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r-bioc-mofa_1.2.0+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Wed, 05 Feb 2020 22:52:53 +0100
Source:r-bioc-mofa
Binary:python3-mofapy r-bioc-mofa
Architecture:source all
Version:1.2.0+dfsg-1
Distribution:unstable
Urgency:medium
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
python3-mofapy - Multi-Omics Factor Analysis (MOFA) - Python module
r-bioc-mofa - Multi-Omics Factor Analysis (MOFA)
Closes:940513
Changes:
r-bioc-mofa (1.2.0+dfsg-1) unstable; urgency=medium

  * Initial release (closes: #940513)
    Reupload, thanks got go FTPmaster Thorsten for his scrutiny.
    And yet another upload - dh-r not detecting the L in LGPL?
Files:
ed06d195d5268f4f28cdf051e72c3acf 2543 gnu-r optional r-bioc-mofa_1.2.0+dfsg-1.dsc
5a9cdfc6d66fb3158238271458fc665b 914644 gnu-r optional r-bioc-mofa_1.2.0+dfsg.orig.tar.xz
c12c98493cbf7f74db8a1736e57c882a 2976 gnu-r optional r-bioc-mofa_1.2.0+dfsg-1.debian.tar.xz
4cb948c54929add5ea43eb014a584eb8 33756 gnu-r optional python3-mofapy_1.2.0+dfsg-1_all.deb
f1d4174b81cbf95b9f83c5cfa3753e71 488560 gnu-r optional r-bioc-mofa_1.2.0+dfsg-1_all.deb
cb066f6b2b8ca21b8f59f0b73963df9e 15384 gnu-r optional r-bioc-mofa_1.2.0+dfsg-1_amd64.buildinfo
r-bioc-mofa_1.2.0+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:r-bioc-mofa
Binary:r-bioc-mofa, python3-mofapy
Architecture:all
Version:1.2.0+dfsg-1
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders:Steffen Moeller <moeller@debian.org>
Homepage:https://bioconductor.org/packages/MOFA/
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/r-pkg-team/r-bioc-mofa
Vcs-Git:https://salsa.debian.org/r-pkg-team/r-bioc-mofa.git
Testsuite:autopkgtest-pkg-r
Build-Depends:debhelper-compat (=12), dh-r, r-base-dev, xvfb, r-bioc-rhdf5, r-cran-dplyr, r-cran-reshape2, r-cran-pheatmap, r-cran-corrplot, r-cran-ggplot2, r-cran-ggbeeswarm, r-cran-scales, r-cran-ggally, r-cran-rcolorbrewer, r-cran-cowplot, r-cran-ggrepel, r-bioc-biobase, r-cran-doparallel, r-cran-foreach, r-cran-reticulate, r-bioc-multiassayexperiment, python3-all, dh-python, python3-pandas, python3-setuptools, python3-scipy, python3-numpy, python3-sklearn, python3-h5py
Package-List:python3-mofapy deb gnu-r optional arch=all r-bioc-mofa deb gnu-r optional arch=all
Files:
5a9cdfc6d66fb3158238271458fc665b 914644 r-bioc-mofa_1.2.0+dfsg.orig.tar.xz
c12c98493cbf7f74db8a1736e57c882a 2976 r-bioc-mofa_1.2.0+dfsg-1.debian.tar.xz
lintian 2.47.0~bpo9+1 check for r-bioc-mofa_1.2.0+dfsg-1.dsc (click to toggle)
README.source for r-bioc-mofa_1.2.0+dfsg-1.dsc (click to toggle)
Changes to source tree for MOFA
===============================

The following files have been removed from the archive:
	build/vignette.rds
		It is removed upon clean and looks better not to be
		redistributed in the first place
	inst/doc/*html
		These HTML pages have embedded JavaScript that
		should be substitute to shared version of that
		resective library in /usr or refer to online
		resources like a CDN.
control file for python3-mofapy_1.2.0+dfsg-1_all.deb (click to toggle)
Package:python3-mofapy
Source:r-bioc-mofa
Version:1.2.0+dfsg-1
Architecture:all
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size:175
Depends:python3 (>=3.2), python3-h5py, python3-numpy, python3-pandas, python3-scipy, python3:any
Recommends:python3-sklearn, python3-sklearn-pandas
Suggests:r-bioc-mofa
Section:gnu-r
Priority:optional
Homepage:https://bioconductor.org/packages/MOFA/
Description:
Multi-Omics Factor Analysis (MOFA) - Python module
 Multi-Omics Factor Analysis: an unsupervised framework for the
 integration of multi-omics data sets.
 .
 This package is required by the R package to function.
lintian 2.47.0~bpo9+1 check for python3-mofapy_1.2.0+dfsg-1_all.deb (click to toggle)
contents of python3-mofapy_1.2.0+dfsg-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2020-02-05 21:52 ./
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/lib/
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/lib/python3/
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/lib/python3/dist-packages/mofapy/
-rw-r--r-- root/root         0 2019-09-16 14:39 ./usr/lib/python3/dist-packages/mofapy/__init__.py
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/lib/python3/dist-packages/mofapy/core/
-rw-r--r-- root/root     10227 2019-09-16 14:39 ./usr/lib/python3/dist-packages/mofapy/core/BayesNet.py
-rw-r--r-- root/root         0 2019-09-16 14:39 ./usr/lib/python3/dist-packages/mofapy/core/__init__.py
-rw-r--r-- root/root      5309 2019-09-16 14:39 ./usr/lib/python3/dist-packages/mofapy/core/build_model.py
-rw-r--r-- root/root     21045 2019-09-16 14:39 ./usr/lib/python3/dist-packages/mofapy/core/distributions.py
-rw-r--r-- root/root     16738 2019-09-16 14:39 ./usr/lib/python3/dist-packages/mofapy/core/entry_point.py
-rw-r--r-- root/root     12125 2019-09-16 14:39 ./usr/lib/python3/dist-packages/mofapy/core/init_nodes.py
-rw-r--r-- root/root      3105 2019-09-16 14:39 ./usr/lib/python3/dist-packages/mofapy/core/mixed_nodes.py
-rw-r--r-- root/root      6336 2019-09-16 14:39 ./usr/lib/python3/dist-packages/mofapy/core/multiview_nodes.py
-rw-r--r-- root/root      3552 2019-09-16 14:39 ./usr/lib/python3/dist-packages/mofapy/core/nodes.py
-rw-r--r-- root/root     16020 2019-09-16 14:39 ./usr/lib/python3/dist-packages/mofapy/core/nongaussian_nodes.py
-rw-r--r-- root/root      7304 2019-09-16 14:39 ./usr/lib/python3/dist-packages/mofapy/core/simulate.py
-rw-r--r-- root/root     18603 2019-09-16 14:39 ./usr/lib/python3/dist-packages/mofapy/core/updates.py
-rw-r--r-- root/root     16038 2019-09-16 14:39 ./usr/lib/python3/dist-packages/mofapy/core/utils.py
-rw-r--r-- root/root      9210 2019-09-16 14:39 ./usr/lib/python3/dist-packages/mofapy/core/variational_nodes.py
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/lib/python3/dist-packages/mofapy/run/
-rw-r--r-- root/root         0 2019-09-16 14:39 ./usr/lib/python3/dist-packages/mofapy/run/__init__.py
-rw-r--r-- root/root      4004 2019-09-16 14:39 ./usr/lib/python3/dist-packages/mofapy/run/python_template.py
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/lib/python3/dist-packages/mofapy-1.2.egg-info/
-rw-r--r-- root/root       348 2020-02-05 21:52 ./usr/lib/python3/dist-packages/mofapy-1.2.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2020-02-05 21:52 ./usr/lib/python3/dist-packages/mofapy-1.2.egg-info/dependency_links.txt
-rw-r--r-- root/root         8 2020-02-05 21:52 ./usr/lib/python3/dist-packages/mofapy-1.2.egg-info/requires.txt
-rw-r--r-- root/root         7 2020-02-05 21:52 ./usr/lib/python3/dist-packages/mofapy-1.2.egg-info/top_level.txt
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/share/
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/share/doc/python3-mofapy/
-rw-r--r-- root/root       246 2020-02-05 21:52 ./usr/share/doc/python3-mofapy/changelog.Debian.gz
-rw-r--r-- root/root      1327 2020-02-05 21:48 ./usr/share/doc/python3-mofapy/copyright
control file for r-bioc-mofa_1.2.0+dfsg-1_all.deb (click to toggle)
Package:r-bioc-mofa
Version:1.2.0+dfsg-1
Architecture:all
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size:698
Depends:python3-mofapy
Section:gnu-r
Priority:optional
Homepage:https://bioconductor.org/packages/MOFA/
Description:
Multi-Omics Factor Analysis (MOFA)
 Multi-Omics Factor Analysis: an unsupervised framework for the
 integration of multi-omics data sets.
lintian 2.47.0~bpo9+1 check for r-bioc-mofa_1.2.0+dfsg-1_all.deb (click to toggle)
contents of r-bioc-mofa_1.2.0+dfsg-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2020-02-05 21:52 ./
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/lib/
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/lib/R/
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/lib/R/site-library/
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/
-rw-r--r-- root/root      1198 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/DESCRIPTION
-rw-r--r-- root/root      4296 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/INDEX
-rw-r--r-- root/root      7652 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/LICENSE
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/Meta/
-rw-r--r-- root/root      2356 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/Meta/Rd.rds
-rw-r--r-- root/root       132 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/Meta/features.rds
-rw-r--r-- root/root      2206 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/Meta/hsearch.rds
-rw-r--r-- root/root      1293 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/Meta/links.rds
-rw-r--r-- root/root      1163 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/Meta/nsInfo.rds
-rw-r--r-- root/root      1360 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/Meta/package.rds
-rw-r--r-- root/root       361 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/Meta/vignette.rds
-rw-r--r-- root/root      3655 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/NAMESPACE
-rw-r--r-- root/root        67 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/NEWS
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/R/
-rw-r--r-- root/root      1056 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/R/MOFA
-rw-r--r-- root/root    405821 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/R/MOFA.rdb
-rw-r--r-- root/root      2884 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/R/MOFA.rdx
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/doc/
-rw-r--r-- root/root      2196 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/doc/MOFA.R
-rw-r--r-- root/root     24193 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/doc/MOFA.Rmd
-rw-r--r-- root/root      7599 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/doc/MOFA_example_CLL.R
-rw-r--r-- root/root     18702 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/doc/MOFA_example_CLL.Rmd
-rw-r--r-- root/root      7099 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/doc/MOFA_example_scMT.R
-rw-r--r-- root/root     14955 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/doc/MOFA_example_scMT.Rmd
-rw-r--r-- root/root      1450 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/doc/MOFA_example_simulated.R
-rw-r--r-- root/root      3463 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/doc/MOFA_example_simulated.Rmd
-rw-r--r-- root/root      2621 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/doc/index.html
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/help/
-rw-r--r-- root/root      3645 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/help/AnIndex
-rw-r--r-- root/root    133622 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/help/MOFA.rdb
-rw-r--r-- root/root      1538 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/help/MOFA.rdx
-rw-r--r-- root/root       962 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/help/aliases.rds
-rw-r--r-- root/root       731 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/help/paths.rds
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/html/
-rw-r--r-- root/root     17450 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/html/00Index.html
-rw-r--r-- root/root      1335 2020-02-05 21:52 ./usr/lib/R/site-library/MOFA/html/R.css
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/share/
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-02-05 21:52 ./usr/share/doc/r-bioc-mofa/
-rw-r--r-- root/root       246 2020-02-05 21:52 ./usr/share/doc/r-bioc-mofa/changelog.Debian.gz
-rw-r--r-- root/root      1327 2020-02-05 21:48 ./usr/share/doc/r-bioc-mofa/copyright

Timestamp: 05.02.2020 / 23:01:26 (UTC)