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python-pairix_0.3.7-1_amd64.changes (click to toggle)
Format:1.8
Date:Sun, 14 Jun 2020 08:37:25 +0200
Source:python-pairix
Binary:python3-pairix python3-pairix-dbgsym python3-pairix-examples
Architecture:source amd64 all
Version:0.3.7-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
python3-pairix - 1D/2D indexing and querying with a pair of genomic coordinates
python3-pairix-examples - 1D/2D indexing and querying with a pair of genomic coordinates (e
Closes:962790
Changes:
python-pairix (0.3.7-1) unstable; urgency=medium

  * Initial release (Closes: #962790)
Files:
76bda850331b7b3c9c3bdb4252b9caa3 2230 science optional python-pairix_0.3.7-1.dsc
a1f9b3c7b13d904dfe736cf5e66c2385 175413839 science optional python-pairix_0.3.7.orig.tar.gz
976100b9e6f35a301d07e3b3bc0e0e58 2840 science optional python-pairix_0.3.7-1.debian.tar.xz
51bfe6736aa3daa9ab9ad03200b743c2 7199 science optional python-pairix_0.3.7-1_amd64.buildinfo
d377b4fdd92878f92095cd129f485b07 110948 debug optional python3-pairix-dbgsym_0.3.7-1_amd64.deb
9c834bd6fbf27d5886634fb00820c31d 172507764 science optional python3-pairix-examples_0.3.7-1_all.deb
82a4e659a84a28c5f8154bd3c669e6f4 42340 python optional python3-pairix_0.3.7-1_amd64.deb
python-pairix_0.3.7-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:python-pairix
Binary:python3-pairix, python3-pairix-examples
Architecture:any all
Version:0.3.7-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Andreas Tille <tille@debian.org>
Homepage:https://github.com/4dn-dcic/pairix
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/med-team/python-pairix
Vcs-Git:https://salsa.debian.org/med-team/python-pairix.git
Testsuite:autopkgtest
Testsuite-Triggers:python3-pytest
Build-Depends:debhelper-compat (=13), dh-python, python3-all-dev, python3-setuptools, zlib1g-dev, python3-pytest<!nocheck>
Package-List:python3-pairix deb python optional arch=any python3-pairix-examples deb science optional arch=all
Files:
a1f9b3c7b13d904dfe736cf5e66c2385 175413839 python-pairix_0.3.7.orig.tar.gz
976100b9e6f35a301d07e3b3bc0e0e58 2840 python-pairix_0.3.7-1.debian.tar.xz
lintian 2.79.0~bpo10+1 check for python-pairix_0.3.7-1.dsc (click to toggle)
README.source for python-pairix_0.3.7-1.dsc (click to toggle)
No README.source in this package
control file for python3-pairix_0.3.7-1_amd64.deb (click to toggle)
Package:python3-pairix
Source:python-pairix
Version:0.3.7-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:120
Depends:python3 (<<3.9), python3 (>=3.8~)
Section:python
Priority:optional
Homepage:https://github.com/4dn-dcic/pairix
Description:
1D/2D indexing and querying with a pair of genomic coordinates
 Pairix is a tool for indexing and querying on a block-compressed text
 file containing pairs of genomic coordinates.
 .
 Pairix is a stand-alone C program that was written on top of tabix as a
 tool for the 4DN-standard pairs file format describing Hi-C data:
 pairs_format_specification.md
 .
 However, Pairix can be used as a generic tool for indexing and querying
 any bgzipped text file containing genomic coordinates, for either 2D- or
 1D- indexing and querying.
 .
 For example: given the custom text file below, you want to extract
 specific lines from the Pairs file further below. An awk command would
 read the Pairs file from beginning to end. Pairix creates an index and
 uses it to access the file from a relevant position by taking advantage
 of bgzf compression, allowing for a fast query on large files.
lintian 2.79.0~bpo10+1 check for python3-pairix_0.3.7-1_amd64.deb (click to toggle)
E: python3-pairix: missing-dependency-on-libc needed by usr/lib/python3/dist-packages/pypairix.cpython-38-x86_64-linux-gnu.so
contents of python3-pairix_0.3.7-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-14 06:37 ./
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/lib/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/lib/python3/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/lib/python3/dist-packages/pypairix-0.3.7.egg-info/
-rw-r--r-- root/root      1074 2020-06-14 06:37 ./usr/lib/python3/dist-packages/pypairix-0.3.7.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2020-06-14 06:37 ./usr/lib/python3/dist-packages/pypairix-0.3.7.egg-info/dependency_links.txt
-rw-r--r-- root/root         9 2020-06-14 06:37 ./usr/lib/python3/dist-packages/pypairix-0.3.7.egg-info/top_level.txt
-rw-r--r-- root/root    105152 2020-06-14 06:37 ./usr/lib/python3/dist-packages/pypairix.cpython-38-x86_64-linux-gnu.so
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/doc/python3-pairix/
-rw-r--r-- root/root       159 2020-06-14 06:37 ./usr/share/doc/python3-pairix/changelog.Debian.gz
-rw-r--r-- root/root      1331 2020-06-14 06:37 ./usr/share/doc/python3-pairix/copyright
control file for python3-pairix-dbgsym_0.3.7-1_amd64.deb (click to toggle)
Package:python3-pairix-dbgsym
Source:python-pairix
Version:0.3.7-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:129
Depends:python3-pairix (=0.3.7-1)
Section:debug
Priority:optional
Description:
debug symbols for python3-pairix
Build-Ids:40834b33831310ad4956f7afdf885b8c233d658e
lintian 2.79.0~bpo10+1 check for python3-pairix-dbgsym_0.3.7-1_amd64.deb (click to toggle)
contents of python3-pairix-dbgsym_0.3.7-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-14 06:37 ./
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/lib/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/lib/debug/.build-id/40/
-rw-r--r-- root/root    120968 2020-06-14 06:37 ./usr/lib/debug/.build-id/40/834b33831310ad4956f7afdf885b8c233d658e.debug
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-06-14 06:37 ./usr/share/doc/python3-pairix-dbgsym -> python3-pairix
control file for python3-pairix-examples_0.3.7-1_all.deb (click to toggle)
Package:python3-pairix-examples
Source:python-pairix
Version:0.3.7-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:168472
Enhances:python3-pairix
Section:science
Priority:optional
Homepage:https://github.com/4dn-dcic/pairix
Description:
1D/2D indexing and querying with a pair of genomic coordinates (examples)
 Pairix is a tool for indexing and querying on a block-compressed text
 file containing pairs of genomic coordinates.
 .
 Pairix is a stand-alone C program that was written on top of tabix as a
 tool for the 4DN-standard pairs file format describing Hi-C data:
 pairs_format_specification.md
 .
 However, Pairix can be used as a generic tool for indexing and querying
 any bgzipped text file containing genomic coordinates, for either 2D- or
 1D- indexing and querying.
 .
 For example: given the custom text file below, you want to extract
 specific lines from the Pairs file further below. An awk command would
 read the Pairs file from beginning to end. Pairix creates an index and
 uses it to access the file from a relevant position by taking advantage
 of bgzf compression, allowing for a fast query on large files.
 .
 This package contains some example data to test the package.
lintian 2.79.0~bpo10+1 check for python3-pairix-examples_0.3.7-1_all.deb (click to toggle)
contents of python3-pairix-examples_0.3.7-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-14 06:37 ./
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/doc/python3-pairix/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/doc/python3-pairix/examples/
-rw-r--r-- root/root         6 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/VERSION.txt
-rw-r--r-- root/root 172480584 2020-06-14 06:37 ./usr/share/doc/python3-pairix/examples/samples.tar.xz
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/doc/python3-pairix/examples/test/
-rwxr-xr-x root/root       908 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/test/inefficient-merger-for-testing
-rw-r--r-- root/root       609 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/test/reindex_samples.sh
-rw-r--r-- root/root      3800 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/test/test.py.gz
-rw-r--r-- root/root      1280 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/test/test_c.sh.gz
-rw-r--r-- root/root      1920 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/test/test_c_oldindex.sh.gz
-rw-r--r-- root/root      1035 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/test/test_c_oldindex2.sh.gz
-rw-r--r-- root/root      3222 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/test/test_oldindex.py.gz
-rw-r--r-- root/root      3202 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/test/test_oldindex2.py.gz
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/doc/python3-pairix-examples/
-rw-r--r-- root/root       159 2020-06-14 06:37 ./usr/share/doc/python3-pairix-examples/changelog.Debian.gz
-rw-r--r-- root/root      1331 2020-06-14 06:37 ./usr/share/doc/python3-pairix-examples/copyright

Timestamp: 14.06.2020 / 08:11:19 (UTC)