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pizzly_0.37.3+ds-2_amd64.changes (click to toggle)
Format:1.8
Date:Thu, 20 Feb 2020 12:42:04 +0100
Source:pizzly
Binary:pizzly pizzly-dbgsym
Architecture:source amd64
Version:0.37.3+ds-2
Distribution:unstable
Urgency:medium
Maintainer:Steffen Moeller <moeller@debian.org>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
pizzly     - Identifies gene fusions in RNA sequencing data
Closes:929939
Changes:
pizzly (0.37.3+ds-2) unstable; urgency=medium

  * Reacted to 2nd iteration of FTP masters' comments
    and extended copyright info for files imported from
    Ensembl (Closes: #929939)
  * Bumped standard to 4.5.0
Files:
3e35573656438d51336685643c5756d4 1900 science optional pizzly_0.37.3+ds-2.dsc
cba5c09c8f5493378b068821029df3a5 262304 science optional pizzly_0.37.3+ds.orig.tar.xz
712adbd7faa49b129e5e2f75b6d77c57 3888 science optional pizzly_0.37.3+ds-2.debian.tar.xz
8a1457137f89c53cb106734be09817b2 4108804 debug optional pizzly-dbgsym_0.37.3+ds-2_amd64.deb
f90add2b68a2555d9647bd8e1ae3f255 7793 science optional pizzly_0.37.3+ds-2_amd64.buildinfo
bdd799a8149782dda9e7100c1af1e450 299584 science optional pizzly_0.37.3+ds-2_amd64.deb
pizzly_0.37.3+ds-2.dsc (click to toggle)
Format:3.0 (quilt)
Source:pizzly
Binary:pizzly
Architecture:any
Version:0.37.3+ds-2
Maintainer:Steffen Moeller <moeller@debian.org>
Homepage:https://github.com/pmelsted/pizzly
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/debian/pizzly
Vcs-Git:https://salsa.debian.org/debian/pizzly.git
Build-Depends:debhelper (>=11), libseqan2-dev, help2man, cmake, zlib1g-dev
Package-List:pizzly deb science optional arch=any
Files:
cba5c09c8f5493378b068821029df3a5 262304 pizzly_0.37.3+ds.orig.tar.xz
712adbd7faa49b129e5e2f75b6d77c57 3888 pizzly_0.37.3+ds-2.debian.tar.xz
lintian 2.52.0~bpo9+1 check for pizzly_0.37.3+ds-2.dsc (click to toggle)
W: pizzly source: debian-watch-file-should-mangle-version opts="repack,oversionmangle=s/$/+ds/,compression=xz,filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%pizzly-$1.tar.gz%" https://github.com/pmelsted/pizzly/tags (?:.*?/)?v?(\d[\d.]*)\.tar\.gz debian uupdate
README.source for pizzly_0.37.3+ds-2.dsc (click to toggle)
The seqan directory was removed from the source tree,
substituted with a dependency to the libseqan2-dev package.
control file for pizzly_0.37.3+ds-2_amd64.deb (click to toggle)
Package:pizzly
Version:0.37.3+ds-2
Architecture:amd64
Maintainer:Steffen Moeller <moeller@debian.org>
Installed-Size:924
Depends:libc6 (>=2.29), libgcc-s1 (>=3.0), libstdc++6 (>=9), zlib1g (>=1:1.1.4), python3, kallisto
Recommends:python3-h5py
Section:science
Priority:optional
Homepage:https://github.com/pmelsted/pizzly
Description:
Identifies gene fusions in RNA sequencing data
 For the interpretation of the transcriptome (the abundance
 and sequence of RNA) of tomour cells one is particularly
 interested in transcripts that cannot be mapped to single
 genes but that are seen to be fused as parts from two genes.
 Likely eplanations are chromosomal translocations.
 .
 Pizzly can identify novel such peculiarities, building on
 interpretations on variable splicing by the tool kallisto.
 Both tools are elements of the bcbio workflow.
lintian 2.52.0~bpo9+1 check for pizzly_0.37.3+ds-2_amd64.deb (click to toggle)
W: pizzly: binary-without-manpage usr/bin/flatten_json.py
W: pizzly: binary-without-manpage usr/bin/get_fragment_length.py
W: pizzly: binary-without-manpage usr/bin/pizzly_flatten_json.py
W: pizzly: script-with-language-extension usr/bin/flatten_json.py
W: pizzly: script-with-language-extension usr/bin/get_fragment_length.py
contents of pizzly_0.37.3+ds-2_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-02-20 11:42 ./
drwxr-xr-x root/root         0 2020-02-20 11:42 ./usr/
drwxr-xr-x root/root         0 2020-02-20 11:42 ./usr/bin/
-rwxr-xr-x root/root      1491 2020-02-20 11:42 ./usr/bin/flatten_json.py
-rwxr-xr-x root/root       908 2020-02-20 11:42 ./usr/bin/get_fragment_length.py
-rwxr-xr-x root/root    920968 2020-02-20 11:42 ./usr/bin/pizzly
drwxr-xr-x root/root         0 2020-02-20 11:42 ./usr/share/
drwxr-xr-x root/root         0 2020-02-20 11:42 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-02-20 11:42 ./usr/share/doc/pizzly/
-rw-r--r-- root/root       595 2019-11-27 22:43 ./usr/share/doc/pizzly/README.Debian
-rw-r--r-- root/root      4027 2019-06-03 17:23 ./usr/share/doc/pizzly/README.md
-rw-r--r-- root/root       348 2020-02-20 11:42 ./usr/share/doc/pizzly/changelog.Debian.gz
-rw-r--r-- root/root      3131 2020-02-20 11:26 ./usr/share/doc/pizzly/copyright
drwxr-xr-x root/root         0 2020-02-20 11:42 ./usr/share/man/
drwxr-xr-x root/root         0 2020-02-20 11:42 ./usr/share/man/man1/
-rw-r--r-- root/root       702 2020-02-20 11:42 ./usr/share/man/man1/pizzly.1.gz
lrwxrwxrwx root/root         0 2020-02-20 11:42 ./usr/bin/pizzly_flatten_json.py -> flatten_json.py
control file for pizzly-dbgsym_0.37.3+ds-2_amd64.deb (click to toggle)
Package:pizzly-dbgsym
Source:pizzly
Version:0.37.3+ds-2
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Steffen Moeller <moeller@debian.org>
Installed-Size:4216
Depends:pizzly (=0.37.3+ds-2)
Section:debug
Priority:optional
Description:
debug symbols for pizzly
Build-Ids:72a0eaa108551c8254b94d38f71a6ba19925d9db
lintian 2.52.0~bpo9+1 check for pizzly-dbgsym_0.37.3+ds-2_amd64.deb (click to toggle)
contents of pizzly-dbgsym_0.37.3+ds-2_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-02-20 11:42 ./
drwxr-xr-x root/root         0 2020-02-20 11:42 ./usr/
drwxr-xr-x root/root         0 2020-02-20 11:42 ./usr/lib/
drwxr-xr-x root/root         0 2020-02-20 11:42 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-02-20 11:42 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-02-20 11:42 ./usr/lib/debug/.build-id/72/
-rw-r--r-- root/root   4306744 2020-02-20 11:42 ./usr/lib/debug/.build-id/72/a0eaa108551c8254b94d38f71a6ba19925d9db.debug
drwxr-xr-x root/root         0 2020-02-20 11:42 ./usr/share/
drwxr-xr-x root/root         0 2020-02-20 11:42 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-02-20 11:42 ./usr/share/doc/pizzly-dbgsym -> pizzly

Timestamp: 20.02.2020 / 13:01:22 (UTC)