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pizzly_0.37.3+ds-1_amd64.changes (click to toggle)
Format:1.8
Date:Wed, 27 Nov 2019 23:34:21 +0100
Source:pizzly
Binary:pizzly pizzly-dbgsym
Architecture:source amd64
Version:0.37.3+ds-1
Distribution:unstable
Urgency:medium
Maintainer:Steffen Moeller <moeller@debian.org>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
pizzly     - Identifies gene fusions in RNA sequencing data
Closes:929939
Changes:
pizzly (0.37.3+ds-1) unstable; urgency=medium

  * Reacted to FTP masters' comments (Closes: #929939)
  * Added ref to conda
  * Bumped standard to 4.4.1
Files:
3d06b792fea9b3ae1e3f85dc90961d3e 1900 science optional pizzly_0.37.3+ds-1.dsc
cba5c09c8f5493378b068821029df3a5 262304 science optional pizzly_0.37.3+ds.orig.tar.xz
f12c5e83d53b68f82062cf8f78ad45b2 3256 science optional pizzly_0.37.3+ds-1.debian.tar.xz
9321f87568dd1b6ee946763f80a0d045 4109628 debug optional pizzly-dbgsym_0.37.3+ds-1_amd64.deb
5e56013bdbe277a9d0bd588de39bed26 7189 science optional pizzly_0.37.3+ds-1_amd64.buildinfo
f778ccf9c320bacc0f7ecdfd6f45e640 298872 science optional pizzly_0.37.3+ds-1_amd64.deb
pizzly_0.37.3+ds-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:pizzly
Binary:pizzly
Architecture:any
Version:0.37.3+ds-1
Maintainer:Steffen Moeller <moeller@debian.org>
Homepage:https://github.com/pmelsted/pizzly
Standards-Version:4.4.1
Vcs-Browser:https://salsa.debian.org/debian/pizzly
Vcs-Git:https://salsa.debian.org/debian/pizzly.git
Build-Depends:debhelper (>=11), libseqan2-dev, help2man, cmake, zlib1g-dev
Package-List:pizzly deb science optional arch=any
Files:
cba5c09c8f5493378b068821029df3a5 262304 pizzly_0.37.3+ds.orig.tar.xz
f12c5e83d53b68f82062cf8f78ad45b2 3256 pizzly_0.37.3+ds-1.debian.tar.xz
lintian 2.36.0~bpo9+1 check for pizzly_0.37.3+ds-1.dsc (click to toggle)
W: pizzly source: debian-watch-file-should-mangle-version line 4
README.source for pizzly_0.37.3+ds-1.dsc (click to toggle)
The seqan directory was removed from the source tree,
substituted with a dependency to the libseqan2-dev package.
control file for pizzly_0.37.3+ds-1_amd64.deb (click to toggle)
Package:pizzly
Version:0.37.3+ds-1
Architecture:amd64
Maintainer:Steffen Moeller <moeller@debian.org>
Installed-Size:922
Depends:libc6 (>=2.29), libgcc1 (>=1:3.0), libstdc++6 (>=9), zlib1g (>=1:1.1.4), python3, kallisto
Section:science
Priority:optional
Homepage:https://github.com/pmelsted/pizzly
Description:
Identifies gene fusions in RNA sequencing data
 For the interpretation of the transcriptome (the abundance
 and sequence of RNA) of tomour cells one is particularly
 interested in transcripts that cannot be mapped to single
 genes but that are seen to be fused as parts from two genes.
 Likely eplanations are chromosomal translocations.
 .
 Pizzly can identify novel such peculiarities, building on
 interpretations on variable splicing by the tool kallisto.
 Both tools are elements of the bcbio workflow.
lintian 2.36.0~bpo9+1 check for pizzly_0.37.3+ds-1_amd64.deb (click to toggle)
W: pizzly: script-with-language-extension usr/bin/flatten_json.py
W: pizzly: script-with-language-extension usr/bin/get_fragment_length.py
W: pizzly: binary-without-manpage usr/bin/flatten_json.py
W: pizzly: binary-without-manpage usr/bin/get_fragment_length.py
W: pizzly: binary-without-manpage usr/bin/pizzly_flatten_json.py
contents of pizzly_0.37.3+ds-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2019-11-27 22:34 ./
drwxr-xr-x root/root         0 2019-11-27 22:34 ./usr/
drwxr-xr-x root/root         0 2019-11-27 22:34 ./usr/bin/
-rwxr-xr-x root/root      1491 2019-11-27 22:34 ./usr/bin/flatten_json.py
-rwxr-xr-x root/root       908 2019-11-27 22:34 ./usr/bin/get_fragment_length.py
-rwxr-xr-x root/root    920968 2019-11-27 22:34 ./usr/bin/pizzly
drwxr-xr-x root/root         0 2019-11-27 22:34 ./usr/share/
drwxr-xr-x root/root         0 2019-11-27 22:34 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-11-27 22:34 ./usr/share/doc/pizzly/
-rw-r--r-- root/root       595 2019-11-27 22:34 ./usr/share/doc/pizzly/README.Debian
-rw-r--r-- root/root      4027 2019-06-03 17:23 ./usr/share/doc/pizzly/README.md
-rw-r--r-- root/root       264 2019-11-27 22:34 ./usr/share/doc/pizzly/changelog.Debian.gz
-rw-r--r-- root/root      1903 2019-11-27 22:31 ./usr/share/doc/pizzly/copyright
drwxr-xr-x root/root         0 2019-11-27 22:34 ./usr/share/man/
drwxr-xr-x root/root         0 2019-11-27 22:34 ./usr/share/man/man1/
-rw-r--r-- root/root       701 2019-11-27 22:34 ./usr/share/man/man1/pizzly.1.gz
lrwxrwxrwx root/root         0 2019-11-27 22:34 ./usr/bin/pizzly_flatten_json.py -> flatten_json.py
control file for pizzly-dbgsym_0.37.3+ds-1_amd64.deb (click to toggle)
Package:pizzly-dbgsym
Source:pizzly
Version:0.37.3+ds-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Steffen Moeller <moeller@debian.org>
Installed-Size:4216
Depends:pizzly (=0.37.3+ds-1)
Section:debug
Priority:optional
Description:
debug symbols for pizzly
Build-Ids:66f2ad469e63e7780da99151fec9cb3349d395b7
lintian 2.36.0~bpo9+1 check for pizzly-dbgsym_0.37.3+ds-1_amd64.deb (click to toggle)
contents of pizzly-dbgsym_0.37.3+ds-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2019-11-27 22:34 ./
drwxr-xr-x root/root         0 2019-11-27 22:34 ./usr/
drwxr-xr-x root/root         0 2019-11-27 22:34 ./usr/lib/
drwxr-xr-x root/root         0 2019-11-27 22:34 ./usr/lib/debug/
drwxr-xr-x root/root         0 2019-11-27 22:34 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2019-11-27 22:34 ./usr/lib/debug/.build-id/66/
-rw-r--r-- root/root   4306560 2019-11-27 22:34 ./usr/lib/debug/.build-id/66/f2ad469e63e7780da99151fec9cb3349d395b7.debug
drwxr-xr-x root/root         0 2019-11-27 22:34 ./usr/share/
drwxr-xr-x root/root         0 2019-11-27 22:34 ./usr/share/doc/
lrwxrwxrwx root/root         0 2019-11-27 22:34 ./usr/share/doc/pizzly-dbgsym -> pizzly

Timestamp: 28.11.2019 / 00:01:19 (UTC)