Debian NEW package overview for r-bioc-ioniser
r-bioc-ioniser_2.14.0+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Wed, 31 Mar 2021 00:42:45 +0530
Source:r-bioc-ioniser
Binary:r-bioc-ioniser
Architecture:source all
Version:2.14.0+dfsg-1
Distribution:unstable
Urgency:medium
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By:Nilesh Patra <nilesh@debian.org>
Description:
r-bioc-ioniser - Quality Assessment Tools for Oxford Nanopore MinION data
Closes:986170
Changes:
r-bioc-ioniser (2.14.0+dfsg-1) unstable; urgency=medium

  * Initial release (closes: #986170)
Files:
5f8ff8a29f3fc25fdf2139d7bac0eebd 2396 gnu-r optional r-bioc-ioniser_2.14.0+dfsg-1.dsc
12b44ae6eff4c74623ed480edbf20cc0 1087504 gnu-r optional r-bioc-ioniser_2.14.0+dfsg.orig.tar.xz
155a7b80184523465a7ff1124c0460dd 3084 gnu-r optional r-bioc-ioniser_2.14.0+dfsg-1.debian.tar.xz
68b2aa8f62ecbd5daeac45c8503e0707 1116488 gnu-r optional r-bioc-ioniser_2.14.0+dfsg-1_all.deb
4f61fad44d3a1f62c9f712eb90aa6f6b 15813 gnu-r optional r-bioc-ioniser_2.14.0+dfsg-1_amd64.buildinfo
r-bioc-ioniser_2.14.0+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:r-bioc-ioniser
Binary:r-bioc-ioniser
Architecture:all
Version:2.14.0+dfsg-1
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders:Nilesh Patra <nilesh@debian.org>
Homepage:https://bioconductor.org/packages/IONiseR/
Standards-Version:4.5.1
Vcs-Browser:https://salsa.debian.org/r-pkg-team/r-bioc-ioniser
Vcs-Git:https://salsa.debian.org/r-pkg-team/r-bioc-ioniser.git
Testsuite:autopkgtest
Testsuite-Triggers:r-cran-testthat
Build-Depends:debhelper-compat (=13), dh-r, r-base-dev, r-bioc-rhdf5, r-cran-dplyr, r-cran-magrittr, r-cran-tidyr, r-bioc-shortread, r-bioc-biostrings, r-cran-ggplot2, r-bioc-biocgenerics, r-bioc-xvector, r-cran-tibble, r-bioc-biocparallel, r-cran-bit64, r-cran-stringr, r-cran-knitr, r-cran-markdown, r-bioc-biocstyle
Package-List:r-bioc-ioniser deb gnu-r optional arch=all
Files:
12b44ae6eff4c74623ed480edbf20cc0 1087504 r-bioc-ioniser_2.14.0+dfsg.orig.tar.xz
155a7b80184523465a7ff1124c0460dd 3084 r-bioc-ioniser_2.14.0+dfsg-1.debian.tar.xz
lintian 2.94.0~bpo10+1 check for r-bioc-ioniser_2.14.0+dfsg-1.dsc (click to toggle)
README.source for r-bioc-ioniser_2.14.0+dfsg-1.dsc (click to toggle)
No README.source in this package
control file for r-bioc-ioniser_2.14.0+dfsg-1_all.deb (click to toggle)
Package:r-bioc-ioniser
Version:2.14.0+dfsg-1
Architecture:all
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size:2079
Depends:r-base-core (>=4.0.4-1), r-api-4.0, r-api-bioc-3.12, r-bioc-rhdf5, r-cran-dplyr, r-cran-magrittr, r-cran-tidyr, r-bioc-shortread, r-bioc-biostrings, r-cran-ggplot2, r-bioc-biocgenerics, r-bioc-xvector, r-cran-tibble, r-bioc-biocparallel, r-cran-bit64, r-cran-stringr
Recommends:r-cran-testthat
Suggests:r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-cran-gridextra
Section:gnu-r
Priority:optional
Homepage:https://bioconductor.org/packages/IONiseR/
Description:
Quality Assessment Tools for Oxford Nanopore MinION data
 IONiseR provides tools for the quality assessment of
 Oxford Nanopore MinION data. It extracts summary statistics
 from a set of fast5 files and can be used either before or
 after base calling.  In addition to standard summaries of the
 read-types produced, it provides a number of plots for
 visualising metrics relative to experiment run time or
 spatially over the surface of a flowcell.
lintian 2.94.0~bpo10+1 check for r-bioc-ioniser_2.14.0+dfsg-1_all.deb (click to toggle)
contents of r-bioc-ioniser_2.14.0+dfsg-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2021-03-30 19:12 ./
drwxr-xr-x root/root         0 2021-03-30 19:12 ./usr/
drwxr-xr-x root/root         0 2021-03-30 19:12 ./usr/lib/
drwxr-xr-x root/root         0 2021-03-30 19:12 ./usr/lib/R/
drwxr-xr-x root/root         0 2021-03-30 19:12 ./usr/lib/R/site-library/
drwxr-xr-x root/root         0 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/
-rw-r--r-- root/root      1709 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/DESCRIPTION
-rw-r--r-- root/root      1893 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/INDEX
drwxr-xr-x root/root         0 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/Meta/
-rw-r--r-- root/root      1248 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/Meta/Rd.rds
-rw-r--r-- root/root       122 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/Meta/features.rds
-rw-r--r-- root/root      1235 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/Meta/hsearch.rds
-rw-r--r-- root/root       599 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/Meta/links.rds
-rw-r--r-- root/root       997 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/Meta/nsInfo.rds
-rw-r--r-- root/root      1526 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/Meta/package.rds
-rw-r--r-- root/root       228 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/Meta/vignette.rds
-rw-r--r-- root/root      2382 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/NAMESPACE
-rw-r--r-- root/root       959 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/NEWS
drwxr-xr-x root/root         0 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/R/
-rw-r--r-- root/root      1058 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/R/IONiseR
-rw-r--r-- root/root    411706 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/R/IONiseR.rdb
-rw-r--r-- root/root      1911 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/R/IONiseR.rdx
drwxr-xr-x root/root         0 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/doc/
-rw-r--r-- root/root      3887 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/doc/IONiseR.R
-rw-r--r-- root/root     16550 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/doc/IONiseR.Rmd
-rw-r--r-- root/root     31873 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/doc/IONiseR.html
-rw-r--r-- root/root      1355 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/doc/index.html
drwxr-xr-x root/root         0 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/extdata/
-rw-r--r-- root/root    628027 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/extdata/example.fast5
-rw-r--r-- root/root     25636 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/extdata/example_not-working.fast5
-rw-r--r-- root/root    899903 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/extdata/example_v2.fast5
drwxr-xr-x root/root         0 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/help/
-rw-r--r-- root/root      1256 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/help/AnIndex
-rw-r--r-- root/root     39739 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/help/IONiseR.rdb
-rw-r--r-- root/root       773 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/help/IONiseR.rdx
-rw-r--r-- root/root       468 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/help/aliases.rds
-rw-r--r-- root/root       423 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/help/paths.rds
drwxr-xr-x root/root         0 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/html/
-rw-r--r-- root/root      6199 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/html/00Index.html
-rw-r--r-- root/root      1335 2021-03-30 19:12 ./usr/lib/R/site-library/IONiseR/html/R.css
drwxr-xr-x root/root         0 2021-03-30 19:12 ./usr/share/
drwxr-xr-x root/root         0 2021-03-30 19:12 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-03-30 19:12 ./usr/share/doc/r-bioc-ioniser/
-rw-r--r-- root/root       164 2021-03-30 19:12 ./usr/share/doc/r-bioc-ioniser/changelog.Debian.gz
-rw-r--r-- root/root      1507 2021-03-30 18:23 ./usr/share/doc/r-bioc-ioniser/copyright
-rw-r--r-- root/root       541 2021-03-30 18:54 ./usr/share/doc/r-bioc-ioniser/run-unit-test
drwxr-xr-x root/root         0 2020-10-27 17:51 ./usr/share/doc/r-bioc-ioniser/tests/
drwxr-xr-x root/root         0 2021-03-30 19:12 ./usr/share/doc/r-bioc-ioniser/tests/testthat/
-rw-r--r-- root/root      1676 2020-10-27 17:51 ./usr/share/doc/r-bioc-ioniser/tests/testthat/test_Fast5Summary.R
-rw-r--r-- root/root       234 2020-10-27 17:51 ./usr/share/doc/r-bioc-ioniser/tests/testthat/test_fastq.R
-rw-r--r-- root/root      1008 2020-10-27 17:51 ./usr/share/doc/r-bioc-ioniser/tests/testthat/test_plotting.R
-rw-r--r-- root/root        58 2020-10-27 17:51 ./usr/share/doc/r-bioc-ioniser/tests/testthat.R

Timestamp: 31.03.2021 / 12:00:56 (UTC)