Debian NEW package overview for python-pangolearn
python-pangolearn_2022-02-02+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Wed, 16 Feb 2022 20:46:04 +0100
Source:python-pangolearn
Binary:python3-pangolearn
Architecture:source all
Version:2022-02-02+dfsg-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
python3-pangolearn - store of the trained model for pangolin to access
Closes:986458
Changes:
python-pangolearn (2022-02-02+dfsg-1) unstable; urgency=medium

  * Initial release (Closes: #986458)
Files:
26b78c874b39d3c5050aae2ab4f20e9a 2198 science optional python-pangolearn_2022-02-02+dfsg-1.dsc
9d51c0e4bb98851916db20621490b769 21605764 science optional python-pangolearn_2022-02-02+dfsg.orig.tar.xz
a02670de77d6e0a3939942349b7e8974 2128 science optional python-pangolearn_2022-02-02+dfsg-1.debian.tar.xz
b43db5d6b65a77db50ae9cc084d51ded 6741 science optional python-pangolearn_2022-02-02+dfsg-1_amd64.buildinfo
76ec941de1badca9b584ac87b5de611a 21574968 python optional python3-pangolearn_2022-02-02+dfsg-1_all.deb
python-pangolearn_2022-02-02+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:python-pangolearn
Binary:python3-pangolearn
Architecture:all
Version:2022-02-02+dfsg-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Andreas Tille <tille@debian.org>
Homepage:https://github.com/cov-lineages/pangoLEARN
Standards-Version:4.6.0
Vcs-Browser:https://salsa.debian.org/med-team/python-pangolearn
Vcs-Git:https://salsa.debian.org/med-team/python-pangolearn.git
Testsuite:autopkgtest-pkg-python
Build-Depends:debhelper-compat (=13), dh-python, python3-all, python3-setuptools
Package-List:python3-pangolearn deb python optional arch=all
Files:
9d51c0e4bb98851916db20621490b769 21605764 python-pangolearn_2022-02-02+dfsg.orig.tar.xz
a02670de77d6e0a3939942349b7e8974 2128 python-pangolearn_2022-02-02+dfsg-1.debian.tar.xz
lintian 2.94.0~bpo10+1 check for python-pangolearn_2022-02-02+dfsg-1.dsc (click to toggle)
README.source for python-pangolearn_2022-02-02+dfsg-1.dsc (click to toggle)
No README.source in this package
control file for python3-pangolearn_2022-02-02+dfsg-1_all.deb (click to toggle)
Package:python3-pangolearn
Source:python-pangolearn
Version:2022-02-02+dfsg-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:74718
Depends:python3:any
Suggests:mafft, iqtree
Section:python
Priority:optional
Homepage:https://github.com/cov-lineages/pangoLEARN
Description:
store of the trained model for pangolin to access
 Pangolin runs a multinomial logistic regression model trained against
 lineage assignments based on GISAID data.
 .
 Legacy pangolin runs using a guide tree and alignment hosted at
 cov-lineages/lineages. Some of this data is sourced from GISAID, but
 anonymised and encrypted to fit with guidelines. Appropriate permissions
 have been given and acknowledgements for the teams that have worked to
 provide the original SARS-CoV-2 genome sequences to GISAID are also
 hosted here.
 .
 This package contains the store of the trained model for pangolin.
lintian 2.94.0~bpo10+1 check for python3-pangolearn_2022-02-02+dfsg-1_all.deb (click to toggle)
contents of python3-pangolearn_2022-02-02+dfsg-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2022-02-16 19:46 ./
drwxr-xr-x root/root         0 2022-02-16 19:46 ./usr/
drwxr-xr-x root/root         0 2022-02-16 19:46 ./usr/lib/
drwxr-xr-x root/root         0 2022-02-16 19:46 ./usr/lib/python3/
drwxr-xr-x root/root         0 2022-02-16 19:46 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN/
-rw-r--r-- root/root        78 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/__init__.py
drwxr-xr-x root/root         0 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN/data/
-rwxr-xr-x root/root     63133 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/data/decisionTree_recall_report.csv
-rw-r--r-- root/root    403436 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN/data/decision_tree_rules.zip
-rw-r--r-- root/root   3723856 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/data/lineageTree.pb
-rw-r--r-- root/root     31117 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/data/lineage_recall_report.csv
-rw-r--r-- root/root  37093256 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/data/lineages.downsample.csv
-rw-r--r-- root/root  35082918 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/data/lineages.hash.csv
-rwxr-xr-x root/root     59956 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/data/randomForest_recall_report.csv
drwxr-xr-x root/root         0 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN/scripts/
-rw-r--r-- root/root         0 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/scripts/__init__.py
drwxr-xr-x root/root         0 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN/training/
-rw-r--r-- root/root         0 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/training/__init__.py
-rw-r--r-- root/root      9280 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/training/downsample.py
-rw-r--r-- root/root      3139 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/training/getDecisionTreeRules.py
-rw-r--r-- root/root      9284 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/training/pangoLEARNDecisionTree_v1.py
-rw-r--r-- root/root      1593 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/training/processOutputFile.py
drwxr-xr-x root/root         0 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN-2022_02_02.egg-info/
-rw-r--r-- root/root       272 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN-2022_02_02.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN-2022_02_02.egg-info/dependency_links.txt
-rw-r--r-- root/root        74 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN-2022_02_02.egg-info/entry_points.txt
-rw-r--r-- root/root         1 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN-2022_02_02.egg-info/not-zip-safe
-rw-r--r-- root/root        11 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN-2022_02_02.egg-info/top_level.txt
drwxr-xr-x root/root         0 2022-02-16 19:46 ./usr/share/
drwxr-xr-x root/root         0 2022-02-16 19:46 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-02-16 19:46 ./usr/share/doc/python3-pangolearn/
-rw-r--r-- root/root       169 2022-02-16 19:46 ./usr/share/doc/python3-pangolearn/changelog.Debian.gz
-rw-r--r-- root/root       981 2022-02-16 19:46 ./usr/share/doc/python3-pangolearn/copyright

Timestamp: 16.02.2022 / 22:02:25 (UTC)