Debian NEW package overview for r-bioc-mofa2
| r-bioc-mofa2_1.16.0+ds-1_amd64.changes (click to toggle) | |
|---|---|
| Format: | 1.8 |
| Date: | Mon, 13 Jan 2025 15:16:36 +0100 |
| Source: | r-bioc-mofa2 |
| Binary: | r-bioc-mofa2 |
| Architecture: | source amd64 |
| Version: | 1.16.0+ds-1 |
| Distribution: | unstable |
| Urgency: | medium |
| Maintainer: | Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net> |
| Changed-By: | Michael R. Crusoe <crusoe@debian.org> |
| Description: | r-bioc-mofa2 - Multi-Omics Factor Analysis v2 |
| Closes: | 995247 |
| Changes: | r-bioc-mofa2 (1.16.0+ds-1) unstable; urgency=medium * Team Upload [ Steffen Moeller ] * Initial release (closes: #995247) |
| Files: | d5dbdd2a8b7d6cd015a16c0735878917 2352 gnu-r optional r-bioc-mofa2_1.16.0+ds-1.dsc 2ceea96d6afab6b9589733542d07060f 1789764 gnu-r optional r-bioc-mofa2_1.16.0+ds.orig.tar.xz 41a3937a454b665ca602735b9fac6841 2768 gnu-r optional r-bioc-mofa2_1.16.0+ds-1.debian.tar.xz d20dbc9c66c0d5ee7d5430d4a2cc5cfc 15429 gnu-r optional r-bioc-mofa2_1.16.0+ds-1_amd64.buildinfo 622b17eb8dd4264110b4c6a18724d3ae 2469812 gnu-r optional r-bioc-mofa2_1.16.0+ds-1_amd64.deb |
| r-bioc-mofa2_1.16.0+ds-1.dsc (click to toggle) | |
|---|---|
| Format: | 3.0 (quilt) |
| Source: | r-bioc-mofa2 |
| Binary: | r-bioc-mofa2 |
| Architecture: | any |
| Version: | 1.16.0+ds-1 |
| Maintainer: | Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net> |
| Uploaders: | Steffen Moeller <moeller@debian.org> |
| Homepage: | https://bioconductor.org/packages/MOFA2/ |
| Standards-Version: | 4.7.0 |
| Vcs-Browser: | https://salsa.debian.org/r-pkg-team/r-bioc-mofa2 |
| Vcs-Git: | https://salsa.debian.org/r-pkg-team/r-bioc-mofa2.git |
| Testsuite: | autopkgtest-pkg-r |
| Build-Depends: | debhelper-compat (=13), dh-r, r-base-dev, r-bioc-rhdf5, r-cran-dplyr, r-cran-tidyr, r-cran-reshape2, r-cran-pheatmap, r-cran-ggplot2, r-cran-rcolorbrewer, r-cran-cowplot, r-cran-ggrepel, r-cran-reticulate, r-bioc-hdf5array, r-cran-magrittr, r-cran-forcats, r-cran-corrplot, r-bioc-delayedarray, r-cran-rtsne, r-cran-uwot, r-bioc-basilisk, r-cran-stringi |
| Package-List: | r-bioc-mofa2 deb gnu-r optional arch=any |
| Files: | 2ceea96d6afab6b9589733542d07060f 1789764 r-bioc-mofa2_1.16.0+ds.orig.tar.xz 41a3937a454b665ca602735b9fac6841 2768 r-bioc-mofa2_1.16.0+ds-1.debian.tar.xz |
| README.source for r-bioc-mofa2_1.16.0+ds-1.dsc (click to toggle) | |
|---|---|
Explanation for binary files inside source package according to https://lists.debian.org/debian-devel/2013/09/msg00332.html Files: inst/extdata/test_data.RData Documented: man/create_mofa.Rd create a MOFA object -- Steffen Moeller <moeller@debian.org> Tue, 28 Sep 2021 15:43:11 +0200 | |
| control file for r-bioc-mofa2_1.16.0+ds-1_amd64.deb (click to toggle) | |
|---|---|
| Package: | r-bioc-mofa2 |
| Version: | 1.16.0+ds-1 |
| Architecture: | amd64 |
| Maintainer: | Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net> |
| Installed-Size: | 3104 |
| Depends: | r-api-4.0, r-api-bioc-3.20, r-bioc-rhdf5, r-cran-dplyr, r-cran-tidyr, r-cran-reshape2, r-cran-pheatmap, r-cran-ggplot2, r-cran-rcolorbrewer, r-cran-cowplot, r-cran-ggrepel, r-cran-reticulate, r-bioc-hdf5array, r-cran-magrittr, r-cran-forcats, r-cran-corrplot, r-bioc-delayedarray, r-cran-rtsne, r-cran-uwot, r-bioc-basilisk, r-cran-stringi |
| Suggests: | r-cran-knitr, r-cran-testthat, r-cran-seurat, r-cran-seuratobject, r-cran-ggpubr, r-cran-foreach, r-cran-psych, r-bioc-multiassayexperiment, r-bioc-summarizedexperiment, r-bioc-singlecellexperiment, r-cran-ggrastr, r-cran-mvtnorm, r-cran-ggally, r-cran-rmarkdown, r-cran-data.table, r-cran-tidyverse, r-bioc-biocstyle, r-cran-matrix, r-cran-markdown |
| Section: | gnu-r |
| Priority: | optional |
| Homepage: | https://bioconductor.org/packages/MOFA2/ |
| Description: | Multi-Omics Factor Analysis v2 The MOFA2 package contains a collection of tools for training and analysing multi-omic factor analysis (MOFA). MOFA is a probabilistic factor model that aims to identify principal axes of variation from data sets that can comprise multiple omic layers and/or groups of samples. Additional time or space information on the samples can be incorporated using the MEFISTO framework, which is part of MOFA2. Downstream analysis functions to inspect molecular features underlying each factor, vizualisation, imputation etc are available. |
| contents of r-bioc-mofa2_1.16.0+ds-1_amd64.deb (click to toggle) | |
|---|---|
drwxr-xr-x root/root 0 2025-01-13 14:16 ./ drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/ drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/ drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/ drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/ -rw-r--r-- root/root 2819 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/CITATION -rw-r--r-- root/root 2981 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/DESCRIPTION -rw-r--r-- root/root 6775 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/INDEX drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/Meta/ -rw-r--r-- root/root 3088 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/Meta/Rd.rds -rw-r--r-- root/root 132 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/Meta/features.rds -rw-r--r-- root/root 2707 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/Meta/hsearch.rds -rw-r--r-- root/root 1469 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/Meta/links.rds -rw-r--r-- root/root 1546 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/Meta/nsInfo.rds -rw-r--r-- root/root 2187 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/Meta/package.rds -rw-r--r-- root/root 327 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/Meta/vignette.rds -rw-r--r-- root/root 4586 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/NAMESPACE drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/R/ -rw-r--r-- root/root 1058 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/R/MOFA2 -rw-r--r-- root/root 721734 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/R/MOFA2.rdb -rw-r--r-- root/root 3771 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/R/MOFA2.rdx drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/doc/ -rw-r--r-- root/root 3149 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/doc/MEFISTO_temporal.R -rw-r--r-- root/root 7181 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/doc/MEFISTO_temporal.Rmd -rw-r--r-- root/root 5516 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/doc/downstream_analysis.R -rw-r--r-- root/root 9225 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/doc/downstream_analysis.Rmd -rw-r--r-- root/root 2278 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/doc/getting_started_R.R -rw-r--r-- root/root 8169 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/doc/getting_started_R.Rmd -rw-r--r-- root/root 2595 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/doc/index.html drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/extdata/ -rw-r--r-- root/root 299573 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/extdata/MEFISTO_model.hdf5 -rw-r--r-- root/root 1351495 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/extdata/model.hdf5 -rw-r--r-- root/root 451454 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/extdata/test_data.RData drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/help/ -rw-r--r-- root/root 4185 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/help/AnIndex -rw-r--r-- root/root 199007 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/help/MOFA2.rdb -rw-r--r-- root/root 2097 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/help/MOFA2.rdx -rw-r--r-- root/root 1016 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/help/aliases.rds -rw-r--r-- root/root 902 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/help/paths.rds drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/html/ -rw-r--r-- root/root 18131 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/html/00Index.html -rw-r--r-- root/root 1844 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/html/R.css drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/scripts/ -rw-r--r-- root/root 2643 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/scripts/template_script.R -rw-r--r-- root/root 5275 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/scripts/template_script.py -rw-r--r-- root/root 3460 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/scripts/template_script_dataframe.py -rw-r--r-- root/root 4745 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/scripts/template_script_matrix.py drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/share/ drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/share/doc/r-bioc-mofa2/ -rw-r--r-- root/root 196 2025-01-13 14:16 ./usr/share/doc/r-bioc-mofa2/changelog.Debian.gz -rw-r--r-- root/root 1264 2025-01-13 14:16 ./usr/share/doc/r-bioc-mofa2/copyright | |
| copyright of r-bioc-mofa2_1.16.0+ds-1_amd64.deb (click to toggle) | |
|---|---|
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: MOFA2
Upstream-Contact: Britta Velten <britta.velten@gmail.com>
Source: https://bioconductor.org/packages/MOFA2/
Files-Excluded:
inst/doc/MEFISTO_temporal.html
inst/doc/downstream_analysis.html
inst/doc/getting_started_R.html
Files: *
Copyright: 2020-2021 Ricard Argelaguet
Damien Arnol
Danila Bredikhin
Britta Velten
License: GPL-2+
Files: debian/*
Copyright: 2021 Steffen Moeller <moeller@debian.org>
2025 Michael R. Crusoe <crusoe@debian.org>
License: GPL-2+
License: GPL-2+
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
.
On Debian systems you can find the full text of the GNU General Public
License version 2 at /usr/share/common-licenses/GPL-2.
| |
Timestamp: 13.01.2025 / 16:02:37 (UTC)