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phast_1.4+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Tue, 12 Sep 2017 10:11:38 +0200
Source:phast
Binary:phast
Architecture:source amd64
Version:1.4+dfsg-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
phast      - phylogenetic analysis with space/time models
Closes:875555
Changes:
phast (1.4+dfsg-1) unstable; urgency=medium

  * Initial release (Closes: #875555)
Files:
c167922efedf2babc0d2efc8cb03b533 1968 science optional phast_1.4+dfsg-1.dsc
26afa32046a88663da46f82a6db7a46f 1808112 science optional phast_1.4+dfsg.orig.tar.xz
0a1e68850089cf5ffee43ae0b7e6d360 51416 science optional phast_1.4+dfsg-1.debian.tar.xz
0b97cc4fed9542e1b39431ed57577318 27729670 debug optional phast-dbgsym_1.4+dfsg-1_amd64.deb
cff995bed84c9193f6ac9892469c0cd8 5924 science optional phast_1.4+dfsg-1_amd64.buildinfo
6cf8a763d858f1d4eef04dc258c7aa37 2252382 science optional phast_1.4+dfsg-1_amd64.deb
phast_1.4+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:phast
Binary:phast
Architecture:any
Version:1.4+dfsg-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Andreas Tille <tille@debian.org>
Homepage:http://compgen.cshl/edu/phast
Standards-Version:4.1.0
Vcs-Browser:https://anonscm.debian.org/cgit/debian-med/phast.git
Vcs-Git:https://anonscm.debian.org/git/debian-med/phast.git
Build-Depends:debhelper (>=10), liblapack-dev, libblas-dev, libtmglib-dev, libpcre3-dev, help2man
Package-List:phast deb science optional arch=any
Files:
26afa32046a88663da46f82a6db7a46f 1808112 phast_1.4+dfsg.orig.tar.xz
0a1e68850089cf5ffee43ae0b7e6d360 51416 phast_1.4+dfsg-1.debian.tar.xz
lintian check for phast_1.4+dfsg-1.dsc (click to toggle)
W: phast source: newer-standards-version 4.1.0 (current is 3.9.8)
README.source for phast_1.4+dfsg-1.dsc (click to toggle)
No README.source in this package
control file for phast_1.4+dfsg-1_amd64.deb (click to toggle)
Package:phast
Version:1.4+dfsg-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:29066
Depends:libblas3 | libblas.so.3, libc6 (>=2.23), liblapack3 | liblapack.so.3, libpcre3, libtmglib3
Section:science
Priority:optional
Homepage:http://compgen.cshl/edu/phast
Description:
phylogenetic analysis with space/time models
 PHAST is a software package for comparative and evolutionary genomics.
 It consists of about half a dozen major programs, plus more than a dozen
 utilities for manipulating sequence alignments, phylogenetic trees, and
 genomic annotations. For the most part, PHAST focuses on two kinds of
 applications: the identification of novel functional elements, including
 protein-coding exons and evolutionarily conserved sequences; and
 statistical phylogenetic modeling, including estimation of model
 parameters, detection of signatures of selection, and reconstruction of
 ancestral sequences.
 .
 PHAST does not support phylogeny reconstruction or sequence alignment,
 and it is designed for use with DNA sequences only (see Comparison).
lintian check for phast_1.4+dfsg-1_amd64.deb (click to toggle)
W: phast: manpage-has-errors-from-man usr/share/man/man1/exoniphy.1.gz 160: warning [p 3, 3.5i]: can't break line
W: phast: manpage-has-errors-from-man usr/share/man/man1/phyloFit.1.gz 109: warning [p 2, 7.2i]: can't break line
W: phast: manpage-has-errors-from-man usr/share/man/man1/prequel.1.gz 40: warning [p 1, 7.0i]: cannot adjust line
contents of phast_1.4+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2017-09-12 08:11 ./
drwxr-xr-x root/root         0 2017-09-12 08:11 ./usr/
drwxr-xr-x root/root         0 2017-09-12 08:11 ./usr/bin/
-rwxr-xr-x root/root    632936 2017-09-12 08:11 ./usr/bin/all_dists
-rwxr-xr-x root/root    667368 2017-09-12 08:11 ./usr/bin/base_evolve
-rwxr-xr-x root/root    628840 2017-09-12 08:11 ./usr/bin/chooseLines
-rwxr-xr-x root/root    664472 2017-09-12 08:11 ./usr/bin/clean_genes
-rwxr-xr-x root/root    634624 2017-09-12 08:11 ./usr/bin/consEntropy
-rwxr-xr-x root/root    628840 2017-09-12 08:11 ./usr/bin/convert_coords
-rwxr-xr-x root/root    653416 2017-09-12 08:11 ./usr/bin/display_rate_matrix
-rwxr-xr-x root/root    748384 2017-09-12 08:11 ./usr/bin/dless
-rwxr-xr-x root/root    798376 2017-09-12 08:11 ./usr/bin/dlessP
-rwxr-xr-x root/root    628840 2017-09-12 08:11 ./usr/bin/draw_tree
-rwxr-xr-x root/root    637032 2017-09-12 08:11 ./usr/bin/eval_predictions
-rwxr-xr-x root/root    721488 2017-09-12 08:11 ./usr/bin/exoniphy
-rwxr-xr-x root/root    677992 2017-09-12 08:11 ./usr/bin/hmm_train
-rwxr-xr-x root/root    677992 2017-09-12 08:11 ./usr/bin/hmm_tweak
-rwxr-xr-x root/root    673896 2017-09-12 08:11 ./usr/bin/hmm_view
-rwxr-xr-x root/root    659568 2017-09-12 08:11 ./usr/bin/indelFit
-rwxr-xr-x root/root    646904 2017-09-12 08:11 ./usr/bin/indelHistory
-rwxr-xr-x root/root    662296 2017-09-12 08:11 ./usr/bin/maf_parse
-rwxr-xr-x root/root    629888 2017-09-12 08:11 ./usr/bin/makeHKY
-rwxr-xr-x root/root    629240 2017-09-12 08:11 ./usr/bin/modFreqs
-rwxr-xr-x root/root    629904 2017-09-12 08:11 ./usr/bin/msa_diff
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-rwxr-xr-x root/root    654648 2017-09-12 08:11 ./usr/bin/msa_view
-rwxr-xr-x root/root    654688 2017-09-12 08:11 ./usr/bin/pbsDecode
-rwxr-xr-x root/root    654608 2017-09-12 08:11 ./usr/bin/pbsEncode
-rwxr-xr-x root/root    657592 2017-09-12 08:11 ./usr/bin/pbsScoreMatrix
-rwxr-xr-x root/root    659296 2017-09-12 08:11 ./usr/bin/pbsTrain
-rwxr-xr-x root/root      7112 2017-09-12 08:11 ./usr/bin/phast
-rwxr-xr-x root/root    774856 2017-09-12 08:11 ./usr/bin/phastBias
-rwxr-xr-x root/root    774640 2017-09-12 08:11 ./usr/bin/phastCons
-rwxr-xr-x root/root    690280 2017-09-12 08:11 ./usr/bin/phastMotif
-rwxr-xr-x root/root    680240 2017-09-12 08:11 ./usr/bin/phastOdds
-rwxr-xr-x root/root    677248 2017-09-12 08:11 ./usr/bin/phyloBoot
-rwxr-xr-x root/root    746696 2017-09-12 08:11 ./usr/bin/phyloFit
-rwxr-xr-x root/root    788352 2017-09-12 08:11 ./usr/bin/phyloP
-rwxr-xr-x root/root    665472 2017-09-12 08:11 ./usr/bin/prequel
-rwxr-xr-x root/root    633432 2017-09-12 08:11 ./usr/bin/refeature
-rwxr-xr-x root/root    628840 2017-09-12 08:11 ./usr/bin/stringiphy
-rwxr-xr-x root/root    638360 2017-09-12 08:11 ./usr/bin/treeGen
-rwxr-xr-x root/root    637688 2017-09-12 08:11 ./usr/bin/tree_doctor
drwxr-xr-x root/root         0 2017-09-12 08:11 ./usr/share/
drwxr-xr-x root/root         0 2017-09-12 08:11 ./usr/share/doc/
drwxr-xr-x root/root         0 2017-09-12 08:11 ./usr/share/doc/phast/
-rw-r--r-- root/root       154 2017-09-12 08:11 ./usr/share/doc/phast/changelog.Debian.gz
-rw-r--r-- root/root      1824 2017-09-12 08:11 ./usr/share/doc/phast/copyright
drwxr-xr-x root/root         0 2017-09-12 08:11 ./usr/share/man/
drwxr-xr-x root/root         0 2017-09-12 08:11 ./usr/share/man/man1/
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-rw-r--r-- root/root       291 2017-09-12 08:11 ./usr/share/man/man1/chooseLines.1.gz
-rw-r--r-- root/root      2334 2017-09-12 08:11 ./usr/share/man/man1/clean_genes.1.gz
-rw-r--r-- root/root       874 2017-09-12 08:11 ./usr/share/man/man1/consEntropy.1.gz
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drwxr-xr-x root/root         0 2017-09-12 08:11 ./usr/share/phast/
drwxr-xr-x root/root         0 2017-09-12 08:11 ./usr/share/phast/data/
drwxr-xr-x root/root         0 2017-09-12 08:11 ./usr/share/phast/data/exoniphy/
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control file for phast-dbgsym_1.4+dfsg-1_amd64.deb (click to toggle)
Package:phast-dbgsym
Source:phast
Version:1.4+dfsg-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:29793
Depends:phast (=1.4+dfsg-1)
Section:debug
Priority:optional
Description:
debug symbols for phast
Build-Ids:0081024b353b8c4aaffb7580a68e993793387519 0b3d9aa699e498bd3684be5ba4da1d1f6d567cb0 1bc2be4768b9a3f9409e4d8fb40fd4427bd828ed 23085bd465795c8bbae39b08638e85f9effcb4b0 2d5a875b8a3da86771bd1f35e63f5aa6b6819b7e 2e31451576492fde5f7a464431807893f58c4c2d 2efc11360813e4aca502b8d0dd7c35235ec82043 426ab27a8b8419f9338386dca95f6b90b815dac9 4876219fa4a1afc928397c92554e397605a70047 48e3b1506de2bc261ca9231bcf6d0195efdec83c 4f24a061962458cfdd7b757896b6052428b4e82f 4fe24be5ee23a9d4dfb0b878172f34b30c656b3d 529d7cbc8978b3f8aeff4e0b641173643998f74b 550dcc89af0876264b13223e06ccf79b6792119c 56ee787c3c61bf48ea1242a07036f1e20576c230 5c8066baee83baab17b2558c5f3e1c7040f9a8c6 5ee651bbd7ef137d3eb6de0e4e722e7454048c3e 6255c5398c521f3021e53979c9d38fa18d77ff1b 637a451365eb2b4f5993ab68b5df11e2cfbd458d 75a8ece658373a80638d98d9ad580207e5ad73a0 7eae90a59fd6beb3d6c80aa9188fd85d3e4565cb 86a0c139f10cc1c16f6b07f8296bf3b039cf0dcc 91426e231edf6d36ac8770912cfb63db7df0fd22 96c280fd7cfcd276db321e22888ffeca3c286648 97a5f72273387bf1b98c463bfda84f433d4ff0e2 a02e7417fe8210e0223a2bfb5a7096502819c80c ab3abdf254ef76bf90bc4a98699dec70e23613d1 c493c83be5bd8e42ff4efef84f22e8f2197c5c32 c99ca985109ab4bf12c6cc69c95e58c7b0062ca9 caca1efd9d2f158281f58d8b6a00011c2eb45366 d1560f09f05dfe03345f3453c9ccc2b877daf0d5 d23cbc22d5bf0623d91f0d1697fde9158b022d88 d2b73f9ddf437ded8b43938aee2240fc2d116653 dcbd12de2c1602bda7286e68b4481f5dd9f4795b dccd93ba9510dfa6797e10727f2d01dbe1598546 e307c9fe9fb3f6320a1169355f642fed45b5fd66 e5d62fc78f960b334e55d597cf63650165fe28b5 f347812368b8243993af224dbb6ab5610f508f5d f6151018758dbdc1d1e91a135223f12575a1eaff f6ecaef4ffcf048e41ed17eed5eb900446f17371
lintian check for phast-dbgsym_1.4+dfsg-1_amd64.deb (click to toggle)
contents of phast-dbgsym_1.4+dfsg-1_amd64.deb (click to toggle)
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lrwxrwxrwx root/root         0 2017-09-12 08:11 ./usr/share/doc/phast-dbgsym -> phast

Timestamp: 12.09.2017 / 10:01:36 (UTC)