Debian NEW package overview for r-bioc-mofa2
| r-bioc-mofa2_1.16.0+ds-1_amd64.changes (click to toggle) | |
|---|---|
| Format: | 1.8 |
| Date: | Mon, 13 Jan 2025 15:16:36 +0100 |
| Source: | r-bioc-mofa2 |
| Binary: | r-bioc-mofa2 |
| Architecture: | source amd64 |
| Version: | 1.16.0+ds-1 |
| Distribution: | unstable |
| Urgency: | medium |
| Maintainer: | Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net> |
| Changed-By: | Michael R. Crusoe <crusoe@debian.org> |
| Description: | r-bioc-mofa2 - Multi-Omics Factor Analysis v2 |
| Closes: | 995247 |
| Changes: | r-bioc-mofa2 (1.16.0+ds-1) unstable; urgency=medium * Team Upload [ Steffen Moeller ] * Initial release (closes: #995247) |
| Files: | 610840b7340de2590913931edf2b7660 2352 gnu-r optional r-bioc-mofa2_1.16.0+ds-1.dsc 2ceea96d6afab6b9589733542d07060f 1789764 gnu-r optional r-bioc-mofa2_1.16.0+ds.orig.tar.xz 158d979199c436f462e0e1603422c732 2752 gnu-r optional r-bioc-mofa2_1.16.0+ds-1.debian.tar.xz 8f9269009cf4491ef84629bebbde34db 15455 gnu-r optional r-bioc-mofa2_1.16.0+ds-1_amd64.buildinfo 66e6983b04d09a6645b1c6e9bcf7bbe1 2469884 gnu-r optional r-bioc-mofa2_1.16.0+ds-1_amd64.deb |
| r-bioc-mofa2_1.16.0+ds-1.dsc (click to toggle) | |
|---|---|
| Format: | 3.0 (quilt) |
| Source: | r-bioc-mofa2 |
| Binary: | r-bioc-mofa2 |
| Architecture: | any |
| Version: | 1.16.0+ds-1 |
| Maintainer: | Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net> |
| Uploaders: | Steffen Moeller <moeller@debian.org> |
| Homepage: | https://bioconductor.org/packages/MOFA2/ |
| Standards-Version: | 4.7.0 |
| Vcs-Browser: | https://salsa.debian.org/r-pkg-team/r-bioc-mofa2 |
| Vcs-Git: | https://salsa.debian.org/r-pkg-team/r-bioc-mofa2.git |
| Testsuite: | autopkgtest-pkg-r |
| Build-Depends: | debhelper-compat (=13), dh-r, r-base-dev, r-bioc-rhdf5, r-cran-dplyr, r-cran-tidyr, r-cran-reshape2, r-cran-pheatmap, r-cran-ggplot2, r-cran-rcolorbrewer, r-cran-cowplot, r-cran-ggrepel, r-cran-reticulate, r-bioc-hdf5array, r-cran-magrittr, r-cran-forcats, r-cran-corrplot, r-bioc-delayedarray, r-cran-rtsne, r-cran-uwot, r-bioc-basilisk, r-cran-stringi |
| Package-List: | r-bioc-mofa2 deb gnu-r optional arch=any |
| Files: | 2ceea96d6afab6b9589733542d07060f 1789764 r-bioc-mofa2_1.16.0+ds.orig.tar.xz 158d979199c436f462e0e1603422c732 2752 r-bioc-mofa2_1.16.0+ds-1.debian.tar.xz |
| README.source for r-bioc-mofa2_1.16.0+ds-1.dsc (click to toggle) | |
|---|---|
Explanation for binary files inside source package according to https://lists.debian.org/debian-devel/2013/09/msg00332.html Files: inst/extdata/test_data.RData Documented: man/create_mofa.Rd create a MOFA object -- Steffen Moeller <moeller@debian.org> Tue, 28 Sep 2021 15:43:11 +0200 | |
| control file for r-bioc-mofa2_1.16.0+ds-1_amd64.deb (click to toggle) | |
|---|---|
| Package: | r-bioc-mofa2 |
| Version: | 1.16.0+ds-1 |
| Architecture: | amd64 |
| Maintainer: | Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net> |
| Installed-Size: | 3104 |
| Depends: | r-api-4.0, r-api-bioc-3.20, r-bioc-rhdf5, r-cran-dplyr, r-cran-tidyr, r-cran-reshape2, r-cran-pheatmap, r-cran-ggplot2, r-cran-rcolorbrewer, r-cran-cowplot, r-cran-ggrepel, r-cran-reticulate, r-bioc-hdf5array, r-cran-magrittr, r-cran-forcats, r-cran-corrplot, r-bioc-delayedarray, r-cran-rtsne, r-cran-uwot, r-bioc-basilisk, r-cran-stringi |
| Suggests: | r-cran-knitr, r-cran-testthat, r-cran-seurat, r-cran-seuratobject, r-cran-ggpubr, r-cran-foreach, r-cran-psych, r-bioc-multiassayexperiment, r-bioc-summarizedexperiment, r-bioc-singlecellexperiment, r-cran-ggrastr, r-cran-mvtnorm, r-cran-ggally, r-cran-rmarkdown, r-cran-data.table, r-cran-tidyverse, r-bioc-biocstyle, r-cran-matrix, r-cran-markdown |
| Section: | gnu-r |
| Priority: | optional |
| Homepage: | https://bioconductor.org/packages/MOFA2/ |
| Description: | Multi-Omics Factor Analysis v2 The MOFA2 package contains a collection of tools for training and analysing multi-omic factor analysis (MOFA). MOFA is a probabilistic factor model that aims to identify principal axes of variation from data sets that can comprise multiple omic layers and/or groups of samples. Additional time or space information on the samples can be incorporated using the MEFISTO framework, which is part of MOFA2. Downstream analysis functions to inspect molecular features underlying each factor, vizualisation, imputation etc are available. |
| contents of r-bioc-mofa2_1.16.0+ds-1_amd64.deb (click to toggle) | |
|---|---|
drwxr-xr-x root/root 0 2025-01-13 14:16 ./ drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/ drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/ drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/ drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/ -rw-r--r-- root/root 2819 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/CITATION -rw-r--r-- root/root 2981 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/DESCRIPTION -rw-r--r-- root/root 6775 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/INDEX drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/Meta/ -rw-r--r-- root/root 3088 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/Meta/Rd.rds -rw-r--r-- root/root 132 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/Meta/features.rds -rw-r--r-- root/root 2707 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/Meta/hsearch.rds -rw-r--r-- root/root 1469 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/Meta/links.rds -rw-r--r-- root/root 1546 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/Meta/nsInfo.rds -rw-r--r-- root/root 2187 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/Meta/package.rds -rw-r--r-- root/root 327 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/Meta/vignette.rds -rw-r--r-- root/root 4586 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/NAMESPACE drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/R/ -rw-r--r-- root/root 1058 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/R/MOFA2 -rw-r--r-- root/root 721740 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/R/MOFA2.rdb -rw-r--r-- root/root 3772 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/R/MOFA2.rdx drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/doc/ -rw-r--r-- root/root 3149 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/doc/MEFISTO_temporal.R -rw-r--r-- root/root 7181 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/doc/MEFISTO_temporal.Rmd -rw-r--r-- root/root 5516 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/doc/downstream_analysis.R -rw-r--r-- root/root 9225 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/doc/downstream_analysis.Rmd -rw-r--r-- root/root 2278 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/doc/getting_started_R.R -rw-r--r-- root/root 8169 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/doc/getting_started_R.Rmd -rw-r--r-- root/root 2595 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/doc/index.html drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/extdata/ -rw-r--r-- root/root 299573 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/extdata/MEFISTO_model.hdf5 -rw-r--r-- root/root 1351495 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/extdata/model.hdf5 -rw-r--r-- root/root 451454 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/extdata/test_data.RData drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/help/ -rw-r--r-- root/root 4185 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/help/AnIndex -rw-r--r-- root/root 199007 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/help/MOFA2.rdb -rw-r--r-- root/root 2097 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/help/MOFA2.rdx -rw-r--r-- root/root 1016 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/help/aliases.rds -rw-r--r-- root/root 902 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/help/paths.rds drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/html/ -rw-r--r-- root/root 18131 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/html/00Index.html -rw-r--r-- root/root 1844 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/html/R.css drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/scripts/ -rw-r--r-- root/root 2643 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/scripts/template_script.R -rw-r--r-- root/root 5275 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/scripts/template_script.py -rw-r--r-- root/root 3460 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/scripts/template_script_dataframe.py -rw-r--r-- root/root 4745 2025-01-13 14:16 ./usr/lib/R/site-library/MOFA2/scripts/template_script_matrix.py drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/share/ drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-01-13 14:16 ./usr/share/doc/r-bioc-mofa2/ -rw-r--r-- root/root 196 2025-01-13 14:16 ./usr/share/doc/r-bioc-mofa2/changelog.Debian.gz -rw-r--r-- root/root 1225 2025-01-13 14:16 ./usr/share/doc/r-bioc-mofa2/copyright | |
| copyright of r-bioc-mofa2_1.16.0+ds-1_amd64.deb (click to toggle) | |
|---|---|
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: MOFA2
Upstream-Contact: Britta Velten <britta.velten@gmail.com>
Source: https://bioconductor.org/packages/MOFA2/
Files-Excluded:
inst/doc/MEFISTO_temporal.html
inst/doc/downstream_analysis.html
inst/doc/getting_started_R.html
Files: *
Copyright: 2020-2021 Ricard Argelaguet
Damien Arnol
Danila Bredikhin
Britta Velten
License: LGPL-3
Files: debian/*
Copyright: 2021 Steffen Moeller <moeller@debian.org>
2025 Michael R. Crusoe <crusoe@debian.org>
License: LGPL-3
License: LGPL-3
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as published by
the Free Software Foundation; version 3 of the License.
.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
.
On Debian systems you can find the full text of the GNU General Public
License version 2 at /usr/share/common-licenses/LGPL-3.
| |
Timestamp: 04.02.2025 / 08:12:27 (UTC)