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python-nanoget_1.12.1-1_amd64.changes (click to toggle)
Format:1.8
Date:Sat, 25 Apr 2020 08:38:21 +0200
Source:python-nanoget
Binary:python3-nanoget python3-nanoget-examples
Architecture:source all
Version:1.12.1-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
python3-nanoget - extract information from Oxford Nanopore sequencing data and alig
python3-nanoget-examples - example data for python3-nanoget (dealing with Oxford Nanopore da
Closes:958711
Changes:
python-nanoget (1.12.1-1) unstable; urgency=medium

  * Initial release (Closes: #958711)
Files:
1284ac457f2631813230cfec433d46f6 2214 science optional python-nanoget_1.12.1-1.dsc
e79e28b43018af50bb3c9a139efe788c 9854 science optional python-nanoget_1.12.1.orig.tar.gz
589e49bd56e7efb30c040b969c94fdef 26143324 science optional python-nanoget_1.12.1-1.debian.tar.xz
855467ba009ab243bbd8862645455eca 7935 science optional python-nanoget_1.12.1-1_amd64.buildinfo
6f107f4294f896576f744c8c827b77ad 26160524 python optional python3-nanoget-examples_1.12.1-1_all.deb
bc8dfc261f151955dcade1a24e1c37a2 10396 python optional python3-nanoget_1.12.1-1_all.deb
python-nanoget_1.12.1-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:python-nanoget
Binary:python3-nanoget, python3-nanoget-examples
Architecture:all
Version:1.12.1-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Andreas Tille <tille@debian.org>
Homepage:https://github.com/wdecoster/nanoget
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/med-team/python-nanoget
Vcs-Git:https://salsa.debian.org/med-team/python-nanoget.git
Testsuite:autopkgtest
Build-Depends:debhelper-compat (=12), dh-python, python3, python3-setuptools, python3-biopython, python3-nanomath, python3-pysam
Package-List:python3-nanoget deb python optional arch=all python3-nanoget-examples deb python optional arch=all
Files:
e79e28b43018af50bb3c9a139efe788c 9854 python-nanoget_1.12.1.orig.tar.gz
589e49bd56e7efb30c040b969c94fdef 26143324 python-nanoget_1.12.1-1.debian.tar.xz
lintian 2.66.0~bpo10+1 check for python-nanoget_1.12.1-1.dsc (click to toggle)
README.source for python-nanoget_1.12.1-1.dsc (click to toggle)
No README.source in this package
control file for python3-nanoget_1.12.1-1_all.deb (click to toggle)
Package:python3-nanoget
Source:python-nanoget
Version:1.12.1-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:49
Depends:python3-biopython, python3-nanomath, python3-numpy, python3-pandas, python3-pysam, python3:any
Section:python
Priority:optional
Homepage:https://github.com/wdecoster/nanoget
Description:
extract information from Oxford Nanopore sequencing data and alignments
 The Python3 module nanoget provides functions to extract useful metrics
 from Oxford Nanopore sequencing reads and alignments.
 .
 Data can be presented in the following formats, using the following functions:
 .
  * sorted bam file process_bam(bamfile, threads)
  * standard fastq file process_fastq_plain(fastqfile, 'threads')
  * fastq file with metadata from MinKNOW or Albacore
    process_fastq_rich(fastqfile)
  * sequencing_summary file generated by Albacore
    process_summary(sequencing_summary.txt, 'readtype')
 .
 Fastq files can be compressed using gzip, bzip2 or bgzip. The data is
 returned as a pandas DataFrame with standardized headernames for
 convenient extraction. The functions perform logging while being called
 and extracting data.
lintian 2.66.0~bpo10+1 check for python3-nanoget_1.12.1-1_all.deb (click to toggle)
contents of python3-nanoget_1.12.1-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2020-04-25 06:38 ./
drwxr-xr-x root/root         0 2020-04-25 06:38 ./usr/
drwxr-xr-x root/root         0 2020-04-25 06:38 ./usr/lib/
drwxr-xr-x root/root         0 2020-04-25 06:38 ./usr/lib/python3/
drwxr-xr-x root/root         0 2020-04-25 06:38 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2020-04-25 06:38 ./usr/lib/python3/dist-packages/nanoget/
-rw-r--r-- root/root        56 2019-01-29 10:18 ./usr/lib/python3/dist-packages/nanoget/__init__.py
-rw-r--r-- root/root     17314 2020-03-02 08:04 ./usr/lib/python3/dist-packages/nanoget/extraction_functions.py
-rw-r--r-- root/root      6289 2019-12-03 08:35 ./usr/lib/python3/dist-packages/nanoget/nanoget.py
-rw-r--r-- root/root      1320 2019-08-27 11:28 ./usr/lib/python3/dist-packages/nanoget/utils.py
-rw-r--r-- root/root        23 2020-03-02 08:04 ./usr/lib/python3/dist-packages/nanoget/version.py
drwxr-xr-x root/root         0 2020-04-25 06:38 ./usr/lib/python3/dist-packages/nanoget-1.12.1.egg-info/
-rw-r--r-- root/root      2456 2020-04-25 06:38 ./usr/lib/python3/dist-packages/nanoget-1.12.1.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2020-04-25 06:38 ./usr/lib/python3/dist-packages/nanoget-1.12.1.egg-info/dependency_links.txt
-rw-r--r-- root/root         0 2020-04-25 06:38 ./usr/lib/python3/dist-packages/nanoget-1.12.1.egg-info/requires.txt
-rw-r--r-- root/root        16 2020-04-25 06:38 ./usr/lib/python3/dist-packages/nanoget-1.12.1.egg-info/top_level.txt
drwxr-xr-x root/root         0 2020-04-25 06:38 ./usr/share/
drwxr-xr-x root/root         0 2020-04-25 06:38 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-04-25 06:38 ./usr/share/doc/python3-nanoget/
-rw-r--r-- root/root       159 2020-04-25 06:38 ./usr/share/doc/python3-nanoget/changelog.Debian.gz
-rw-r--r-- root/root      1044 2020-04-25 06:38 ./usr/share/doc/python3-nanoget/copyright
control file for python3-nanoget-examples_1.12.1-1_all.deb (click to toggle)
Package:python3-nanoget-examples
Source:python-nanoget
Version:1.12.1-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:25565
Enhances:python3-nanoget
Section:python
Priority:optional
Homepage:https://github.com/wdecoster/nanoget
Description:
example data for python3-nanoget (dealing with Oxford Nanopore data)
 The Python3 module nanoget provides functions to extract useful metrics
 from Oxford Nanopore sequencing reads and alignments.
 .
 Data can be presented in the following formats, using the following functions:
 .
  * sorted bam file process_bam(bamfile, threads)
  * standard fastq file process_fastq_plain(fastqfile, 'threads')
  * fastq file with metadata from MinKNOW or Albacore
    process_fastq_rich(fastqfile)
  * sequencing_summary file generated by Albacore
    process_summary(sequencing_summary.txt, 'readtype')
 .
 Fastq files can be compressed using gzip, bzip2 or bgzip. The data is
 returned as a pandas DataFrame with standardized headernames for
 convenient extraction. The functions perform logging while being called
 and extracting data.
 .
 This package just contains an example script and the data to run the example.
lintian 2.66.0~bpo10+1 check for python3-nanoget-examples_1.12.1-1_all.deb (click to toggle)
contents of python3-nanoget-examples_1.12.1-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2020-04-25 06:38 ./
drwxr-xr-x root/root         0 2020-04-25 06:38 ./usr/
drwxr-xr-x root/root         0 2020-04-25 06:38 ./usr/share/
drwxr-xr-x root/root         0 2020-04-25 06:38 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-04-25 06:38 ./usr/share/doc/python3-nanoget/
drwxr-xr-x root/root         0 2020-04-25 06:38 ./usr/share/doc/python3-nanoget/examples/
drwxr-xr-x root/root         0 2020-04-25 06:38 ./usr/share/doc/python3-nanoget/examples/nanotest/
-rw-r--r-- root/root       931 2020-04-25 06:38 ./usr/share/doc/python3-nanoget/examples/nanotest/README.md
-rw-r--r-- root/root      2412 2020-04-25 06:38 ./usr/share/doc/python3-nanoget/examples/nanotest/alignment.bam.bai_orig.gz
-rw-r--r-- root/root  15377501 2020-04-25 06:38 ./usr/share/doc/python3-nanoget/examples/nanotest/alignment.bam.gz
-rw-r--r-- root/root   2532953 2020-04-25 06:38 ./usr/share/doc/python3-nanoget/examples/nanotest/reads.fa.gz
-rw-r--r-- root/root   8224328 2020-04-25 06:38 ./usr/share/doc/python3-nanoget/examples/nanotest/reads.fastq.gz
-rw-r--r-- root/root     24369 2020-04-25 06:38 ./usr/share/doc/python3-nanoget/examples/nanotest/sequencing_summary.txt.gz
-rw-r--r-- root/root       537 2019-03-15 13:35 ./usr/share/doc/python3-nanoget/examples/test.py
drwxr-xr-x root/root         0 2020-04-25 06:38 ./usr/share/doc/python3-nanoget-examples/
-rw-r--r-- root/root       159 2020-04-25 06:38 ./usr/share/doc/python3-nanoget-examples/changelog.Debian.gz
-rw-r--r-- root/root      1044 2020-04-25 06:38 ./usr/share/doc/python3-nanoget-examples/copyright

Timestamp: 25.04.2020 / 08:11:16 (UTC)