Debian NEW package overview for python-pangolearn
| python-pangolearn_2021-04-01-1_amd64.changes (click to toggle) | |
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| Format: | 1.8 |
| Date: | Tue, 06 Apr 2021 16:37:52 +0200 |
| Source: | python-pangolearn |
| Binary: | python3-pangolearn |
| Architecture: | source all |
| Version: | 2021-04-01-1 |
| Distribution: | unstable |
| Urgency: | medium |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Changed-By: | Andreas Tille <tille@debian.org> |
| Description: | python3-pangolearn - store of the trained model for pangolin to access |
| Closes: | 986458 |
| Changes: | python-pangolearn (2021-04-01-1) unstable; urgency=medium * Initial release (Closes: #986458) |
| Files: | 6ba6bd85055bd7c8a261ccc60020e5e2 2160 science optional python-pangolearn_2021-04-01-1.dsc 3e29918bae8d9dc5bb4b81b458a5ff66 7130002 science optional python-pangolearn_2021-04-01.orig.tar.gz 968b73c8796f774d45910bfb17ead5c9 2064 science optional python-pangolearn_2021-04-01-1.debian.tar.xz fca93fa49cea0efab6c7a43e13378194 6331 science optional python-pangolearn_2021-04-01-1_amd64.buildinfo fbb4e2f0146fed0475d567939dc251b7 4347880 python optional python3-pangolearn_2021-04-01-1_all.deb |
| python-pangolearn_2021-04-01-1.dsc (click to toggle) | |
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| Format: | 3.0 (quilt) |
| Source: | python-pangolearn |
| Binary: | python3-pangolearn |
| Architecture: | all |
| Version: | 2021-04-01-1 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Uploaders: | Andreas Tille <tille@debian.org> |
| Homepage: | https://github.com/cov-lineages/pangoLEARN |
| Standards-Version: | 4.5.1 |
| Vcs-Browser: | https://salsa.debian.org/med-team/python-pangolearn |
| Vcs-Git: | https://salsa.debian.org/med-team/python-pangolearn.git |
| Testsuite: | autopkgtest-pkg-python |
| Build-Depends: | debhelper-compat (=13), dh-python, python3-all, python3-setuptools |
| Package-List: | python3-pangolearn deb python optional arch=all |
| Files: | 3e29918bae8d9dc5bb4b81b458a5ff66 7130002 python-pangolearn_2021-04-01.orig.tar.gz 968b73c8796f774d45910bfb17ead5c9 2064 python-pangolearn_2021-04-01-1.debian.tar.xz |
| README.source for python-pangolearn_2021-04-01-1.dsc (click to toggle) | |
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| No README.source in this package | |
| control file for python3-pangolearn_2021-04-01-1_all.deb (click to toggle) | |
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| Package: | python3-pangolearn |
| Source: | python-pangolearn |
| Version: | 2021-04-01-1 |
| Architecture: | all |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Installed-Size: | 100488 |
| Depends: | python3:any |
| Suggests: | mafft, iqtree |
| Section: | python |
| Priority: | optional |
| Homepage: | https://github.com/cov-lineages/pangoLEARN |
| Description: | store of the trained model for pangolin to access Pangolin runs a multinomial logistic regression model trained against lineage assignments based on GISAID data. . Legacy pangolin runs using a guide tree and alignment hosted at cov-lineages/lineages. Some of this data is sourced from GISAID, but anonymised and encrypted to fit with guidelines. Appropriate permissions have been given and acknowledgements for the teams that have worked to provide the original SARS-CoV-2 genome sequences to GISAID are also hosted here. . This package contains the store of the trained model for pangolin. |
| contents of python3-pangolearn_2021-04-01-1_all.deb (click to toggle) | |
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drwxr-xr-x root/root 0 2021-04-06 14:37 ./ drwxr-xr-x root/root 0 2021-04-06 14:37 ./usr/ drwxr-xr-x root/root 0 2021-04-06 14:37 ./usr/lib/ drwxr-xr-x root/root 0 2021-04-06 14:37 ./usr/lib/python3/ drwxr-xr-x root/root 0 2021-04-06 14:37 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/ -rw-r--r-- root/root 51 2021-04-02 09:19 ./usr/lib/python3/dist-packages/pangoLEARN/__init__.py drwxr-xr-x root/root 0 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN/data/ -rw-r--r-- root/root 56082 2021-04-02 09:19 ./usr/lib/python3/dist-packages/pangoLEARN/data/decisionTreeHeaders_v1.joblib -rw-r--r-- root/root 958852 2021-04-02 09:19 ./usr/lib/python3/dist-packages/pangoLEARN/data/decisionTree_v1.joblib -rw-r--r-- root/root 48464607 2021-04-02 09:19 ./usr/lib/python3/dist-packages/pangoLEARN/data/decision_tree_rules.txt -rw-r--r-- root/root 31117 2021-04-02 09:19 ./usr/lib/python3/dist-packages/pangoLEARN/data/lineage_recall_report.csv -rw-r--r-- root/root 5784953 2021-04-02 09:19 ./usr/lib/python3/dist-packages/pangoLEARN/data/lineages.downsample.csv -rw-r--r-- root/root 47579080 2021-04-02 09:19 ./usr/lib/python3/dist-packages/pangoLEARN/data/lineages.metadata.csv drwxr-xr-x root/root 0 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN-2021_04_01.egg-info/ -rw-r--r-- root/root 261 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN-2021_04_01.egg-info/PKG-INFO -rw-r--r-- root/root 1 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN-2021_04_01.egg-info/dependency_links.txt -rw-r--r-- root/root 74 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN-2021_04_01.egg-info/entry_points.txt -rw-r--r-- root/root 1 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN-2021_04_01.egg-info/not-zip-safe -rw-r--r-- root/root 11 2021-04-06 14:37 ./usr/lib/python3/dist-packages/pangoLEARN-2021_04_01.egg-info/top_level.txt drwxr-xr-x root/root 0 2021-04-06 14:37 ./usr/share/ drwxr-xr-x root/root 0 2021-04-06 14:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-04-06 14:37 ./usr/share/doc/python3-pangolearn/ -rw-r--r-- root/root 165 2021-04-06 14:37 ./usr/share/doc/python3-pangolearn/changelog.Debian.gz -rw-r--r-- root/root 923 2021-04-06 14:37 ./usr/share/doc/python3-pangolearn/copyright | |
| copyright of python3-pangolearn_2021-04-01-1_all.deb (click to toggle) | |
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Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: pangoLEARN Source: https://github.com/cov-lineages/pangoLEARN Files: * Copyright: 2018-2021 cov-lineages group License: GPL-3+ Files: debian/* Copyright: 2020 Andreas Tille <tille@debian.org> License: GPL-3+ License: GPL-3+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . On Debian systems you can find the full text of the GNU General Public License at /usr/share/common-licenses/GPL-3. | |
Timestamp: 06.04.2021 / 16:00:57 (UTC)