corner image corner image corner image corner image Debian NEW package overview for r-bioc-nanostringqcpro
r-bioc-nanostringqcpro_1.18.0-1_amd64.changes (click to toggle)
Format:1.8
Date:Tue, 14 Jan 2020 13:37:29 +0100
Source:r-bioc-nanostringqcpro
Binary:r-bioc-nanostringqcpro
Architecture:source all
Version:1.18.0-1
Distribution:unstable
Urgency:medium
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
r-bioc-nanostringqcpro - processing and QA for NanoString mRNA expression data
Closes:948881
Changes:
r-bioc-nanostringqcpro (1.18.0-1) unstable; urgency=medium

  * Initial release (closes: #948881)
Files:
8817c171f2390d3821e9824fbeae4a41 2268 gnu-r optional r-bioc-nanostringqcpro_1.18.0-1.dsc
37d749988c90afcbf718659d9e5e389a 252935 gnu-r optional r-bioc-nanostringqcpro_1.18.0.orig.tar.gz
d05110c3eea8fc09e617228a61fc208e 4896 gnu-r optional r-bioc-nanostringqcpro_1.18.0-1.debian.tar.xz
e518f8b772b9a2fd069fd0c7fcb98041 464016 gnu-r optional r-bioc-nanostringqcpro_1.18.0-1_all.deb
f55ddbbed0d3e0c556e197f12febccd3 11270 gnu-r optional r-bioc-nanostringqcpro_1.18.0-1_amd64.buildinfo
r-bioc-nanostringqcpro_1.18.0-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:r-bioc-nanostringqcpro
Binary:r-bioc-nanostringqcpro
Architecture:all
Version:1.18.0-1
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders:Steffen Moeller <moeller@debian.org>
Homepage:https://bioconductor.org/packages/NanoStringQCPro/
Standards-Version:4.4.1
Vcs-Browser:https://salsa.debian.org/r-pkg-team/r-bioc-nanostringqcpro
Vcs-Git:https://salsa.debian.org/r-pkg-team/r-bioc-nanostringqcpro.git
Testsuite:autopkgtest-pkg-r
Build-Depends:debhelper-compat (=12), dh-r, r-base-dev, r-bioc-annotationdbi, r-bioc-biobase, r-cran-nmf, r-cran-rcolorbrewer, r-cran-png, r-bioc-org.hs.eg.db
Package-List:r-bioc-nanostringqcpro deb gnu-r optional arch=all
Files:
37d749988c90afcbf718659d9e5e389a 252935 r-bioc-nanostringqcpro_1.18.0.orig.tar.gz
d05110c3eea8fc09e617228a61fc208e 4896 r-bioc-nanostringqcpro_1.18.0-1.debian.tar.xz
lintian 2.43.0~bpo9+1 check for r-bioc-nanostringqcpro_1.18.0-1.dsc (click to toggle)
README.source for r-bioc-nanostringqcpro_1.18.0-1.dsc (click to toggle)
Explanation for binary files inside source package according to
  https://lists.debian.org/debian-devel/2013/09/msg00332.html

Files: data/example_rccSet.rdata
Documented: man/example_rccSet.Rd
  NanoStringQCPro example dataset

 -- Steffen Moeller <moeller@debian.org>  Tue, 14 Jan 2020 13:37:31 +0100
control file for r-bioc-nanostringqcpro_1.18.0-1_all.deb (click to toggle)
Package:r-bioc-nanostringqcpro
Version:1.18.0-1
Architecture:all
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size:709
Depends:r-base-core (>=3.6.2-2), r-api-3.5, r-api-bioc-3.10, r-bioc-annotationdbi (>=1.26.0), r-bioc-biobase (>=2.24.0), r-cran-knitr (>=1.12), r-cran-nmf (>=0.20.5), r-cran-rcolorbrewer (>=1.0-5), r-cran-png (>=0.1-7)
Suggests:r-cran-roxygen2 (>= 4.0.1), r-cran-testthat, r-cran-rmarkdown
Section:gnu-r
Priority:optional
Homepage:https://bioconductor.org/packages/NanoStringQCPro/
Description:
processing and QA for NanoString mRNA expression data
 NanoStringQCPro provides a set of quality metrics that can
 be used to assess the quality of NanoString mRNA gene
 expression data -- i.e. to identify outlier probes and outlier
 samples. It also provides different background subtraction and
 normalization approaches for this data. It outputs suggestions
 for flagging samples/probes and an easily sharable html quality
 control output.
lintian 2.43.0~bpo9+1 check for r-bioc-nanostringqcpro_1.18.0-1_all.deb (click to toggle)
E: r-bioc-nanostringqcpro: privacy-breach-uses-embedded-file usr/lib/R/site-library/NanoStringQCPro/misc/qcReportHeader.html You may use the libjs-jquery package. (http://code.jquery.com/jquery-2.1.3.min.js)
W: r-bioc-nanostringqcpro: privacy-breach-generic usr/lib/R/site-library/NanoStringQCPro/misc/qcReportHeader.html [<link rel="stylesheet" type="text/css" href="http://cdn.datatables.net/1.10.5/css/jquery.datatables.min.css">] (http://cdn.datatables.net/1.10.5/css/jquery.datatables.min.css)
W: r-bioc-nanostringqcpro: privacy-breach-generic usr/lib/R/site-library/NanoStringQCPro/misc/qcReportHeader.html [<script type="text/javascript" language="javascript" src="http://cdn.datatables.net/1.10.5/js/jquery.datatables.min.js">] (http://cdn.datatables.net/1.10.5/js/jquery.datatables.min.js)
contents of r-bioc-nanostringqcpro_1.18.0-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2020-01-14 12:37 ./
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/site-library/
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/
-rw-r--r-- root/root      1609 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/DESCRIPTION
-rw-r--r-- root/root      4176 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/INDEX
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/Meta/
-rw-r--r-- root/root      2221 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/Meta/Rd.rds
-rw-r--r-- root/root       119 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/Meta/data.rds
-rw-r--r-- root/root       132 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/Meta/features.rds
-rw-r--r-- root/root      2178 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/Meta/hsearch.rds
-rw-r--r-- root/root      1380 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/Meta/links.rds
-rw-r--r-- root/root       439 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/Meta/nsInfo.rds
-rw-r--r-- root/root      1422 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/Meta/package.rds
-rw-r--r-- root/root       705 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/NAMESPACE
-rw-r--r-- root/root       424 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/NEWS
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/R/
-rw-r--r-- root/root      1056 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/R/NanoStringQCPro
-rw-r--r-- root/root    254093 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/R/NanoStringQCPro.rdb
-rw-r--r-- root/root      2825 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/R/NanoStringQCPro.rdx
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/data/
-rw-r--r-- root/root      7111 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/data/Rdata.rdb
-rw-r--r-- root/root        88 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/data/Rdata.rds
-rw-r--r-- root/root       166 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/data/Rdata.rdx
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/doc/
-rw-r--r-- root/root    167334 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/doc/vignetteNanoStringQCPro.pdf
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/examples/
-rw-r--r-- root/root      1168 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/examples/main.R
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/CDR/
-rw-r--r-- root/root      3494 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/CDR/CDR-DesignData.csv
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/
-rw-r--r-- root/root      1482 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C1-unstim_C1-unstim_01.RCC
-rw-r--r-- root/root      1481 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C1-unstim_C1-unstim_03.RCC
-rw-r--r-- root/root      1443 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C1-unstim_C1-unstim_04.RCC
-rw-r--r-- root/root      1473 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C1-unstim_C1-unstim_05.RCC
-rw-r--r-- root/root      1438 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C1-unstim_C1-unstim_08.RCC
-rw-r--r-- root/root      1481 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C1-unstim_C1-unstim_12.RCC
-rw-r--r-- root/root      1477 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C2-unstim_C2-unstim_02.RCC
-rw-r--r-- root/root      1475 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C2-unstim_C2-unstim_04.RCC
-rw-r--r-- root/root      1446 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C2-unstim_C2-unstim_06.RCC
-rw-r--r-- root/root      1483 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C2-unstim_C2-unstim_10.RCC
-rw-r--r-- root/root      1484 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C2-unstim_C2-unstim_10_2.RCC
-rw-r--r-- root/root      1477 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C2-unstim_C2-unstim_11.RCC
-rw-r--r-- root/root      1480 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C2-unstim_C2-unstim_12.RCC
-rw-r--r-- root/root      1476 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C3-stim_C3-stim_01.RCC
-rw-r--r-- root/root      1482 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C3-stim_C3-stim_02.RCC
-rw-r--r-- root/root      1480 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C3-stim_C3-stim_04.RCC
-rw-r--r-- root/root      1441 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C3-stim_C3-stim_07.RCC
-rw-r--r-- root/root      1440 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C3-stim_C3-stim_09.RCC
-rw-r--r-- root/root      1483 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C3-stim_C3-stim_11.RCC
-rw-r--r-- root/root      1440 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C4-stim_C4-stim_03.RCC
-rw-r--r-- root/root      1481 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C4-stim_C4-stim_04.RCC
-rw-r--r-- root/root      1478 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C4-stim_C4-stim_06.RCC
-rw-r--r-- root/root      1482 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C4-stim_C4-stim_07.RCC
-rw-r--r-- root/root      1483 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C4-stim_C4-stim_10.RCC
-rw-r--r-- root/root      1481 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RCC/20140604_C4-stim_C4-stim_12.RCC
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RLF/
-rw-r--r-- root/root      6877 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/RLF/NQCP_example.rlf
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/extraPdata/
-rw-r--r-- root/root      1025 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/extraPdata/SampleType.txt
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/nSolver/
-rw-r--r-- root/root      6650 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/extdata/nSolver/RCC_collector_tool_export.csv
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/help/
-rw-r--r-- root/root      3450 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/help/AnIndex
-rw-r--r-- root/root    108661 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/help/NanoStringQCPro.rdb
-rw-r--r-- root/root      1625 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/help/NanoStringQCPro.rdx
-rw-r--r-- root/root      1071 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/help/aliases.rds
-rw-r--r-- root/root       810 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/help/paths.rds
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/html/
-rw-r--r-- root/root     14712 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/html/00Index.html
-rw-r--r-- root/root      1335 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/html/R.css
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/misc/
-rw-r--r-- root/root      1140 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/misc/qcReportHeader.html
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/templates/
-rw-r--r-- root/root     16914 2020-01-14 12:37 ./usr/lib/R/site-library/NanoStringQCPro/templates/QualityControlReportTemplate.Rmd
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/share/
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-01-14 12:37 ./usr/share/doc/r-bioc-nanostringqcpro/
-rw-r--r-- root/root       167 2020-01-14 12:37 ./usr/share/doc/r-bioc-nanostringqcpro/changelog.Debian.gz
-rw-r--r-- root/root      9837 2020-01-14 12:37 ./usr/share/doc/r-bioc-nanostringqcpro/copyright

Timestamp: 14.01.2020 / 19:01:23 (UTC)