Debian NEW package overview for r-bioc-isoformswitchanalyzer
r-bioc-isoformswitchanalyzer_1.14.0+ds-1_amd64.changes (click to toggle)
Format:1.8
Date:Tue, 28 Sep 2021 16:22:23 +0200
Source:r-bioc-isoformswitchanalyzer
Binary:r-bioc-isoformswitchanalyzer r-bioc-isoformswitchanalyzer-dbgsym
Architecture:source amd64
Version:1.14.0+ds-1
Distribution:unstable
Urgency:medium
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
r-bioc-isoformswitchanalyzer - Identify, Annotate and Visualize Alternative Splicing and
Closes:995255
Changes:
r-bioc-isoformswitchanalyzer (1.14.0+ds-1) unstable; urgency=medium

  * Initial release (closes: #995255)
Files:
18f19003560b53ad7e87ee0f766e5e5a 2701 gnu-r optional r-bioc-isoformswitchanalyzer_1.14.0+ds-1.dsc
9012faad1c10a728d3c936a83b5952f4 2722428 gnu-r optional r-bioc-isoformswitchanalyzer_1.14.0+ds.orig.tar.xz
795fab405bf0a9ce9b794cb6cc7f7706 2864 gnu-r optional r-bioc-isoformswitchanalyzer_1.14.0+ds-1.debian.tar.xz
ffeec0d9e6e1983184479dafeb0072ff 3248 debug optional r-bioc-isoformswitchanalyzer-dbgsym_1.14.0+ds-1_amd64.deb
f1250f2f530cd56144b0eb30cced2c0b 15649 gnu-r optional r-bioc-isoformswitchanalyzer_1.14.0+ds-1_amd64.buildinfo
c1db2daf8a3112f97b47afaece9c9853 3668016 gnu-r optional r-bioc-isoformswitchanalyzer_1.14.0+ds-1_amd64.deb
r-bioc-isoformswitchanalyzer_1.14.0+ds-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:r-bioc-isoformswitchanalyzer
Binary:r-bioc-isoformswitchanalyzer
Architecture:any
Version:1.14.0+ds-1
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders:Steffen Moeller <moeller@debian.org>
Homepage:https://bioconductor.org/packages/IsoformSwitchAnalyzeR/
Standards-Version:4.6.0
Vcs-Browser:https://salsa.debian.org/r-pkg-team/r-bioc-isoformswitchanalyzer
Vcs-Git:https://salsa.debian.org/r-pkg-team/r-bioc-isoformswitchanalyzer.git
Testsuite:autopkgtest, autopkgtest-pkg-r
Build-Depends:debhelper-compat (=13), dh-r, r-base-dev, r-bioc-limma, r-bioc-dexseq, r-cran-ggplot2, r-bioc-bsgenome, r-cran-plyr, r-cran-reshape2, r-cran-gridextra, r-bioc-biostrings, r-bioc-iranges, r-bioc-genomicranges, r-cran-rcolorbrewer, r-bioc-rtracklayer, r-cran-venndiagram, r-cran-dbi, r-bioc-genomeinfodb, r-bioc-tximport, r-bioc-edger, r-cran-futile.logger, r-cran-stringr, r-cran-dplyr, r-cran-magrittr, r-cran-readr, r-cran-tibble, r-bioc-xvector, r-bioc-biocgenerics, r-cran-rcurl, r-bioc-biobase
Package-List:r-bioc-isoformswitchanalyzer deb gnu-r optional arch=any
Files:
9012faad1c10a728d3c936a83b5952f4 2722428 r-bioc-isoformswitchanalyzer_1.14.0+ds.orig.tar.xz
795fab405bf0a9ce9b794cb6cc7f7706 2864 r-bioc-isoformswitchanalyzer_1.14.0+ds-1.debian.tar.xz
lintian 2.94.0~bpo10+1 check for r-bioc-isoformswitchanalyzer_1.14.0+ds-1.dsc (click to toggle)
README.source for r-bioc-isoformswitchanalyzer_1.14.0+ds-1.dsc (click to toggle)
Explanation for binary files inside source package according to
  https://lists.debian.org/debian-devel/2013/09/msg00332.html

Files: data/exampleSwitchListAnalyzed.RData
Documented: man/analyzeAlternativSplicing.Rd
  Analyse alternative splicing (including intron retention(s))

Files: data/exampleSwitchListIntermediary.RData
Documented: man/addORFfromGTF.Rd
  Add CDS from a GTF file to a switchAnalyzeRlist.

Files: data/exampleSwitchList.RData
Documented: man/analyzeORF.Rd
  Prediction of Transcript Open Reading Frame.

 -- Steffen Moeller <moeller@debian.org>  Tue, 28 Sep 2021 16:22:30 +0200
control file for r-bioc-isoformswitchanalyzer_1.14.0+ds-1_amd64.deb (click to toggle)
Package:r-bioc-isoformswitchanalyzer
Version:1.14.0+ds-1
Architecture:amd64
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size:4197
Depends:r-base-core (>=4.1.1-2), r-api-4.0, r-api-bioc-3.13, r-bioc-limma, r-bioc-dexseq, r-cran-ggplot2, r-bioc-bsgenome, r-cran-plyr, r-cran-reshape2, r-cran-gridextra, r-bioc-biostrings (>=2.50.0), r-bioc-iranges, r-bioc-genomicranges, r-cran-rcolorbrewer, r-bioc-rtracklayer, r-cran-venndiagram, r-cran-dbi, r-bioc-genomeinfodb, r-bioc-tximport (>=1.7.1), r-bioc-tximeta (>=1.7.12), r-bioc-edger, r-cran-futile.logger, r-cran-stringr, r-cran-dplyr, r-cran-magrittr, r-cran-readr, r-cran-tibble, r-bioc-xvector, r-bioc-biocgenerics, r-cran-rcurl, r-bioc-biobase
Suggests:r-cran-knitr, r-cran-rmarkdown
Section:gnu-r
Priority:optional
Homepage:https://bioconductor.org/packages/IsoformSwitchAnalyzeR/
Description:
Identify, Annotate and Visualize Alternative Splicing and
 Isoform Switches with Functional Consequences from both short- and
 long-read RNA-seq data. Analysis of alternative splicing and
 isoform switches with predicted functional consequences (e.g.
 gain/loss of protein domains etc.) from quantification of all
 types of RNASeq by tools such as Kallisto, Salmon, StringTie,
 Cufflinks/Cuffdiff etc.
lintian 2.94.0~bpo10+1 check for r-bioc-isoformswitchanalyzer_1.14.0+ds-1_amd64.deb (click to toggle)
contents of r-bioc-isoformswitchanalyzer_1.14.0+ds-1_amd64.deb (click to toggle)
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drwxr-xr-x root/root         0 2021-09-28 14:22 ./usr/lib/R/
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drwxr-xr-x root/root         0 2021-09-28 14:22 ./usr/share/doc/
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control file for r-bioc-isoformswitchanalyzer-dbgsym_1.14.0+ds-1_amd64.deb (click to toggle)
Package:r-bioc-isoformswitchanalyzer-dbgsym
Source:r-bioc-isoformswitchanalyzer
Version:1.14.0+ds-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size:16
Depends:r-bioc-isoformswitchanalyzer (=1.14.0+ds-1)
Section:debug
Priority:optional
Description:
debug symbols for r-bioc-isoformswitchanalyzer
Build-Ids:5959fb2d130f0fd93a27922d418ff5372e52916a
lintian 2.94.0~bpo10+1 check for r-bioc-isoformswitchanalyzer-dbgsym_1.14.0+ds-1_amd64.deb (click to toggle)
contents of r-bioc-isoformswitchanalyzer-dbgsym_1.14.0+ds-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2021-09-28 14:22 ./
drwxr-xr-x root/root         0 2021-09-28 14:22 ./usr/
drwxr-xr-x root/root         0 2021-09-28 14:22 ./usr/lib/
drwxr-xr-x root/root         0 2021-09-28 14:22 ./usr/lib/debug/
drwxr-xr-x root/root         0 2021-09-28 14:22 ./usr/lib/debug/.build-id/
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drwxr-xr-x root/root         0 2021-09-28 14:22 ./usr/share/
drwxr-xr-x root/root         0 2021-09-28 14:22 ./usr/share/doc/
lrwxrwxrwx root/root         0 2021-09-28 14:22 ./usr/share/doc/r-bioc-isoformswitchanalyzer-dbgsym -> r-bioc-isoformswitchanalyzer

Timestamp: 07.10.2021 / 23:01:04 (UTC)