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plasmidseeker_1.0+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Fri, 26 Oct 2018 20:07:34 +0200
Source:plasmidseeker
Binary:plasmidseeker
Architecture:source amd64
Version:1.0+dfsg-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
plasmidseeker - identification of known plasmids from whole-genome sequencing rea
Closes:911964
Changes:
plasmidseeker (1.0+dfsg-1) unstable; urgency=medium

  * Initial release (Closes: #911964)
Files:
2f0daf18ab30212e28a22b5600b17ab7 2013 science optional plasmidseeker_1.0+dfsg-1.dsc
9ffa88aa2d7d834cf1fda1f110230311 22396 science optional plasmidseeker_1.0+dfsg.orig.tar.xz
66d16813f6aa0765091604f965f5fa29 4560 science optional plasmidseeker_1.0+dfsg-1.debian.tar.xz
1df0d219758a6e32174d5cc812041bd9 5582 science optional plasmidseeker_1.0+dfsg-1_amd64.buildinfo
14f205d6327cf5baf847822fd790a70a 24444 science optional plasmidseeker_1.0+dfsg-1_amd64.deb
plasmidseeker_1.0+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:plasmidseeker
Binary:plasmidseeker
Architecture:any
Version:1.0+dfsg-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Andreas Tille <tille@debian.org>
Homepage:https://github.com/bioinfo-ut/PlasmidSeeker
Standards-Version:4.2.1
Vcs-Browser:https://salsa.debian.org/med-team/plasmidseeker
Vcs-Git:https://salsa.debian.org/med-team/plasmidseeker.git
Build-Depends:debhelper (>=11~)
Package-List:plasmidseeker deb science optional arch=any
Files:
9ffa88aa2d7d834cf1fda1f110230311 22396 plasmidseeker_1.0+dfsg.orig.tar.xz
66d16813f6aa0765091604f965f5fa29 4560 plasmidseeker_1.0+dfsg-1.debian.tar.xz
lintian 2.5.110~bpo9+1 check for plasmidseeker_1.0+dfsg-1.dsc (click to toggle)
W: plasmidseeker source: debian-watch-file-should-mangle-version line 4
README.source for plasmidseeker_1.0+dfsg-1.dsc (click to toggle)
No README.source in this package
control file for plasmidseeker_1.0+dfsg-1_amd64.deb (click to toggle)
Package:plasmidseeker
Version:1.0+dfsg-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:90
Depends:genometester (>=4.0+git20180508.a9c14a6+dfsg)
Section:science
Priority:optional
Homepage:https://github.com/bioinfo-ut/PlasmidSeeker
Description:
identification of known plasmids from whole-genome sequencing reads
 PlasmidSeeker is a k-mer based program for the identification of known
 plasmids from bacterial whole genome sequencing reads.
 .
 PlasmidSeeker that enables the detection of plasmids from bacterial WGS
 data without read assembly. The PlasmidSeeker algorithm is based on
 k-mers and uses k-mer abundance to distinguish between plasmid and
 bacterial sequences. The performance of PlasmidSeeker was tested on a set
 of simulated and real bacterial WGS samples, resulting in 100%
 sensitivity and 99.98% specificity.
lintian 2.5.110~bpo9+1 check for plasmidseeker_1.0+dfsg-1_amd64.deb (click to toggle)
contents of plasmidseeker_1.0+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-10-26 18:07 ./
drwxr-xr-x root/root         0 2018-10-26 18:07 ./usr/
drwxr-xr-x root/root         0 2018-10-26 18:07 ./usr/bin/
drwxr-xr-x root/root         0 2018-10-26 18:07 ./usr/share/
drwxr-xr-x root/root         0 2018-10-26 18:07 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-10-26 18:07 ./usr/share/doc/plasmidseeker/
-rw-r--r-- root/root      3218 2018-05-02 14:19 ./usr/share/doc/plasmidseeker/README.md
-rw-r--r-- root/root       162 2018-10-26 18:07 ./usr/share/doc/plasmidseeker/changelog.Debian.gz
-rw-r--r-- root/root      1841 2018-10-26 18:07 ./usr/share/doc/plasmidseeker/copyright
drwxr-xr-x root/root         0 2018-10-26 18:07 ./usr/share/doc/plasmidseeker/examples/
-rw-r--r-- root/root      1268 2018-10-26 18:07 ./usr/share/doc/plasmidseeker/examples/plasmidseeker_ecoli_test.sh
drwxr-xr-x root/root         0 2018-10-26 18:07 ./usr/share/man/
drwxr-xr-x root/root         0 2018-10-26 18:07 ./usr/share/man/man1/
-rw-r--r-- root/root       653 2018-10-26 18:07 ./usr/share/man/man1/plasmidseeker.1.gz
drwxr-xr-x root/root         0 2018-10-26 18:07 ./usr/share/plasmidseeker/
-rw-r--r-- root/root      6919 2018-05-02 14:19 ./usr/share/plasmidseeker/E_coli_wgs.txt
-rw-r--r-- root/root       249 2018-05-02 14:19 ./usr/share/plasmidseeker/P_aeruginosa_plasmid.txt
-rw-r--r-- root/root      3270 2018-05-02 14:19 ./usr/share/plasmidseeker/database_builder.pl
-rw-r--r-- root/root     26281 2018-05-02 14:19 ./usr/share/plasmidseeker/errormodel-80bp.mconf
-rw-r--r-- root/root       839 2018-05-02 14:19 ./usr/share/plasmidseeker/make_mutations.pl
-rwxr-xr-x root/root     16184 2018-10-26 18:07 ./usr/share/plasmidseeker/plasmidseeker.pl
-rw-r--r-- root/root     13090 2018-05-02 14:19 ./usr/share/plasmidseeker/testfunction.R
lrwxrwxrwx root/root         0 2018-10-26 18:07 ./usr/bin/plasmidseeker -> ../share/plasmidseeker/plasmidseeker.pl

Timestamp: 26.10.2018 / 19:06:10 (UTC)