-x root/root 0 2025-01-27 11:29 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-01-27 11:29 ./usr/share/doc/r-cran-gap-dbgsym -> r-cran-gap | |
| copyright of r-cran-gap-dbgsym_1.6+dfsg-1_amd64.deb (click to toggle) | |
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WARNING: No copyright found, please check package manually. | |
Timestamp: 27.01.2025 / 13:07:31 (UTC)