corner image corner image corner image corner image Debian NEW package overview for r-bioc-geoquery
r-bioc-geoquery_2.54.1+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Sun, 01 Dec 2019 03:15:05 +0100
Source:r-bioc-geoquery
Binary:r-bioc-geoquery
Architecture:source all
Version:2.54.1+dfsg-1
Distribution:unstable
Urgency:medium
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
r-bioc-geoquery - Get data from NCBI Gene Expression Omnibus (GEO)
Closes:945919
Changes:
r-bioc-geoquery (2.54.1+dfsg-1) unstable; urgency=medium

  * Initial release (closes: #945919)
Files:
0b60dca692012426c303f4098fdcd775 2285 gnu-r optional r-bioc-geoquery_2.54.1+dfsg-1.dsc
584fc007962229ca1e70d204c1b8aca1 13458892 gnu-r optional r-bioc-geoquery_2.54.1+dfsg.orig.tar.xz
0731839c93626ac8caa1271e3f3888dd 2260 gnu-r optional r-bioc-geoquery_2.54.1+dfsg-1.debian.tar.xz
05af66eab6d505b4a45f562f6efa0ee8 13589144 gnu-r optional r-bioc-geoquery_2.54.1+dfsg-1_all.deb
f9ac0c226cff3fd580a585580d5d6434 10327 gnu-r optional r-bioc-geoquery_2.54.1+dfsg-1_amd64.buildinfo
r-bioc-geoquery_2.54.1+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:r-bioc-geoquery
Binary:r-bioc-geoquery
Architecture:all
Version:2.54.1+dfsg-1
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders:Steffen Moeller <moeller@debian.org>
Homepage:https://bioconductor.org/packages/GEOquery/
Standards-Version:4.4.1
Vcs-Browser:https://salsa.debian.org/r-pkg-team/r-bioc-geoquery
Vcs-Git:https://salsa.debian.org/r-pkg-team/r-bioc-geoquery.git
Testsuite:autopkgtest, autopkgtest-pkg-r
Testsuite-Triggers:r-cran-testthat
Build-Depends:debhelper-compat (=12), dh-r, r-base-dev, r-bioc-biobase, r-cran-httr, r-cran-readr, r-cran-xml2, r-cran-dplyr, r-cran-tidyr, r-cran-magrittr, r-bioc-limma
Package-List:r-bioc-geoquery deb gnu-r optional arch=all
Files:
584fc007962229ca1e70d204c1b8aca1 13458892 r-bioc-geoquery_2.54.1+dfsg.orig.tar.xz
0731839c93626ac8caa1271e3f3888dd 2260 r-bioc-geoquery_2.54.1+dfsg-1.debian.tar.xz
lintian 2.37.0~bpo9+1 check for r-bioc-geoquery_2.54.1+dfsg-1.dsc (click to toggle)
README.source for r-bioc-geoquery_2.54.1+dfsg-1.dsc (click to toggle)
Not redistributing inst/doc/GEOquery.html because of embedded JavaScript.

 -- Steffen Moeller <moeller@debian.org>
control file for r-bioc-geoquery_2.54.1+dfsg-1_all.deb (click to toggle)
Package:r-bioc-geoquery
Version:2.54.1+dfsg-1
Architecture:all
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size:13374
Depends:r-base-core (>=3.6.1-7), r-api-3.5, r-api-bioc-3.10, r-bioc-biobase, r-cran-httr, r-cran-readr (>=1.3.1), r-cran-xml2, r-cran-dplyr, r-cran-tidyr, r-cran-magrittr, r-bioc-limma
Recommends:r-cran-testthat
Suggests:r-cran-knitr, r-cran-rmarkdown, r-bioc-biocgenerics, r-cran-covr
Section:gnu-r
Priority:optional
Homepage:https://bioconductor.org/packages/GEOquery/
Description:
Get data from NCBI Gene Expression Omnibus (GEO)
 The NCBI Gene Expression Omnibus (GEO) is a public repository of
 microarray data. Given the rich and varied nature of this resource, it
 is only natural to want to apply BioConductor tools to these data.
 GEOquery is the bridge between GEO and BioConductor.
lintian 2.37.0~bpo9+1 check for r-bioc-geoquery_2.54.1+dfsg-1_all.deb (click to toggle)
W: r-bioc-geoquery: gz-file-not-gzip usr/lib/R/site-library/GEOquery/extdata/GPLbroken.soft.gz
contents of r-bioc-geoquery_2.54.1+dfsg-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2019-12-01 02:15 ./
drwxr-xr-x root/root         0 2019-12-01 02:15 ./usr/
drwxr-xr-x root/root         0 2019-12-01 02:15 ./usr/lib/
drwxr-xr-x root/root         0 2019-12-01 02:15 ./usr/lib/R/
drwxr-xr-x root/root         0 2019-12-01 02:15 ./usr/lib/R/site-library/
drwxr-xr-x root/root         0 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/
-rw-r--r-- root/root       528 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/CITATION
-rw-r--r-- root/root      1147 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/DESCRIPTION
-rw-r--r-- root/root       853 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/INDEX
drwxr-xr-x root/root         0 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/Meta/
-rw-r--r-- root/root       927 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/Meta/Rd.rds
-rw-r--r-- root/root       132 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/Meta/features.rds
-rw-r--r-- root/root      1027 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/Meta/hsearch.rds
-rw-r--r-- root/root       512 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/Meta/links.rds
-rw-r--r-- root/root       504 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/Meta/nsInfo.rds
-rw-r--r-- root/root      1158 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/Meta/package.rds
-rw-r--r-- root/root       203 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/Meta/vignette.rds
-rw-r--r-- root/root       870 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/NAMESPACE
-rw-r--r-- root/root      1637 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/NEWS
drwxr-xr-x root/root         0 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/R/
-rw-r--r-- root/root      1056 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/R/GEOquery
-rw-r--r-- root/root    156356 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/R/GEOquery.rdb
-rw-r--r-- root/root      1476 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/R/GEOquery.rdx
drwxr-xr-x root/root         0 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/doc/
-rw-r--r-- root/root      4891 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/doc/GEOquery.R
-rw-r--r-- root/root     15593 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/doc/GEOquery.Rmd
-rw-r--r-- root/root      1338 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/doc/index.html
drwxr-xr-x root/root         0 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/extdata/
-rw-r--r-- root/root   1135299 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/extdata/GDS507.soft.gz
-rw-r--r-- root/root   2008407 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/extdata/GPL97.annot.gz
-rw-r--r-- root/root         0 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/extdata/GPLbroken.soft.gz
-rw-r--r-- root/root  10142112 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/extdata/GSE781_family.soft.gz
-rw-r--r-- root/root    119670 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/extdata/GSM11805.txt.gz
drwxr-xr-x root/root         0 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/help/
-rw-r--r-- root/root      1298 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/help/AnIndex
-rw-r--r-- root/root     29602 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/help/GEOquery.rdb
-rw-r--r-- root/root       502 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/help/GEOquery.rdx
-rw-r--r-- root/root       426 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/help/aliases.rds
-rw-r--r-- root/root       281 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/help/paths.rds
drwxr-xr-x root/root         0 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/html/
-rw-r--r-- root/root      6315 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/html/00Index.html
-rw-r--r-- root/root      1335 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/html/R.css
drwxr-xr-x root/root         0 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/scripts/
-rw-r--r-- root/root       594 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/scripts/buildGEODocsumJson.R
-rw-r--r-- root/root      7899 2019-12-01 02:15 ./usr/lib/R/site-library/GEOquery/scripts/geometa.R
drwxr-xr-x root/root         0 2019-12-01 02:15 ./usr/share/
drwxr-xr-x root/root         0 2019-12-01 02:15 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-12-01 02:15 ./usr/share/doc/r-bioc-geoquery/
-rw-r--r-- root/root       166 2019-12-01 02:15 ./usr/share/doc/r-bioc-geoquery/changelog.Debian.gz
-rw-r--r-- root/root       989 2019-12-01 02:15 ./usr/share/doc/r-bioc-geoquery/copyright
-rw-r--r-- root/root       410 2019-12-01 02:15 ./usr/share/doc/r-bioc-geoquery/run-unit-test
drwxr-xr-x root/root         0 2019-12-01 02:15 ./usr/share/doc/r-bioc-geoquery/tests/
drwxr-xr-x root/root         0 2019-12-01 02:15 ./usr/share/doc/r-bioc-geoquery/tests/testthat/
-rw-r--r-- root/root       676 2019-12-01 02:15 ./usr/share/doc/r-bioc-geoquery/tests/testthat/test_GDS.R
-rw-r--r-- root/root       893 2019-12-01 02:15 ./usr/share/doc/r-bioc-geoquery/tests/testthat/test_GEO_conversions.R
-rw-r--r-- root/root       931 2019-12-01 02:15 ./usr/share/doc/r-bioc-geoquery/tests/testthat/test_GPL.R
-rw-r--r-- root/root      3203 2019-12-01 02:15 ./usr/share/doc/r-bioc-geoquery/tests/testthat/test_GSE.R
-rw-r--r-- root/root       408 2019-12-01 02:15 ./usr/share/doc/r-bioc-geoquery/tests/testthat/test_GSM.R
-rw-r--r-- root/root       503 2019-12-01 02:15 ./usr/share/doc/r-bioc-geoquery/tests/testthat/test_fetch_GPL_false.R
-rw-r--r-- root/root       888 2019-12-01 02:15 ./usr/share/doc/r-bioc-geoquery/tests/testthat/test_supp_files.R
-rw-r--r-- root/root        60 2019-12-01 02:15 ./usr/share/doc/r-bioc-geoquery/tests/testthat.R

Timestamp: 01.12.2019 / 04:01:20 (UTC)