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r-bioc-mofa_1.0.0+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Mon, 16 Sep 2019 14:26:01 +0200
Source:r-bioc-mofa
Binary:python3-mofapy r-bioc-mofa
Architecture:source all
Version:1.0.0+dfsg-1
Distribution:unstable
Urgency:medium
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
python3-mofapy - Multi-Omics Factor Analysis (MOFA) - Python module
r-bioc-mofa - Multi-Omics Factor Analysis (MOFA)
Closes:940513
Changes:
r-bioc-mofa (1.0.0+dfsg-1) unstable; urgency=medium

  * Initial release (closes: #940513)
    Reupload, thanks got go FTPmaster Thorsten for his scrutiny.
Files:
75ec63ee4e0161bd64fd64929f1d106a 2488 gnu-r optional r-bioc-mofa_1.0.0+dfsg-1.dsc
f47b2fe7edaaf0487301bf8329376d78 914268 gnu-r optional r-bioc-mofa_1.0.0+dfsg.orig.tar.xz
e67cde18663edc18a73317c734d8ef2d 2824 gnu-r optional r-bioc-mofa_1.0.0+dfsg-1.debian.tar.xz
9de4468b220d2fe794626b9dae14b1eb 33644 gnu-r optional python3-mofapy_1.0.0+dfsg-1_all.deb
21540addc34a7a9930e0701523f01ec2 486716 gnu-r optional r-bioc-mofa_1.0.0+dfsg-1_all.deb
b7dcc3fec875fd2fc57ebe1cd87eeb02 13163 gnu-r optional r-bioc-mofa_1.0.0+dfsg-1_amd64.buildinfo
r-bioc-mofa_1.0.0+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:r-bioc-mofa
Binary:r-bioc-mofa, python3-mofapy
Architecture:all
Version:1.0.0+dfsg-1
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders:Steffen Moeller <moeller@debian.org>
Homepage:https://bioconductor.org/packages/MOFA/
Standards-Version:4.4.1
Vcs-Browser:https://salsa.debian.org/r-pkg-team/r-bioc-mofa
Vcs-Git:https://salsa.debian.org/r-pkg-team/r-bioc-mofa.git
Testsuite:autopkgtest-pkg-r
Build-Depends:debhelper-compat (=12), dh-r, r-base-dev, r-bioc-rhdf5, r-cran-dplyr, r-cran-reshape2, r-cran-pheatmap, r-cran-corrplot, r-cran-ggplot2, r-cran-ggbeeswarm, r-cran-scales, r-cran-ggally, r-cran-rcolorbrewer, r-cran-cowplot, r-cran-ggrepel, r-bioc-biobase, r-cran-doparallel, r-cran-foreach, r-cran-reticulate, python3-all, dh-python, python3-pandas, python3-scipy, python3-numpy, python3-sklearn, python3-h5py
Package-List:python3-mofapy deb gnu-r optional arch=all r-bioc-mofa deb gnu-r optional arch=all
Files:
f47b2fe7edaaf0487301bf8329376d78 914268 r-bioc-mofa_1.0.0+dfsg.orig.tar.xz
e67cde18663edc18a73317c734d8ef2d 2824 r-bioc-mofa_1.0.0+dfsg-1.debian.tar.xz
lintian 2.25.0~bpo9+2 check for r-bioc-mofa_1.0.0+dfsg-1.dsc (click to toggle)
W: r-bioc-mofa source: timewarp-standards-version (2019-09-16 < 2019-09-29)
README.source for r-bioc-mofa_1.0.0+dfsg-1.dsc (click to toggle)
Changes to source tree for MOFA
===============================

The following files have been removed from the archive:
	build/vignette.rds
		It is removed upon clean and looks better not to be
		redistributed in the first place
	inst/doc/*html
		These HTML pages have embedded JavaScript that
		should be substitute to shared version of that
		resective library in /usr or refer to online
		resources like a CDN.
control file for python3-mofapy_1.0.0+dfsg-1_all.deb (click to toggle)
Package:python3-mofapy
Source:r-bioc-mofa
Version:1.0.0+dfsg-1
Architecture:all
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size:175
Depends:python3 (>=3.2), python3-h5py, python3-numpy, python3-pandas, python3-scipy, python3:any
Recommends:python3-sklearn, python3-sklearn-pandas
Suggests:r-bioc-mofa
Section:gnu-r
Priority:optional
Homepage:https://bioconductor.org/packages/MOFA/
Description:
Multi-Omics Factor Analysis (MOFA) - Python module
 Multi-Omics Factor Analysis: an unsupervised framework for the
 integration of multi-omics data sets.
 .
 This package is required by the R package to function.
lintian 2.25.0~bpo9+2 check for python3-mofapy_1.0.0+dfsg-1_all.deb (click to toggle)
contents of python3-mofapy_1.0.0+dfsg-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2019-09-16 12:26 ./
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/lib/
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/lib/python3/
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/
-rw-r--r-- root/root         0 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/__init__.py
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/core/
-rw-r--r-- root/root     10227 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/core/BayesNet.py
-rw-r--r-- root/root         0 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/core/__init__.py
-rw-r--r-- root/root      5309 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/core/build_model.py
-rw-r--r-- root/root     21045 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/core/distributions.py
-rw-r--r-- root/root     16738 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/core/entry_point.py
-rw-r--r-- root/root     12125 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/core/init_nodes.py
-rw-r--r-- root/root      3105 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/core/mixed_nodes.py
-rw-r--r-- root/root      6336 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/core/multiview_nodes.py
-rw-r--r-- root/root      3552 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/core/nodes.py
-rw-r--r-- root/root     16020 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/core/nongaussian_nodes.py
-rw-r--r-- root/root      7304 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/core/simulate.py
-rw-r--r-- root/root     18603 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/core/updates.py
-rw-r--r-- root/root     16038 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/core/utils.py
-rw-r--r-- root/root      9210 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/core/variational_nodes.py
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/run/
-rw-r--r-- root/root         0 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/run/__init__.py
-rw-r--r-- root/root      4004 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy/run/python_template.py
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy-1.2.egg-info/
-rw-r--r-- root/root       348 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy-1.2.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy-1.2.egg-info/dependency_links.txt
-rw-r--r-- root/root         8 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy-1.2.egg-info/requires.txt
-rw-r--r-- root/root         7 2019-09-16 12:26 ./usr/lib/python3/dist-packages/mofapy-1.2.egg-info/top_level.txt
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/share/
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/share/doc/python3-mofapy/
-rw-r--r-- root/root       209 2019-09-16 12:26 ./usr/share/doc/python3-mofapy/changelog.Debian.gz
-rw-r--r-- root/root      1158 2019-09-16 12:26 ./usr/share/doc/python3-mofapy/copyright
control file for r-bioc-mofa_1.0.0+dfsg-1_all.deb (click to toggle)
Package:r-bioc-mofa
Version:1.0.0+dfsg-1
Architecture:all
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size:697
Depends:python3-mofapy
Section:gnu-r
Priority:optional
Homepage:https://bioconductor.org/packages/MOFA/
Description:
Multi-Omics Factor Analysis (MOFA)
 Multi-Omics Factor Analysis: an unsupervised framework for the
 integration of multi-omics data sets.
lintian 2.25.0~bpo9+2 check for r-bioc-mofa_1.0.0+dfsg-1_all.deb (click to toggle)
contents of r-bioc-mofa_1.0.0+dfsg-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2019-09-16 12:26 ./
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/lib/
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/lib/R/
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/lib/R/site-library/
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/
-rw-r--r-- root/root      1197 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/DESCRIPTION
-rw-r--r-- root/root      4296 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/INDEX
-rw-r--r-- root/root      7652 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/LICENSE
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/Meta/
-rw-r--r-- root/root      2354 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/Meta/Rd.rds
-rw-r--r-- root/root       132 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/Meta/features.rds
-rw-r--r-- root/root      2212 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/Meta/hsearch.rds
-rw-r--r-- root/root      1294 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/Meta/links.rds
-rw-r--r-- root/root      1163 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/Meta/nsInfo.rds
-rw-r--r-- root/root      1356 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/Meta/package.rds
-rw-r--r-- root/root       363 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/Meta/vignette.rds
-rw-r--r-- root/root      3655 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/NAMESPACE
-rw-r--r-- root/root        67 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/NEWS
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/R/
-rw-r--r-- root/root      1056 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/R/MOFA
-rw-r--r-- root/root    404688 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/R/MOFA.rdb
-rw-r--r-- root/root      2876 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/R/MOFA.rdx
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/doc/
-rw-r--r-- root/root      2136 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/doc/MOFA.R
-rw-r--r-- root/root     24193 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/doc/MOFA.Rmd
-rw-r--r-- root/root      7449 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/doc/MOFA_example_CLL.R
-rw-r--r-- root/root     18702 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/doc/MOFA_example_CLL.Rmd
-rw-r--r-- root/root      6974 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/doc/MOFA_example_scMT.R
-rw-r--r-- root/root     14955 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/doc/MOFA_example_scMT.Rmd
-rw-r--r-- root/root      1405 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/doc/MOFA_example_simulated.R
-rw-r--r-- root/root      3466 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/doc/MOFA_example_simulated.Rmd
-rw-r--r-- root/root      2624 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/doc/index.html
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/help/
-rw-r--r-- root/root      3645 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/help/AnIndex
-rw-r--r-- root/root    133618 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/help/MOFA.rdb
-rw-r--r-- root/root      1537 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/help/MOFA.rdx
-rw-r--r-- root/root       963 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/help/aliases.rds
-rw-r--r-- root/root       732 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/help/paths.rds
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/html/
-rw-r--r-- root/root     17450 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/html/00Index.html
-rw-r--r-- root/root      1335 2019-09-16 12:26 ./usr/lib/R/site-library/MOFA/html/R.css
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/share/
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-09-16 12:26 ./usr/share/doc/r-bioc-mofa/
-rw-r--r-- root/root       209 2019-09-16 12:26 ./usr/share/doc/r-bioc-mofa/changelog.Debian.gz
-rw-r--r-- root/root      1158 2019-09-16 12:26 ./usr/share/doc/r-bioc-mofa/copyright

Timestamp: 17.10.2019 / 10:01:35 (UTC)