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python-pairix_0.3.7-1_amd64.changes (click to toggle)
Format:1.8
Date:Sun, 14 Jun 2020 08:37:25 +0200
Source:python-pairix
Binary:python3-pairix python3-pairix-dbgsym python3-pairix-examples
Architecture:source amd64 all
Version:0.3.7-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
python3-pairix - 1D/2D indexing and querying with a pair of genomic coordinates
python3-pairix-examples - 1D/2D indexing and querying with a pair of genomic coordinates (e
Closes:962790
Changes:
python-pairix (0.3.7-1) unstable; urgency=medium

  * Initial release (Closes: #962790)
Files:
538f8ac1e69c723d62fa6a71cf0709fb 2230 science optional python-pairix_0.3.7-1.dsc
a1f9b3c7b13d904dfe736cf5e66c2385 175413839 science optional python-pairix_0.3.7.orig.tar.gz
30e2f527a8984e635393e12d04d6c8ef 2868 science optional python-pairix_0.3.7-1.debian.tar.xz
80cc82b81007bc8b75135f6fba53a899 7263 science optional python-pairix_0.3.7-1_amd64.buildinfo
7e2d660c6c19b73bdbfe56cc4b7b8121 110936 debug optional python3-pairix-dbgsym_0.3.7-1_amd64.deb
15a278fc03f98cbcfc90ca8e68f42b43 172098780 science optional python3-pairix-examples_0.3.7-1_all.deb
ef955f9df3bf937eb33bab02f0864426 42356 python optional python3-pairix_0.3.7-1_amd64.deb
python-pairix_0.3.7-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:python-pairix
Binary:python3-pairix, python3-pairix-examples
Architecture:any all
Version:0.3.7-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Andreas Tille <tille@debian.org>
Homepage:https://github.com/4dn-dcic/pairix
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/med-team/python-pairix
Vcs-Git:https://salsa.debian.org/med-team/python-pairix.git
Testsuite:autopkgtest
Testsuite-Triggers:python3-pytest
Build-Depends:debhelper-compat (=13), dh-python, python3-all-dev, python3-setuptools, zlib1g-dev, python3-pytest<!nocheck>
Package-List:python3-pairix deb python optional arch=any python3-pairix-examples deb science optional arch=all
Files:
a1f9b3c7b13d904dfe736cf5e66c2385 175413839 python-pairix_0.3.7.orig.tar.gz
30e2f527a8984e635393e12d04d6c8ef 2868 python-pairix_0.3.7-1.debian.tar.xz
lintian 2.79.0~bpo10+1 check for python-pairix_0.3.7-1.dsc (click to toggle)
README.source for python-pairix_0.3.7-1.dsc (click to toggle)
No README.source in this package
control file for python3-pairix_0.3.7-1_amd64.deb (click to toggle)
Package:python3-pairix
Source:python-pairix
Version:0.3.7-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:120
Depends:python3 (<<3.9), python3 (>=3.8~)
Section:python
Priority:optional
Homepage:https://github.com/4dn-dcic/pairix
Description:
1D/2D indexing and querying with a pair of genomic coordinates
 Pairix is a tool for indexing and querying on a block-compressed text
 file containing pairs of genomic coordinates.
 .
 Pairix is a stand-alone C program that was written on top of tabix as a
 tool for the 4DN-standard pairs file format describing Hi-C data:
 pairs_format_specification.md
 .
 However, Pairix can be used as a generic tool for indexing and querying
 any bgzipped text file containing genomic coordinates, for either 2D- or
 1D- indexing and querying.
 .
 For example: given the custom text file below, you want to extract
 specific lines from the Pairs file further below. An awk command would
 read the Pairs file from beginning to end. Pairix creates an index and
 uses it to access the file from a relevant position by taking advantage
 of bgzf compression, allowing for a fast query on large files.
lintian 2.79.0~bpo10+1 check for python3-pairix_0.3.7-1_amd64.deb (click to toggle)
E: python3-pairix: missing-dependency-on-libc needed by usr/lib/python3/dist-packages/pypairix.cpython-38-x86_64-linux-gnu.so
contents of python3-pairix_0.3.7-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-14 06:37 ./
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/lib/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/lib/python3/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/lib/python3/dist-packages/pypairix-0.3.7.egg-info/
-rw-r--r-- root/root      1074 2020-06-14 06:37 ./usr/lib/python3/dist-packages/pypairix-0.3.7.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2020-06-14 06:37 ./usr/lib/python3/dist-packages/pypairix-0.3.7.egg-info/dependency_links.txt
-rw-r--r-- root/root         9 2020-06-14 06:37 ./usr/lib/python3/dist-packages/pypairix-0.3.7.egg-info/top_level.txt
-rw-r--r-- root/root    105152 2020-06-14 06:37 ./usr/lib/python3/dist-packages/pypairix.cpython-38-x86_64-linux-gnu.so
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/doc/python3-pairix/
-rw-r--r-- root/root       159 2020-06-14 06:37 ./usr/share/doc/python3-pairix/changelog.Debian.gz
-rw-r--r-- root/root      1378 2020-06-14 06:37 ./usr/share/doc/python3-pairix/copyright
control file for python3-pairix-dbgsym_0.3.7-1_amd64.deb (click to toggle)
Package:python3-pairix-dbgsym
Source:python-pairix
Version:0.3.7-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:129
Depends:python3-pairix (=0.3.7-1)
Section:debug
Priority:optional
Description:
debug symbols for python3-pairix
Build-Ids:7c10642b22977a0cac134a78e29f603cdd494289
lintian 2.79.0~bpo10+1 check for python3-pairix-dbgsym_0.3.7-1_amd64.deb (click to toggle)
contents of python3-pairix-dbgsym_0.3.7-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-14 06:37 ./
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/lib/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/lib/debug/.build-id/7c/
-rw-r--r-- root/root    120912 2020-06-14 06:37 ./usr/lib/debug/.build-id/7c/10642b22977a0cac134a78e29f603cdd494289.debug
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-06-14 06:37 ./usr/share/doc/python3-pairix-dbgsym -> python3-pairix
control file for python3-pairix-examples_0.3.7-1_all.deb (click to toggle)
Package:python3-pairix-examples
Source:python-pairix
Version:0.3.7-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:168072
Enhances:python3-pairix
Section:science
Priority:optional
Homepage:https://github.com/4dn-dcic/pairix
Description:
1D/2D indexing and querying with a pair of genomic coordinates (examples)
 Pairix is a tool for indexing and querying on a block-compressed text
 file containing pairs of genomic coordinates.
 .
 Pairix is a stand-alone C program that was written on top of tabix as a
 tool for the 4DN-standard pairs file format describing Hi-C data:
 pairs_format_specification.md
 .
 However, Pairix can be used as a generic tool for indexing and querying
 any bgzipped text file containing genomic coordinates, for either 2D- or
 1D- indexing and querying.
 .
 For example: given the custom text file below, you want to extract
 specific lines from the Pairs file further below. An awk command would
 read the Pairs file from beginning to end. Pairix creates an index and
 uses it to access the file from a relevant position by taking advantage
 of bgzf compression, allowing for a fast query on large files.
 .
 This package contains some example data to test the package.
lintian 2.79.0~bpo10+1 check for python3-pairix-examples_0.3.7-1_all.deb (click to toggle)
contents of python3-pairix-examples_0.3.7-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-14 06:37 ./
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/doc/python3-pairix/
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/doc/python3-pairix/examples/
-rw-r--r-- root/root         6 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/VERSION.txt
-rw-r--r-- root/root 172071892 2020-06-14 06:37 ./usr/share/doc/python3-pairix/examples/samples.tar.xz
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/doc/python3-pairix/examples/test/
-rwxr-xr-x root/root       908 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/test/inefficient-merger-for-testing
-rw-r--r-- root/root       609 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/test/reindex_samples.sh
-rw-r--r-- root/root      3800 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/test/test.py.gz
-rw-r--r-- root/root      1280 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/test/test_c.sh.gz
-rw-r--r-- root/root      1920 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/test/test_c_oldindex.sh.gz
-rw-r--r-- root/root      1035 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/test/test_c_oldindex2.sh.gz
-rw-r--r-- root/root      3222 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/test/test_oldindex.py.gz
-rw-r--r-- root/root      3202 2019-04-11 14:48 ./usr/share/doc/python3-pairix/examples/test/test_oldindex2.py.gz
drwxr-xr-x root/root         0 2020-06-14 06:37 ./usr/share/doc/python3-pairix-examples/
-rw-r--r-- root/root       159 2020-06-14 06:37 ./usr/share/doc/python3-pairix-examples/changelog.Debian.gz
-rw-r--r-- root/root      1378 2020-06-14 06:37 ./usr/share/doc/python3-pairix-examples/copyright

Timestamp: 15.07.2020 / 10:01:44 (UTC)