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r-bioc-rsubread_2.2.2-1_amd64.changes (click to toggle)
Format:1.8
Date:Thu, 11 Jun 2020 13:44:48 +0200
Source:r-bioc-rsubread
Binary:r-bioc-rsubread r-bioc-rsubread-dbgsym
Architecture:source amd64
Version:2.2.2-1
Distribution:unstable
Urgency:medium
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
r-bioc-rsubread - Subread Sequence Alignment and Counting for R
Closes:962657
Changes:
r-bioc-rsubread (2.2.2-1) unstable; urgency=medium

  * Initial release (closes: #962657)

  * Second upload fixes a missing copyright by Indiana university in
    ./src/HelperFunctions.c - mystery-spotted by FTPadmin Thorsten.
    Many thanks!

    Took this opportunity to change the license from GPL-3 to GPL-3+
    since whenever the GPL-header was put into the source tree, this
    read "or any later version". Informed all three upstream authors
    with a request to clear this up in the DESCRIPTION file as
    GPL (>= 3.0).
Files:
ebf963eb07d248d11cf04ff521d97081 2094 gnu-r optional r-bioc-rsubread_2.2.2-1.dsc
f40ccbd747f340425bdbeb4335a70cda 10826456 gnu-r optional r-bioc-rsubread_2.2.2.orig.tar.gz
716d9b60662c270364f92b05811ee0d4 3336 gnu-r optional r-bioc-rsubread_2.2.2-1.debian.tar.xz
b29208915010ec613e788f7287417151 1003500 debug optional r-bioc-rsubread-dbgsym_2.2.2-1_amd64.deb
2b9f4110280c576033847794c885dfb1 9899 gnu-r optional r-bioc-rsubread_2.2.2-1_amd64.buildinfo
055d38605eb2b2724cdb97eb1bfe608b 7302216 gnu-r optional r-bioc-rsubread_2.2.2-1_amd64.deb
r-bioc-rsubread_2.2.2-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:r-bioc-rsubread
Binary:r-bioc-rsubread
Architecture:any
Version:2.2.2-1
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders:Steffen Moeller <moeller@debian.org>
Homepage:https://bioconductor.org/packages/Rsubread/
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/r-pkg-team/r-bioc-rsubread
Vcs-Git:https://salsa.debian.org/r-pkg-team/r-bioc-rsubread.git
Testsuite:autopkgtest-pkg-r
Build-Depends:debhelper-compat (=12), dh-r, r-base-dev, r-cran-matrix
Package-List:r-bioc-rsubread deb gnu-r optional arch=any
Files:
f40ccbd747f340425bdbeb4335a70cda 10826456 r-bioc-rsubread_2.2.2.orig.tar.gz
716d9b60662c270364f92b05811ee0d4 3336 r-bioc-rsubread_2.2.2-1.debian.tar.xz
lintian 2.79.0~bpo10+1 check for r-bioc-rsubread_2.2.2-1.dsc (click to toggle)
README.source for r-bioc-rsubread_2.2.2-1.dsc (click to toggle)
No README.source in this package
control file for r-bioc-rsubread_2.2.2-1_amd64.deb (click to toggle)
Package:r-bioc-rsubread
Version:2.2.2-1
Architecture:amd64
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size:34951
Depends:r-base-core (>=4.0.1-1), r-api-4.0, r-api-bioc-3.11, r-cran-matrix, libc6 (>=2.14), zlib1g (>=1:1.2.2.4)
Section:gnu-r
Priority:optional
Homepage:https://bioconductor.org/packages/Rsubread/
Description:
Subread Sequence Alignment and Counting for R
 Alignment, quantification and analysis of second and third generation
 sequencing data. Includes functionality for read mapping, read counting,
 SNP calling, structural variant detection and gene fusion discovery.
 .
 Can be applied to all major sequencing techologies and to both short
 and long sequence reads.
lintian 2.79.0~bpo10+1 check for r-bioc-rsubread_2.2.2-1_amd64.deb (click to toggle)
contents of r-bioc-rsubread_2.2.2-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-11 11:44 ./
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/lib/
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/lib/R/
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/lib/R/site-library/
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/
-rw-r--r-- root/root       562 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/CITATION
-rw-r--r-- root/root      1417 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/DESCRIPTION
-rw-r--r-- root/root      1896 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/INDEX
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/Meta/
-rw-r--r-- root/root      1198 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/Meta/Rd.rds
-rw-r--r-- root/root       123 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/Meta/features.rds
-rw-r--r-- root/root      1219 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/Meta/hsearch.rds
-rw-r--r-- root/root       482 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/Meta/links.rds
-rw-r--r-- root/root       374 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/Meta/nsInfo.rds
-rw-r--r-- root/root      1117 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/Meta/package.rds
-rw-r--r-- root/root       212 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/Meta/vignette.rds
-rw-r--r-- root/root       349 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/NAMESPACE
-rw-r--r-- root/root      2655 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/NEWS.Rd
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/R/
-rw-r--r-- root/root      1056 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/R/Rsubread
-rw-r--r-- root/root    106497 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/R/Rsubread.rdb
-rw-r--r-- root/root      1093 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/R/Rsubread.rdx
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/annot/
-rw-r--r-- root/root   7171176 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/annot/hg19_RefSeq_exon.txt
-rw-r--r-- root/root   8374242 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/annot/hg38_RefSeq_exon.txt
-rw-r--r-- root/root   7246621 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/annot/mm10_RefSeq_exon.txt
-rw-r--r-- root/root   7104174 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/annot/mm9_RefSeq_exon.txt
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/doc/
-rw-r--r-- root/root      2116 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/doc/Rsubread.R
-rw-r--r-- root/root      9727 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/doc/Rsubread.Rnw
-rw-r--r-- root/root    110475 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/doc/Rsubread.pdf
-rw-r--r-- root/root    668351 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/doc/SubreadUsersGuide.pdf
-rw-r--r-- root/root      1631 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/doc/index.html
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/extdata/
-rw-r--r-- root/root     25454 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/extdata/longreads.txt.gz
-rw-r--r-- root/root     81556 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/extdata/reads.txt.gz
-rw-r--r-- root/root     81556 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/extdata/reads1.txt.gz
-rw-r--r-- root/root     81551 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/extdata/reads2.txt.gz
-rw-r--r-- root/root     90911 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/extdata/reference.fa
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/help/
-rw-r--r-- root/root       595 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/help/AnIndex
-rw-r--r-- root/root     91031 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/help/Rsubread.rdb
-rw-r--r-- root/root       708 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/help/Rsubread.rdx
-rw-r--r-- root/root       324 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/help/aliases.rds
-rw-r--r-- root/root       383 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/help/paths.rds
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/html/
-rw-r--r-- root/root      4479 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/html/00Index.html
-rw-r--r-- root/root      1335 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/html/R.css
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/libs/
-rw-r--r-- root/root    926560 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/libs/Rsubread.so
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/qualf/
-rw-r--r-- root/root   2020000 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt
-rw-r--r-- root/root   1520000 2020-06-11 11:44 ./usr/lib/R/site-library/Rsubread/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/share/
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/share/doc/r-bioc-rsubread/
-rw-r--r-- root/root       432 2020-06-11 11:44 ./usr/share/doc/r-bioc-rsubread/changelog.Debian.gz
-rw-r--r-- root/root      8892 2020-06-11 11:44 ./usr/share/doc/r-bioc-rsubread/changelog.gz
-rw-r--r-- root/root      3402 2020-06-11 11:44 ./usr/share/doc/r-bioc-rsubread/copyright
control file for r-bioc-rsubread-dbgsym_2.2.2-1_amd64.deb (click to toggle)
Package:r-bioc-rsubread-dbgsym
Source:r-bioc-rsubread
Version:2.2.2-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size:1039
Depends:r-bioc-rsubread (=2.2.2-1)
Section:debug
Priority:optional
Description:
debug symbols for r-bioc-rsubread
Build-Ids:b97dd44738ba88d96933c8ed38ead6fd8da309bb
lintian 2.79.0~bpo10+1 check for r-bioc-rsubread-dbgsym_2.2.2-1_amd64.deb (click to toggle)
contents of r-bioc-rsubread-dbgsym_2.2.2-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-11 11:44 ./
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/lib/
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/lib/debug/.build-id/b9/
-rw-r--r-- root/root   1053040 2020-06-11 11:44 ./usr/lib/debug/.build-id/b9/7dd44738ba88d96933c8ed38ead6fd8da309bb.debug
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/share/
drwxr-xr-x root/root         0 2020-06-11 11:44 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-06-11 11:44 ./usr/share/doc/r-bioc-rsubread-dbgsym -> r-bioc-rsubread

Timestamp: 23.06.2020 / 23:01:15 (UTC)