Debian NEW package overview for r-bioc-rcpi
r-bioc-rcpi_1.28.0+ds-1_amd64.changes (click to toggle)
Format:1.8
Date:Sat, 02 Oct 2021 01:09:12 +0200
Source:r-bioc-rcpi
Binary:r-bioc-rcpi
Architecture:source all
Version:1.28.0+ds-1
Distribution:unstable
Urgency:medium
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
r-bioc-rcpi - molecular informatics toolkit for compound-protein interaction
Closes:954851
Changes:
r-bioc-rcpi (1.28.0+ds-1) unstable; urgency=medium

  [ Andreas Tille ]
  * Initial release (closes: #954851)

  [ Steffen Moeller ]
  * New upstream version
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.
Files:
2509064a066c537862568c4f60a258fc 2251 gnu-r optional r-bioc-rcpi_1.28.0+ds-1.dsc
f6948d9b22fcceeffd5f7badc8aa53da 1462796 gnu-r optional r-bioc-rcpi_1.28.0+ds.orig.tar.xz
ef7f425d766821fa3cd89f5e2324f38b 6276 gnu-r optional r-bioc-rcpi_1.28.0+ds-1.debian.tar.xz
5dd871b19f0499b0d13afeebadf36ce4 1120944 gnu-r optional r-bioc-rcpi_1.28.0+ds-1_all.deb
d9cf040e752c14840678ce7cc90cb242 20768 gnu-r optional r-bioc-rcpi_1.28.0+ds-1_amd64.buildinfo
r-bioc-rcpi_1.28.0+ds-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:r-bioc-rcpi
Binary:r-bioc-rcpi
Architecture:all
Version:1.28.0+ds-1
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders:Andreas Tille <tille@debian.org>, Steffen Moeller <moeller@debian.org>
Homepage:https://bioconductor.org/packages/Rcpi/
Standards-Version:4.6.0
Vcs-Browser:https://salsa.debian.org/r-pkg-team/r-bioc-rcpi
Vcs-Git:https://salsa.debian.org/r-pkg-team/r-bioc-rcpi.git
Testsuite:autopkgtest, autopkgtest-pkg-r
Testsuite-Triggers:r-cran-runit
Build-Depends:debhelper-compat (=13), dh-r, r-base-dev, r-cran-rcurl, r-cran-rjson, r-cran-foreach, r-cran-doparallel, r-bioc-biostrings, r-bioc-gosemsim, r-bioc-chemminer, r-bioc-fmcsr, r-cran-rcdk
Package-List:r-bioc-rcpi deb gnu-r optional arch=all
Files:
f6948d9b22fcceeffd5f7badc8aa53da 1462796 r-bioc-rcpi_1.28.0+ds.orig.tar.xz
ef7f425d766821fa3cd89f5e2324f38b 6276 r-bioc-rcpi_1.28.0+ds-1.debian.tar.xz
lintian 2.94.0~bpo10+1 check for r-bioc-rcpi_1.28.0+ds-1.dsc (click to toggle)
README.source for r-bioc-rcpi_1.28.0+ds-1.dsc (click to toggle)
Explanation for binary files inside source package according to
  https://lists.debian.org/debian-devel/2013/09/msg00332.html

Files: data/AA2DACOR.rda
Documented: man/AA2DACOR.Rd
  2D Autocorrelations Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AA3DMoRSE.rda
Documented: man/AA3DMoRSE.Rd
  3D-MoRSE Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AAACF.rda
Documented: man/AAACF.Rd
  Atom-Centred Fragments Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AABLOSUM100.rda
Documented: man/AABLOSUM100.Rd
  BLOSUM100 Matrix for 20 Amino Acids

Files: data/AABLOSUM45.rda
Documented: man/AABLOSUM45.Rd
  BLOSUM45 Matrix for 20 Amino Acids

Files: data/AABLOSUM50.rda
Documented: man/AABLOSUM50.Rd
  BLOSUM50 Matrix for 20 Amino Acids

Files: data/AABLOSUM62.rda
Documented: man/AABLOSUM62.Rd
  BLOSUM62 Matrix for 20 Amino Acids

Files: data/AABLOSUM80.rda
Documented: man/AABLOSUM80.Rd
  BLOSUM80 Matrix for 20 Amino Acids

Files: data/AABurden.rda
Documented: man/AABurden.Rd
  Burden Eigenvalues Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AAConn.rda
Documented: man/AAConn.Rd
  Connectivity Indices Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AAConst.rda
Documented: man/AAConst.Rd
  Constitutional Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AACPSA.rda
Documented: man/AACPSA.Rd
  CPSA Descriptors for 20 Amino Acids calculated by Discovery Studio

Files: data/AADescAll.rda
Documented: man/AADescAll.Rd
  All 2D Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AAEdgeAdj.rda
Documented: man/AAEdgeAdj.Rd
  Edge Adjacency Indices Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AAEigIdx.rda
Documented: man/AAEigIdx.Rd
  Eigenvalue-Based Indices Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AAFGC.rda
Documented: man/AAFGC.Rd
  Functional Group Counts Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AAGeom.rda
Documented: man/AAGeom.Rd
  Geometrical Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AAGETAWAY.rda
Documented: man/AAGETAWAY.Rd
  GETAWAY Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AAindex.rda
Documented: man/AAindex.Rd
  AAindex Data of 544 Physicochemical and Biological Properties

Files: data/AAInfo.rda
Documented: man/AAInfo.Rd
  Information Indices Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AAMetaInfo.rda
Documented: man/AAMetaInfo.Rd
  Meta Information for the 20 Amino Acids

Files: data/AAMOE2D.rda
Documented: man/AAMOE2D.Rd
  2D Descriptors for 20 Amino Acids calculated by MOE 2011.10

Files: data/AAMOE3D.rda
Documented: man/AAMOE3D.Rd
  3D Descriptors for 20 Amino Acids calculated by MOE 2011.10

Files: data/AAMolProp.rda
Documented: man/AAMolProp.Rd
  Molecular Properties Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AAPAM120.rda
Documented: man/AAPAM120.Rd
  PAM120 Matrix for 20 Amino Acids

Files: data/AAPAM250.rda
Documented: man/AAPAM250.Rd
  PAM250 Matrix for 20 Amino Acids

Files: data/AAPAM30.rda
Documented: man/AAPAM30.Rd
  PAM30 Matrix for 20 Amino Acids

Files: data/AAPAM40.rda
Documented: man/AAPAM40.Rd
  PAM40 Matrix for 20 Amino Acids

Files: data/AAPAM70.rda
Documented: man/AAPAM70.Rd
  PAM70 Matrix for 20 Amino Acids

Files: data/AARandic.rda
Documented: man/AARandic.Rd
  Randic Molecular Profiles Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AARDF.rda
Documented: man/AARDF.Rd
  RDF Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AATopoChg.rda
Documented: man/AATopoChg.Rd
  Topological Charge Indices Descriptors for 20 Amino Acids

Files: data/AATopo.rda
Documented: man/AATopo.Rd
  Topological Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AAWalk.rda
Documented: man/AAWalk.Rd
  Walk and Path Counts Descriptors for 20 Amino Acids calculated by Dragon

Files: data/AAWHIM.rda
Documented: man/AAWHIM.Rd
  WHIM Descriptors for 20 Amino Acids calculated by Dragon

Files: inst/sysdata/CTDict.rda
FIXME: Needs documentation

Files: inst/sysdata/CTIndex.rda
FIXME: Needs documentation

Files: inst/sysdata/TCDict.rda
FIXME: Needs documentation

 -- Andreas Tille <tille@debian.org>  Mon, 23 Mar 2020 21:27:37 +0100
control file for r-bioc-rcpi_1.28.0+ds-1_all.deb (click to toggle)
Package:r-bioc-rcpi
Version:1.28.0+ds-1
Architecture:all
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size:2487
Depends:r-base-core (>=4.1.1-2), r-api-4.0, r-api-bioc-3.13, r-cran-rcurl, r-cran-rjson, r-cran-foreach, r-cran-doparallel, r-bioc-biostrings, r-bioc-gosemsim, r-bioc-chemminer, r-bioc-fmcsr, r-cran-rcdk (>=3.3.8)
Recommends:r-cran-runit
Suggests:r-cran-knitr, r-cran-rmarkdown, r-bioc-biocgenerics
Section:gnu-r
Priority:optional
Homepage:https://bioconductor.org/packages/Rcpi/
Description:
molecular informatics toolkit for compound-protein interaction
 Rcpi offers a molecular informatics toolkit with a
 comprehensive integration of bioinformatics and
 chemoinformatics tools for drug discovery.
lintian 2.94.0~bpo10+1 check for r-bioc-rcpi_1.28.0+ds-1_all.deb (click to toggle)
contents of r-bioc-rcpi_1.28.0+ds-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2021-10-01 23:09 ./
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/lib/
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/lib/R/
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/lib/R/site-library/
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/
-rw-r--r-- root/root       633 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/CITATION
-rw-r--r-- root/root      1519 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/DESCRIPTION
-rw-r--r-- root/root     18544 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/INDEX
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/Meta/
-rw-r--r-- root/root      7215 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/Meta/Rd.rds
-rw-r--r-- root/root       706 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/Meta/data.rds
-rw-r--r-- root/root       123 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/Meta/features.rds
-rw-r--r-- root/root      6519 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/Meta/hsearch.rds
-rw-r--r-- root/root      2204 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/Meta/links.rds
-rw-r--r-- root/root      1436 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/Meta/nsInfo.rds
-rw-r--r-- root/root      1402 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/Meta/package.rds
-rw-r--r-- root/root       288 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/Meta/vignette.rds
-rw-r--r-- root/root      4235 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/NAMESPACE
-rw-r--r-- root/root      2693 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/NEWS
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/R/
-rw-r--r-- root/root      1058 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/R/Rcpi
-rw-r--r-- root/root    176719 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/R/Rcpi.rdb
-rw-r--r-- root/root      2161 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/R/Rcpi.rdx
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/compseq/
-rw-r--r-- root/root      3818 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/compseq/DB00530.sdf
-rw-r--r-- root/root      2118 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/compseq/DB00859.sdf
-rw-r--r-- root/root      5496 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/compseq/DB00860.sdf
-rw-r--r-- root/root    517450 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/compseq/tyrphostin.sdf
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/data/
-rw-r--r-- root/root    230602 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/data/Rdata.rdb
-rw-r--r-- root/root       381 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/data/Rdata.rds
-rw-r--r-- root/root       604 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/data/Rdata.rdx
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/doc/
-rw-r--r-- root/root     19219 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/doc/Rcpi-quickref.Rmd
-rw-r--r-- root/root     18540 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/doc/Rcpi.R
-rw-r--r-- root/root     37761 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/doc/Rcpi.Rmd
-rw-r--r-- root/root      1912 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/doc/index.html
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/help/
-rw-r--r-- root/root      5784 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/help/AnIndex
-rw-r--r-- root/root    372353 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/help/Rcpi.rdb
-rw-r--r-- root/root      3679 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/help/Rcpi.rdx
-rw-r--r-- root/root      1351 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/help/aliases.rds
-rw-r--r-- root/root      1445 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/help/paths.rds
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/html/
-rw-r--r-- root/root     29033 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/html/00Index.html
-rw-r--r-- root/root      1335 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/html/R.css
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/protseq/
-rw-r--r-- root/root    478224 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/protseq/4HHB.pdb
-rw-r--r-- root/root       661 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/protseq/P00750.fasta
-rw-r--r-- root/root       377 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/protseq/P08218.fasta
-rw-r--r-- root/root       492 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/protseq/P10323.fasta
-rw-r--r-- root/root       323 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/protseq/P20160.fasta
-rw-r--r-- root/root     34559 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/protseq/Plasminogen.fasta
-rw-r--r-- root/root       593 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/protseq/Q9NZP8.fasta
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/sysdata/
-rw-r--r-- root/root     60680 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/sysdata/AAidx.csv
-rw-r--r-- root/root     12219 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/sysdata/CTDict.rda
-rw-r--r-- root/root       916 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/sysdata/CTIndex.rda
-rw-r--r-- root/root      1460 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/sysdata/Grantham.csv
-rw-r--r-- root/root     37516 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/sysdata/OptAA3d.sdf
-rw-r--r-- root/root      2315 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/sysdata/Schneider-Wrede.csv
-rw-r--r-- root/root      9785 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/sysdata/TCDict.rda
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/unitTests/
-rw-r--r-- root/root       240 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/unitTests/test_acc.R
-rw-r--r-- root/root       131 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/unitTests/test_checkProt.R
-rw-r--r-- root/root       452 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/unitTests/test_extractDrugALOGP.R
-rw-r--r-- root/root       444 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/unitTests/test_extractDrugECI.R
-rw-r--r-- root/root       455 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/unitTests/test_extractDrugRuleOfFive.R
-rw-r--r-- root/root       448 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/unitTests/test_extractDrugTPSA.R
-rw-r--r-- root/root       449 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/unitTests/test_extractDrugXLogP.R
-rw-r--r-- root/root      1072 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/unitTests/test_extractPCMBLOSUM.R
-rw-r--r-- root/root       813 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/unitTests/test_extractProtAAC.R
-rw-r--r-- root/root       348 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/unitTests/test_getCPI.R
-rw-r--r-- root/root       585 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/unitTests/test_getPPI.R
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/vignettedata/
-rw-r--r-- root/root      1592 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/vignettedata/FDAMDD.csv
-rw-r--r-- root/root     41645 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/vignettedata/FDAMDD.smi
-rw-r--r-- root/root     20064 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/vignettedata/GPCR.csv
-rw-r--r-- root/root     16053 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/vignettedata/RI.csv
-rw-r--r-- root/root      6495 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/vignettedata/RI.smi
-rw-r--r-- root/root    143241 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/vignettedata/extracell.fasta
-rw-r--r-- root/root    118398 2021-10-01 23:09 ./usr/lib/R/site-library/Rcpi/vignettedata/mitochondrion.fasta
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/share/
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-10-01 23:09 ./usr/share/doc/r-bioc-rcpi/
-rw-r--r-- root/root       252 2021-10-01 23:09 ./usr/share/doc/r-bioc-rcpi/changelog.Debian.gz
-rw-r--r-- root/root      9784 2021-10-01 23:08 ./usr/share/doc/r-bioc-rcpi/copyright
-rw-r--r-- root/root       402 2021-10-01 23:02 ./usr/share/doc/r-bioc-rcpi/run-unit-test
drwxr-xr-x root/root         0 2021-10-01 23:02 ./usr/share/doc/r-bioc-rcpi/tests/
-rw-r--r-- root/root        35 2021-10-01 23:02 ./usr/share/doc/r-bioc-rcpi/tests/runTests.R

Timestamp: 02.10.2021 / 00:01:03 (UTC)