Debian NEW package overview for python-pangolearn
| python-pangolearn_2022-02-02+dfsg-1_amd64.changes (click to toggle) | |
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| Format: | 1.8 |
| Date: | Wed, 16 Feb 2022 20:46:04 +0100 |
| Source: | python-pangolearn |
| Binary: | python3-pangolearn |
| Architecture: | source all |
| Version: | 2022-02-02+dfsg-1 |
| Distribution: | unstable |
| Urgency: | medium |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Changed-By: | Andreas Tille <tille@debian.org> |
| Description: | python3-pangolearn - store of the trained model for pangolin to access |
| Closes: | 986458 |
| Changes: | python-pangolearn (2022-02-02+dfsg-1) unstable; urgency=medium * Initial release (Closes: #986458) |
| Files: | 26b78c874b39d3c5050aae2ab4f20e9a 2198 science optional python-pangolearn_2022-02-02+dfsg-1.dsc 9d51c0e4bb98851916db20621490b769 21605764 science optional python-pangolearn_2022-02-02+dfsg.orig.tar.xz a02670de77d6e0a3939942349b7e8974 2128 science optional python-pangolearn_2022-02-02+dfsg-1.debian.tar.xz b43db5d6b65a77db50ae9cc084d51ded 6741 science optional python-pangolearn_2022-02-02+dfsg-1_amd64.buildinfo 76ec941de1badca9b584ac87b5de611a 21574968 python optional python3-pangolearn_2022-02-02+dfsg-1_all.deb |
| python-pangolearn_2022-02-02+dfsg-1.dsc (click to toggle) | |
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| Format: | 3.0 (quilt) |
| Source: | python-pangolearn |
| Binary: | python3-pangolearn |
| Architecture: | all |
| Version: | 2022-02-02+dfsg-1 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Uploaders: | Andreas Tille <tille@debian.org> |
| Homepage: | https://github.com/cov-lineages/pangoLEARN |
| Standards-Version: | 4.6.0 |
| Vcs-Browser: | https://salsa.debian.org/med-team/python-pangolearn |
| Vcs-Git: | https://salsa.debian.org/med-team/python-pangolearn.git |
| Testsuite: | autopkgtest-pkg-python |
| Build-Depends: | debhelper-compat (=13), dh-python, python3-all, python3-setuptools |
| Package-List: | python3-pangolearn deb python optional arch=all |
| Files: | 9d51c0e4bb98851916db20621490b769 21605764 python-pangolearn_2022-02-02+dfsg.orig.tar.xz a02670de77d6e0a3939942349b7e8974 2128 python-pangolearn_2022-02-02+dfsg-1.debian.tar.xz |
| README.source for python-pangolearn_2022-02-02+dfsg-1.dsc (click to toggle) | |
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| No README.source in this package | |
| control file for python3-pangolearn_2022-02-02+dfsg-1_all.deb (click to toggle) | |
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| Package: | python3-pangolearn |
| Source: | python-pangolearn |
| Version: | 2022-02-02+dfsg-1 |
| Architecture: | all |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Installed-Size: | 74718 |
| Depends: | python3:any |
| Suggests: | mafft, iqtree |
| Section: | python |
| Priority: | optional |
| Homepage: | https://github.com/cov-lineages/pangoLEARN |
| Description: | store of the trained model for pangolin to access Pangolin runs a multinomial logistic regression model trained against lineage assignments based on GISAID data. . Legacy pangolin runs using a guide tree and alignment hosted at cov-lineages/lineages. Some of this data is sourced from GISAID, but anonymised and encrypted to fit with guidelines. Appropriate permissions have been given and acknowledgements for the teams that have worked to provide the original SARS-CoV-2 genome sequences to GISAID are also hosted here. . This package contains the store of the trained model for pangolin. |
| contents of python3-pangolearn_2022-02-02+dfsg-1_all.deb (click to toggle) | |
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drwxr-xr-x root/root 0 2022-02-16 19:46 ./ drwxr-xr-x root/root 0 2022-02-16 19:46 ./usr/ drwxr-xr-x root/root 0 2022-02-16 19:46 ./usr/lib/ drwxr-xr-x root/root 0 2022-02-16 19:46 ./usr/lib/python3/ drwxr-xr-x root/root 0 2022-02-16 19:46 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN/ -rw-r--r-- root/root 78 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/__init__.py drwxr-xr-x root/root 0 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN/data/ -rwxr-xr-x root/root 63133 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/data/decisionTree_recall_report.csv -rw-r--r-- root/root 403436 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN/data/decision_tree_rules.zip -rw-r--r-- root/root 3723856 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/data/lineageTree.pb -rw-r--r-- root/root 31117 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/data/lineage_recall_report.csv -rw-r--r-- root/root 37093256 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/data/lineages.downsample.csv -rw-r--r-- root/root 35082918 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/data/lineages.hash.csv -rwxr-xr-x root/root 59956 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/data/randomForest_recall_report.csv drwxr-xr-x root/root 0 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN/scripts/ -rw-r--r-- root/root 0 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/scripts/__init__.py drwxr-xr-x root/root 0 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN/training/ -rw-r--r-- root/root 0 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/training/__init__.py -rw-r--r-- root/root 9280 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/training/downsample.py -rw-r--r-- root/root 3139 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/training/getDecisionTreeRules.py -rw-r--r-- root/root 9284 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/training/pangoLEARNDecisionTree_v1.py -rw-r--r-- root/root 1593 2022-02-08 21:46 ./usr/lib/python3/dist-packages/pangoLEARN/training/processOutputFile.py drwxr-xr-x root/root 0 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN-2022_02_02.egg-info/ -rw-r--r-- root/root 272 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN-2022_02_02.egg-info/PKG-INFO -rw-r--r-- root/root 1 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN-2022_02_02.egg-info/dependency_links.txt -rw-r--r-- root/root 74 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN-2022_02_02.egg-info/entry_points.txt -rw-r--r-- root/root 1 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN-2022_02_02.egg-info/not-zip-safe -rw-r--r-- root/root 11 2022-02-16 19:46 ./usr/lib/python3/dist-packages/pangoLEARN-2022_02_02.egg-info/top_level.txt drwxr-xr-x root/root 0 2022-02-16 19:46 ./usr/share/ drwxr-xr-x root/root 0 2022-02-16 19:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-02-16 19:46 ./usr/share/doc/python3-pangolearn/ -rw-r--r-- root/root 169 2022-02-16 19:46 ./usr/share/doc/python3-pangolearn/changelog.Debian.gz -rw-r--r-- root/root 981 2022-02-16 19:46 ./usr/share/doc/python3-pangolearn/copyright | |
| copyright of python3-pangolearn_2022-02-02+dfsg-1_all.deb (click to toggle) | |
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Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: pangoLEARN
Source: https://github.com/cov-lineages/pangoLEARN
Files-Excluded: */*.joblib
*/*.joblib.zip
Files: *
Copyright: 2018-2021 cov-lineages group
License: GPL-3+
Files: debian/*
Copyright: 2020 Andreas Tille <tille@debian.org>
License: GPL-3+
License: GPL-3+
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
.
On Debian systems you can find the full text of the GNU General Public
License at /usr/share/common-licenses/GPL-3.
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Timestamp: 16.02.2022 / 22:02:25 (UTC)