Debian NEW package overview for r-bioc-degnorm
r-bioc-degnorm_1.2.0+ds-1_amd64.changes (click to toggle)
Format:1.8
Date:Tue, 28 Sep 2021 21:46:43 +0200
Source:r-bioc-degnorm
Binary:r-bioc-degnorm r-bioc-degnorm-dbgsym
Architecture:source amd64
Version:1.2.0+ds-1
Distribution:unstable
Urgency:medium
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
r-bioc-degnorm - DegNorm: degradation normalization for RNA-seq data
Closes:992630
Changes:
r-bioc-degnorm (1.2.0+ds-1) unstable; urgency=medium

  * Initial release (closes: #992630)
Files:
9b36bf67f341ca4b3f597491c32f3774 2370 gnu-r optional r-bioc-degnorm_1.2.0+ds-1.dsc
10b665dcd7dc1ff1e3c2e92d5ced8567 1680184 gnu-r optional r-bioc-degnorm_1.2.0+ds.orig.tar.xz
e7137bb1d379001d85cc0f52bcc7aa77 2456 gnu-r optional r-bioc-degnorm_1.2.0+ds-1.debian.tar.xz
f72598db669ff2a6ad9b913606acae8c 925840 debug optional r-bioc-degnorm-dbgsym_1.2.0+ds-1_amd64.deb
376e6bdefc097fb0cf134bcdcd44c094 16657 gnu-r optional r-bioc-degnorm_1.2.0+ds-1_amd64.buildinfo
83206635010a74498af1bca170073988 1514912 gnu-r optional r-bioc-degnorm_1.2.0+ds-1_amd64.deb
r-bioc-degnorm_1.2.0+ds-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:r-bioc-degnorm
Binary:r-bioc-degnorm
Architecture:any
Version:1.2.0+ds-1
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders:Steffen Moeller <moeller@debian.org>
Homepage:https://bioconductor.org/packages/DegNorm/
Standards-Version:4.6.0
Vcs-Browser:https://salsa.debian.org/r-pkg-team/r-bioc-degnorm
Vcs-Git:https://salsa.debian.org/r-pkg-team/r-bioc-degnorm.git
Testsuite:autopkgtest-pkg-r
Build-Depends:debhelper-compat (=13), dh-r, r-base-dev, r-cran-rcpp (>=1.0.2), r-bioc-genomicfeatures, r-cran-foreach, r-bioc-s4vectors, r-cran-doparallel, r-bioc-rsamtools (>=1.31.2), r-bioc-genomicalignments, r-cran-heatmaply, r-cran-data.table, r-cran-ggplot2, r-bioc-genomicranges, r-bioc-iranges, r-cran-plyr, r-cran-plotly, r-cran-viridis, r-cran-rcpparmadillo
Package-List:r-bioc-degnorm deb gnu-r optional arch=any
Files:
10b665dcd7dc1ff1e3c2e92d5ced8567 1680184 r-bioc-degnorm_1.2.0+ds.orig.tar.xz
e7137bb1d379001d85cc0f52bcc7aa77 2456 r-bioc-degnorm_1.2.0+ds-1.debian.tar.xz
lintian 2.94.0~bpo10+1 check for r-bioc-degnorm_1.2.0+ds-1.dsc (click to toggle)
README.source for r-bioc-degnorm_1.2.0+ds-1.dsc (click to toggle)
Explanation for binary files inside source package according to
  https://lists.debian.org/debian-devel/2013/09/msg00332.html

Files: data/coverage_res_chr21.RData
Documented: man/coverage_res_chr21.Rd
  Example CoverageClass data 

Files: data/res_DegNorm_chr21.RData
Documented: man/res_DegNorm_chr21.Rd
  Example DegNormClass data 

 -- Steffen Moeller <moeller@debian.org>  Sat, 21 Aug 2021 15:30:06 +0200
control file for r-bioc-degnorm_1.2.0+ds-1_amd64.deb (click to toggle)
Package:r-bioc-degnorm
Version:1.2.0+ds-1
Architecture:amd64
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size:3120
Depends:r-base-core (>=4.1.1-2), r-api-4.0, r-api-bioc-3.13, r-cran-rcpp (>=1.0.2), r-bioc-genomicfeatures, r-cran-foreach, r-bioc-s4vectors, r-cran-doparallel, r-bioc-rsamtools (>=1.31.2), r-bioc-genomicalignments, r-cran-heatmaply, r-cran-data.table, r-cran-ggplot2, r-bioc-genomicranges, r-bioc-iranges, r-cran-plyr, r-cran-plotly, r-cran-viridis, r-cran-rcpparmadillo, libblas3 | libblas.so.3, libc6 (>=2.29), libgcc-s1 (>=3.0), libgomp1 (>=4.9), libstdc++6 (>=9)
Suggests:r-cran-knitr, r-cran-rmarkdown, r-cran-formatr
Section:gnu-r
Priority:optional
Homepage:https://bioconductor.org/packages/DegNorm/
Description:
DegNorm: degradation normalization for RNA-seq data
 This package performs degradation normalization in bulk RNA-seq data to
 improve differential expression analysis accuracy.
lintian 2.94.0~bpo10+1 check for r-bioc-degnorm_1.2.0+ds-1_amd64.deb (click to toggle)
contents of r-bioc-degnorm_1.2.0+ds-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2021-09-28 19:46 ./
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/lib/
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/lib/R/
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/lib/R/site-library/
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/
-rw-r--r-- root/root      1294 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/DESCRIPTION
-rw-r--r-- root/root       669 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/INDEX
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/Meta/
-rw-r--r-- root/root       662 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/Meta/Rd.rds
-rw-r--r-- root/root       136 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/Meta/data.rds
-rw-r--r-- root/root       123 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/Meta/features.rds
-rw-r--r-- root/root       642 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/Meta/hsearch.rds
-rw-r--r-- root/root       288 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/Meta/links.rds
-rw-r--r-- root/root       910 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/Meta/nsInfo.rds
-rw-r--r-- root/root      1378 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/Meta/package.rds
-rw-r--r-- root/root       191 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/Meta/vignette.rds
-rw-r--r-- root/root      1243 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/NAMESPACE
-rw-r--r-- root/root       630 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/NEWS
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/R/
-rw-r--r-- root/root      1058 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/R/DegNorm
-rw-r--r-- root/root     34015 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/R/DegNorm.rdb
-rw-r--r-- root/root       569 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/R/DegNorm.rdx
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/data/
-rw-r--r-- root/root    394100 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/data/coverage_res_chr21.RData
-rw-r--r-- root/root    347880 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/data/res_DegNorm_chr21.RData
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/doc/
-rw-r--r-- root/root      3400 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/doc/DegNorm.R
-rw-r--r-- root/root      8168 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/doc/DegNorm.Rmd
-rw-r--r-- root/root      1441 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/doc/index.html
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/extdata/
-rw-r--r-- root/root    211184 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/extdata/SRR873822_chr21_9900000-10000000.bam
-rw-r--r-- root/root    176284 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/extdata/SRR873834_chr21_9900000-10000000.bam
-rw-r--r-- root/root    190304 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/extdata/SRR873838_chr21_9900000-10000000.bam
-rw-r--r-- root/root   1567188 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/extdata/genes_chr21.gtf
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/help/
-rw-r--r-- root/root       382 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/help/AnIndex
-rw-r--r-- root/root     18706 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/help/DegNorm.rdb
-rw-r--r-- root/root       408 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/help/DegNorm.rdx
-rw-r--r-- root/root       216 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/help/aliases.rds
-rw-r--r-- root/root       253 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/help/paths.rds
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/html/
-rw-r--r-- root/root      2789 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/html/00Index.html
-rw-r--r-- root/root      1335 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/html/R.css
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/libs/
-rw-r--r-- root/root    183984 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/libs/DegNorm.so
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/script/
-rw-r--r-- root/root      1561 2021-09-28 19:46 ./usr/lib/R/site-library/DegNorm/script/script.txt
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/share/
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/share/doc/r-bioc-degnorm/
-rw-r--r-- root/root       163 2021-09-28 19:46 ./usr/share/doc/r-bioc-degnorm/changelog.Debian.gz
-rw-r--r-- root/root      1213 2021-08-21 13:34 ./usr/share/doc/r-bioc-degnorm/copyright
control file for r-bioc-degnorm-dbgsym_1.2.0+ds-1_amd64.deb (click to toggle)
Package:r-bioc-degnorm-dbgsym
Source:r-bioc-degnorm
Version:1.2.0+ds-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size:945
Depends:r-bioc-degnorm (=1.2.0+ds-1)
Section:debug
Priority:optional
Description:
debug symbols for r-bioc-degnorm
Build-Ids:3b07a098833e15f743b7999f98267e8e09c1bfe6
lintian 2.94.0~bpo10+1 check for r-bioc-degnorm-dbgsym_1.2.0+ds-1_amd64.deb (click to toggle)
contents of r-bioc-degnorm-dbgsym_1.2.0+ds-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2021-09-28 19:46 ./
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/lib/
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/lib/debug/
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/lib/debug/.build-id/3b/
-rw-r--r-- root/root    957352 2021-09-28 19:46 ./usr/lib/debug/.build-id/3b/07a098833e15f743b7999f98267e8e09c1bfe6.debug
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/share/
drwxr-xr-x root/root         0 2021-09-28 19:46 ./usr/share/doc/
lrwxrwxrwx root/root         0 2021-09-28 19:46 ./usr/share/doc/r-bioc-degnorm-dbgsym -> r-bioc-degnorm

Timestamp: 28.09.2021 / 21:01:06 (UTC)