corner image corner image corner image corner image Debian NEW package overview for python-seqcluster
python-seqcluster_1.2.7-1_amd64.changes (click to toggle)
Format:1.8
Date:Tue, 07 Jul 2020 20:21:43 +0200
Source:python-seqcluster
Binary:python-seqcluster-doc python3-seqcluster seqcluster
Architecture:source all
Version:1.2.7-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
python-seqcluster-doc - analysis of small RNA in NGS data (documentation)
python3-seqcluster - analysis of small RNA in NGS data
seqcluster - analysis of small RNA in NGS data
Closes:903345
Changes:
python-seqcluster (1.2.7-1) unstable; urgency=medium

  * Initial release (Closes: #903345)
Files:
289455dc62c803644e0c86e4371d88be 2547 contrib/science optional python-seqcluster_1.2.7-1.dsc
f9158a8dae0c971934165f596f5b7e20 4829996 contrib/science optional python-seqcluster_1.2.7.orig.tar.xz
225bb32c6dbc65fbabc58f5167eaccc6 12684 contrib/science optional python-seqcluster_1.2.7-1.debian.tar.xz
d4fce2cc188aff0f38b66ab55e72fd42 1023700 contrib/doc optional python-seqcluster-doc_1.2.7-1_all.deb
1d2d9aa4a0f076c596481c35ba1baab6 10048 contrib/science optional python-seqcluster_1.2.7-1_amd64.buildinfo
475fddedfd6b69601f065466f3f93d2c 1669692 contrib/science optional python3-seqcluster_1.2.7-1_all.deb
a89c1f0dae16f34e93d5c77d9905c638 4252 contrib/science optional seqcluster_1.2.7-1_all.deb
python-seqcluster_1.2.7-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:python-seqcluster
Binary:python3-seqcluster, seqcluster, python-seqcluster-doc
Architecture:all
Version:1.2.7-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Steffen Moeller <moeller@debian.org>
Homepage:https://github.com/lpantano/seqcluster
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/med-team/python-seqcluster
Vcs-Git:https://salsa.debian.org/med-team/python-seqcluster.git
Build-Depends:debhelper-compat (=13), dh-python, python3-all, python3-setuptools, python3-toolz, python3-pybedtools, python3-pysam, python3-numpy, python3-progressbar, python3-nose, python3-recommonmark, python3-biopython, python3-pandas, python3-yaml, python3-mirtop, python3-scipy, samtools, bedtools, mirtop, python3-colorlog<!nocheck>, vienna-rna<!nocheck>, python3-sphinx
Package-List:python-seqcluster-doc deb contrib/doc optional arch=all python3-seqcluster deb contrib/science optional arch=all seqcluster deb contrib/science optional arch=all
Files:
f9158a8dae0c971934165f596f5b7e20 4829996 python-seqcluster_1.2.7.orig.tar.xz
225bb32c6dbc65fbabc58f5167eaccc6 12684 python-seqcluster_1.2.7-1.debian.tar.xz
lintian 2.90.0~bpo10+1 check for python-seqcluster_1.2.7-1.dsc (click to toggle)
O: python-seqcluster source: source-is-missing doc/post/mirqc_report.html line length is 770 characters (>512)
README.source for python-seqcluster_1.2.7-1.dsc (click to toggle)
No README.source in this package
control file for python-seqcluster-doc_1.2.7-1_all.deb (click to toggle)
Package:python-seqcluster-doc
Source:python-seqcluster
Version:1.2.7-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1274
Depends:libjs-sphinxdoc (>=2.4.3-5~)
Section:contrib/doc
Priority:optional
Homepage:https://github.com/lpantano/seqcluster
Description:
analysis of small RNA in NGS data (documentation)
 Seqcluster investigates small RNA sequences of all sorts in RNA
 sequencing data. This is especially helpful for the identification of
 RNA that is neither coding nor belonging to the already well-established
 group of miRNA, towards many tools feel constrained to.
 .
 This package provides the HTML documentation for the
 Python-implemented seqcluster tool.
lintian 2.90.0~bpo10+1 check for python-seqcluster-doc_1.2.7-1_all.deb (click to toggle)
contents of python-seqcluster-doc_1.2.7-1_all.deb (click to toggle)
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-rw-r--r-- root/root      1762 2019-06-19 23:58 ./usr/share/doc/python-seqcluster-doc/copyright
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-rw-r--r-- root/root       283 2019-04-18 22:01 ./usr/share/doc-base/seqcluster
lrwxrwxrwx root/root         0 2020-07-07 18:21 ./usr/share/doc/python-seqcluster-doc/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js
lrwxrwxrwx root/root         0 2020-07-07 18:21 ./usr/share/doc/python-seqcluster-doc/html/_static/jquery.js -> ../../../../javascript/sphinxdoc/1.0/jquery.js
lrwxrwxrwx root/root         0 2020-07-07 18:21 ./usr/share/doc/python-seqcluster-doc/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js
lrwxrwxrwx root/root         0 2020-07-07 18:21 ./usr/share/doc/python-seqcluster-doc/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js
lrwxrwxrwx root/root         0 2020-07-07 18:21 ./usr/share/doc/python-seqcluster-doc/html/_static/underscore.js -> ../../../../javascript/sphinxdoc/1.0/underscore.js
control file for python3-seqcluster_1.2.7-1_all.deb (click to toggle)
Package:python3-seqcluster
Source:python-seqcluster
Version:1.2.7-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:108056
Depends:python3:any, python3-pysam, python3-pybedtools, python3-scipy (>=0.15.1), python3-numpy, python3-nose (>=1.3.0), python3-progressbar (>=2.3.0), python3-pandas, python3-colorlog, python3-mirtop, python3-recommonmark, python3-yaml
Recommends:rna-star, bowtie2 | bowtie, fastqc, samtools, bedtools, mirtop, python3-cutadapt, libjs-bootstrap, libjs-jquery, libjs-jquery-datatables, libjs-jquery-tablesorter, libjs-jquery-ui, python3-dateutils, python3-tz, r-bioc-deseq2, r-cran-devtools, r-cran-dplyr, r-cran-ggplot2, r-cran-gplots, r-cran-gridextra, r-cran-gtools, r-cran-knitr, r-cran-pheatmap, r-cran-reshape, vienna-rna, r-bioc-edger, r-bioc-htsfilter, r-bioc-degreport
Suggests:seqcluster
Section:contrib/science
Priority:optional
Homepage:https://github.com/lpantano/seqcluster
Description:
analysis of small RNA in NGS data
 Identifies small RNA sequences of all sorts in RNA sequencing data. This is
 especially helpful for the identification of RNA that is neither coding nor
 belonging to the already well-established group of miRNA, towards many tools
 feel constrained to.
 .
 This package provides the Python module. For executables see the package
 'seqcluster'.
lintian 2.90.0~bpo10+1 check for python3-seqcluster_1.2.7-1_all.deb (click to toggle)
contents of python3-seqcluster_1.2.7-1_all.deb (click to toggle)
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control file for seqcluster_1.2.7-1_all.deb (click to toggle)
Package:seqcluster
Source:python-seqcluster
Version:1.2.7-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:14
Depends:python3:any, python3-seqcluster
Section:contrib/science
Priority:optional
Homepage:https://github.com/lpantano/seqcluster
Description:
analysis of small RNA in NGS data
 Seqcluster investigates small RNA sequences of all sorts in RNA
 sequencing data. This is especially helpful for the identification of
 RNA that is neither coding nor belonging to the already well-established
 group of miRNA, towards many tools feel constrained to.
lintian 2.90.0~bpo10+1 check for seqcluster_1.2.7-1_all.deb (click to toggle)
W: seqcluster: no-manual-page usr/bin/seqcluster
W: seqcluster: no-manual-page usr/bin/seqcluster_install
contents of seqcluster_1.2.7-1_all.deb (click to toggle)
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Timestamp: 25.08.2020 / 21:01:24 (UTC)