Debian NEW package overview for python-modelcif
| python-modelcif_1.5-1_amd64.changes (click to toggle) | |
|---|---|
| Format: | 1.8 |
| Date: | Fri, 03 Oct 2025 16:07:11 +0100 |
| Source: | python-modelcif |
| Binary: | python3-modelcif |
| Architecture: | source all |
| Version: | 1.5-1 |
| Distribution: | unstable |
| Urgency: | medium |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Changed-By: | Steffen Moeller <moeller@debian.org> |
| Description: | python3-modelcif - handles mmCIF and BinaryCIF files with ModelCIF extension |
| Closes: | 1109466 |
| Changes: | python-modelcif (1.5-1) unstable; urgency=medium * Initial release. (Closes: #1109466) [ Thorsten Alteholz ] * d/copyright: docs/* directly assigned to Ben |
| Files: | 3e130f85392a2e62941f7fbb4cb9589f 2079 science optional python-modelcif_1.5-1.dsc a29d0b62985a66a8ed73148cea2a8efd 92318 science optional python-modelcif_1.5.orig.tar.gz 802d8bec5e6d9a97d8bdc7a72aeed39b 3788 science optional python-modelcif_1.5-1.debian.tar.xz 0c4c46f432fda06e22f92f6fc7f505fd 7154 science optional python-modelcif_1.5-1_amd64.buildinfo f64336f0c8e4a8f525c007012cef0c5b 40580 python optional python3-modelcif_1.5-1_all.deb |
| python-modelcif_1.5-1.dsc (click to toggle) | |
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| Format: | 3.0 (quilt) |
| Source: | python-modelcif |
| Binary: | python3-modelcif |
| Architecture: | all |
| Version: | 1.5-1 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Uploaders: | Steffen Moeller <moeller@debian.org>, Ben Webb <ben@salilab.org>, |
| Homepage: | https://github.com/ihmwg/python-modelcif |
| Standards-Version: | 4.7.2 |
| Vcs-Browser: | https://salsa.debian.org/med-team/python-modelcif |
| Vcs-Git: | https://salsa.debian.org/med-team/python-modelcif.git |
| Build-Depends: | debhelper-compat (=13), dh-sequence-python3, python3-setuptools, python3-all, python3-ihm |
| Package-List: | python3-modelcif deb python optional arch=all |
| Files: | a29d0b62985a66a8ed73148cea2a8efd 92318 python-modelcif_1.5.orig.tar.gz 802d8bec5e6d9a97d8bdc7a72aeed39b 3788 python-modelcif_1.5-1.debian.tar.xz |
| control file for python3-modelcif_1.5-1_all.deb (click to toggle) | |
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| Package: | python3-modelcif |
| Source: | python-modelcif |
| Version: | 1.5-1 |
| Architecture: | all |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Installed-Size: | 204 |
| Depends: | python3-ihm, python3:any |
| Section: | python |
| Priority: | optional |
| Homepage: | https://github.com/ihmwg/python-modelcif |
| Description: | handles mmCIF and BinaryCIF files with ModelCIF extension
The macromolecular Crystallographic Information File format is a standard
for the representation and description of large molecular structures like
proteins and/or nucleic acids.
.
This package provides a mechanism to describe the generation of a
theoretical model (for example, via comparative or homology model)
a set of Python objects. This includes, if applicable
* the templates(s) used for the modeling;
* the alignment between the template(s) and target sequence;
* the protocol used to generate models, such as template search,
modeling, and model selection;
* the actual coordinates of output models;
* grouping of multiple models;
* quality scores for models and/or alignments.
.
Once created, this set of Python objects can be written to an
mmCIF file that is compliant with the ModelCIF extension to the
PDBx/mmCIF dictionary, suitable for deposition in a repository such as
ModelArchive. The files can be viewed in any regular PDBx mmCIF viewer,
such as UCSF ChimeraX (although most viewers to date will only show
the model coordinates, not the ModelCIF-specific metadata).
.
This package leverages functionality provided by the python-ihm
package, which functions similarly, building a Python hierarchy
and then reading/writing mmCIF files. (However, python-ihm is used
for integrative models, and reads or writes files compliant with the
integrative/hybrid modeling extension dictionary.) In particular, many
python-ihm classes and modules are used in this library, for example
the ihm.Grant and ihm.Citation classes for handling grant or citation
information, or the ihm.dictionary module for validating files against
the mmCIF dictionary itself. |
| contents of python3-modelcif_1.5-1_all.deb (click to toggle) | |
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drwxr-xr-x root/root 0 2025-10-03 15:07 ./ drwxr-xr-x root/root 0 2025-10-03 15:07 ./usr/ drwxr-xr-x root/root 0 2025-10-03 15:07 ./usr/lib/ drwxr-xr-x root/root 0 2025-10-03 15:07 ./usr/lib/python3/ drwxr-xr-x root/root 0 2025-10-03 15:07 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif/ -rw-r--r-- root/root 32139 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif/__init__.py -rw-r--r-- root/root 6208 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif/alignment.py -rw-r--r-- root/root 5145 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif/associated.py -rw-r--r-- root/root 1607 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif/data.py -rw-r--r-- root/root 2426 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif/descriptor.py -rw-r--r-- root/root 46957 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif/dumper.py -rw-r--r-- root/root 5141 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif/model.py -rw-r--r-- root/root 3300 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif/protocol.py -rw-r--r-- root/root 8995 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif/qa_metric.py -rw-r--r-- root/root 49128 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif/reader.py -rw-r--r-- root/root 7311 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif/reference.py -rw-r--r-- root/root 822 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif/test.py drwxr-xr-x root/root 0 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif/util/ -rw-r--r-- root/root 5 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif/util/__init__.py -rw-r--r-- root/root 3771 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif/util/make_mmcif.py drwxr-xr-x root/root 0 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif-1.5.egg-info/ -rw-r--r-- root/root 3366 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif-1.5.egg-info/PKG-INFO -rw-r--r-- root/root 1 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif-1.5.egg-info/dependency_links.txt -rw-r--r-- root/root 0 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif-1.5.egg-info/requires.txt -rw-r--r-- root/root 9 2025-10-03 15:07 ./usr/lib/python3/dist-packages/modelcif-1.5.egg-info/top_level.txt drwxr-xr-x root/root 0 2025-10-03 15:07 ./usr/share/ drwxr-xr-x root/root 0 2025-10-03 15:07 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-10-03 15:07 ./usr/share/doc/python3-modelcif/ -rw-r--r-- root/root 218 2025-10-03 15:07 ./usr/share/doc/python3-modelcif/changelog.Debian.gz -rw-r--r-- root/root 3325 2025-10-03 15:07 ./usr/share/doc/python3-modelcif/changelog.gz -rw-r--r-- root/root 1679 2025-10-03 15:07 ./usr/share/doc/python3-modelcif/copyright | |
| copyright of python3-modelcif_1.5-1_all.deb (click to toggle) | |
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Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Source: https://github.com/ihmwg/python-modelcif Upstream-Name: Python-ModelCIF Upstream-Contact: Ben Webb <ben@salilab.org> Files: * Copyright: 2018-2025 IHM Working Group License: Expat Comment: Ben Webb is listed as main author in setup.py, the license file assigned the copyright to the IHM Working Group. Files: docs/* Copyright: 2021-2025 Ben Webb <ben@salilab.org> License: Expat Comment: Ben Webb is listed as copyright holder in docs/conf.py. Files: debian/* Copyright: 2025 Steffen Moeller <moeller@debian.org> License: Expat License: Expat Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: . The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. . THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. | |
Timestamp: 03.10.2025 / 16:02:34 (UTC)