Debian NEW package overview for python-pangolearn
python-pangolearn_2021-10-18+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Tue, 06 Apr 2021 16:37:52 +0200
Source:python-pangolearn
Binary:python3-pangolearn
Architecture:source all
Version:2021-10-18+dfsg-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
python3-pangolearn - store of the trained model for pangolin to access
Closes:986458
Changes:
python-pangolearn (2021-10-18+dfsg-1) unstable; urgency=medium

  * Initial release (Closes: #986458)
Files:
09ed83fe6a30602f8d745ebe02b0b56c 2198 science optional python-pangolearn_2021-10-18+dfsg-1.dsc
05690cc9a6bc3f934b1424a24c9b31e8 13111380 science optional python-pangolearn_2021-10-18+dfsg.orig.tar.xz
f6dfa82931752aae2da0c3ab30accc5d 2116 science optional python-pangolearn_2021-10-18+dfsg-1.debian.tar.xz
12e6d58402b58677c9caac74d02a47af 6523 science optional python-pangolearn_2021-10-18+dfsg-1_amd64.buildinfo
6f180dcb429add405158f81be59866ae 13064444 python optional python3-pangolearn_2021-10-18+dfsg-1_all.deb
python-pangolearn_2021-10-18+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:python-pangolearn
Binary:python3-pangolearn
Architecture:all
Version:2021-10-18+dfsg-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Andreas Tille <tille@debian.org>
Homepage:https://github.com/cov-lineages/pangoLEARN
Standards-Version:4.5.1
Vcs-Browser:https://salsa.debian.org/med-team/python-pangolearn
Vcs-Git:https://salsa.debian.org/med-team/python-pangolearn.git
Testsuite:autopkgtest-pkg-python
Build-Depends:debhelper-compat (=13), dh-python, python3-all, python3-setuptools
Package-List:python3-pangolearn deb python optional arch=all
Files:
05690cc9a6bc3f934b1424a24c9b31e8 13111380 python-pangolearn_2021-10-18+dfsg.orig.tar.xz
f6dfa82931752aae2da0c3ab30accc5d 2116 python-pangolearn_2021-10-18+dfsg-1.debian.tar.xz
lintian 2.94.0~bpo10+1 check for python-pangolearn_2021-10-18+dfsg-1.dsc (click to toggle)
README.source for python-pangolearn_2021-10-18+dfsg-1.dsc (click to toggle)
No README.source in this package
control file for python3-pangolearn_2021-10-18+dfsg-1_all.deb (click to toggle)
Package:python3-pangolearn
Source:python-pangolearn
Version:2021-10-18+dfsg-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:38088
Depends:python3:any
Suggests:mafft, iqtree
Section:python
Priority:optional
Homepage:https://github.com/cov-lineages/pangoLEARN
Description:
store of the trained model for pangolin to access
 Pangolin runs a multinomial logistic regression model trained against
 lineage assignments based on GISAID data.
 .
 Legacy pangolin runs using a guide tree and alignment hosted at
 cov-lineages/lineages. Some of this data is sourced from GISAID, but
 anonymised and encrypted to fit with guidelines. Appropriate permissions
 have been given and acknowledgements for the teams that have worked to
 provide the original SARS-CoV-2 genome sequences to GISAID are also
 hosted here.
 .
 This package contains the store of the trained model for pangolin.
lintian 2.94.0~bpo10+1 check for python3-pangolearn_2021-10-18+dfsg-1_all.deb (click to toggle)
contents of python3-pangolearn_2021-10-18+dfsg-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2021-04-06 14:37 ./
drwxr-xr-x root/root         0 2021-04-06 14:37 ./usr/
drwxr-xr-x root/root         0 2021-04-06 14:37 ./usr/lib/
drwxr-xr-x root/root         0 2021-04-06 14:37 ./usr/lib/python3/
drwxr-xr-x root/root         0 2021-04-06 14:37 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/
-rw-r--r-- root/root        77 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/__init__.py
drwxr-xr-x root/root         0 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/data/
-rw-r--r-- root/root    340777 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/data/decision_tree_rules.zip
-rw-r--r-- root/root   2945768 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/data/lineageTree.pb
-rw-r--r-- root/root     31117 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/data/lineage_recall_report.csv
-rw-r--r-- root/root  11614095 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/data/lineages.downsample.csv
-rw-r--r-- root/root  24016927 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/data/lineages.hash.csv
drwxr-xr-x root/root         0 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/scripts/
-rw-r--r-- root/root         0 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/scripts/__init__.py
drwxr-xr-x root/root         0 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/training/
-rw-r--r-- root/root         0 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/training/__init__.py
-rw-r--r-- root/root      9280 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/training/downsample.py
-rw-r--r-- root/root      3139 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/training/getDecisionTreeRules.py
-rw-r--r-- root/root      9284 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/training/pangoLEARNDecisionTree_v1.py
-rw-r--r-- root/root      1593 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/training/processOutputFile.py
drwxr-xr-x root/root         0 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN-2021_10_18.egg-info/
-rw-r--r-- root/root       272 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN-2021_10_18.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN-2021_10_18.egg-info/dependency_links.txt
-rw-r--r-- root/root        74 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN-2021_10_18.egg-info/entry_points.txt
-rw-r--r-- root/root         1 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN-2021_10_18.egg-info/not-zip-safe
-rw-r--r-- root/root        11 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN-2021_10_18.egg-info/top_level.txt
drwxr-xr-x root/root         0 2021-04-06 14:37 ./usr/share/
drwxr-xr-x root/root         0 2021-04-06 14:37 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-04-06 14:37 ./usr/share/doc/python3-pangolearn/
-rw-r--r-- root/root       169 2021-04-06 14:37 ./usr/share/doc/python3-pangolearn/changelog.Debian.gz
-rw-r--r-- root/root       950 2021-04-06 14:37 ./usr/share/doc/python3-pangolearn/copyright

Timestamp: 08.11.2021 / 10:01:07 (UTC)