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pairtools_0.3.0-1_amd64.changes (click to toggle)
Format:1.8
Date:Thu, 18 Jun 2020 12:19:04 +0200
Source:pairtools
Binary:python3-pairtools python3-pairtools-dbg python3-pairtools-examples
Architecture:source amd64
Version:0.3.0-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Antoni Villalonga <antoni@friki.cat>
Description:
python3-pairtools - Framework to process sequencing data from a Hi-C experiment
python3-pairtools-dbg - Process sequencing data from a Hi-C experiment (debug build)
python3-pairtools-examples - Process sequencing data from a Hi-C experiment (examples)
Closes:963052
Changes:
pairtools (0.3.0-1) unstable; urgency=medium

  * Initial release (Closes: #963052)
Files:
b15d88271518cada02829eced98b6c3a 2290 python optional pairtools_0.3.0-1.dsc
be3a887a1006d06ced79ada0345e0644 414011 python optional pairtools_0.3.0.orig.tar.gz
b0721573a20bf0630305b42b87574543 4592 python optional pairtools_0.3.0-1.debian.tar.xz
c4dec624c8d76ce43ae039217972930b 8216 python optional pairtools_0.3.0-1_amd64.buildinfo
2c72cf3c494bba54d63f3b0bb4d79b9e 809512 debug optional python3-pairtools-dbg_0.3.0-1_amd64.deb
91266f940178d722484ebf01030078ef 11724 python optional python3-pairtools-examples_0.3.0-1_amd64.deb
957a24ee2749b25feb2d6d96d32ae2da 145224 python optional python3-pairtools_0.3.0-1_amd64.deb
pairtools_0.3.0-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:pairtools
Binary:python3-pairtools, python3-pairtools-dbg, python3-pairtools-examples
Architecture:any
Version:0.3.0-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Antoni Villalonga <antoni@friki.cat>
Homepage:https://github.com/mirnylab/pairtools
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/med-team/pairtools
Vcs-Git:https://salsa.debian.org/med-team/pairtools.git
Testsuite:autopkgtest
Build-Depends:debhelper-compat (=13), dh-python, python3-all-dev, python3-all-dbg, cython3, cython3-dbg, python3-setuptools, python3-click, python3-numpy, python3-sphinx-click
Package-List:python3-pairtools deb python optional arch=any python3-pairtools-dbg deb debug optional arch=any python3-pairtools-examples deb python optional arch=any
Files:
be3a887a1006d06ced79ada0345e0644 414011 pairtools_0.3.0.orig.tar.gz
b0721573a20bf0630305b42b87574543 4592 pairtools_0.3.0-1.debian.tar.xz
lintian 2.79.0~bpo10+1 check for pairtools_0.3.0-1.dsc (click to toggle)
README.source for pairtools_0.3.0-1.dsc (click to toggle)
No README.source in this package
control file for python3-pairtools_0.3.0-1_amd64.deb (click to toggle)
Package:python3-pairtools
Source:pairtools
Version:0.3.0-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:491
Depends:libc6 (>=2.14), cython3, python3 (<<3.9), python3 (>=3.8~), python3-click, python3-nose, python3-numpy, python3:any
Section:python
Priority:optional
Homepage:https://github.com/mirnylab/pairtools
Description:
Framework to process sequencing data from a Hi-C experiment
 Simple and fast command-line framework to process sequencing data from a Hi-C
 experiment.
 .
 Process pair-end sequence alignments and perform the following operations:
 .
   - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
     sequences of Hi-C DNA molecules
   - Sort .pairs files for downstream analyses
   - Detect, tag and remove PCR/optical duplicates
   - Generate extensive statistics of Hi-C datasets
   - Select Hi-C pairs given flexibly defined criteria
   - Restore .sam alignments from Hi-C pairs
lintian 2.79.0~bpo10+1 check for python3-pairtools_0.3.0-1_amd64.deb (click to toggle)
contents of python3-pairtools_0.3.0-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-18 10:19 ./
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/bin/
-rwxr-xr-x root/root       392 2020-06-18 10:19 ./usr/bin/pairtools
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/lib/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/lib/python3/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/lib/python3/dist-packages/pairtools/
-rw-r--r-- root/root      3285 2019-04-23 18:37 ./usr/lib/python3/dist-packages/pairtools/__init__.py
-rw-r--r-- root/root        55 2019-04-23 18:37 ./usr/lib/python3/dist-packages/pairtools/__main__.py
-rw-r--r-- root/root    288968 2020-06-18 10:19 ./usr/lib/python3/dist-packages/pairtools/_dedup.cpython-38-x86_64-linux-gnu.so
-rw-r--r-- root/root      3685 2019-04-23 18:37 ./usr/lib/python3/dist-packages/pairtools/_fileio.py
-rw-r--r-- root/root     17082 2019-04-23 18:37 ./usr/lib/python3/dist-packages/pairtools/_headerops.py
-rw-r--r-- root/root       461 2019-04-23 18:37 ./usr/lib/python3/dist-packages/pairtools/_pairsam_format.py
-rw-r--r-- root/root     15771 2019-04-23 18:37 ./usr/lib/python3/dist-packages/pairtools/pairtools_dedup.py
-rw-r--r-- root/root     17327 2019-04-23 18:37 ./usr/lib/python3/dist-packages/pairtools/pairtools_filterbycov.py
-rw-r--r-- root/root      4072 2019-04-23 18:37 ./usr/lib/python3/dist-packages/pairtools/pairtools_flip.py
-rw-r--r-- root/root      3348 2019-04-23 18:37 ./usr/lib/python3/dist-packages/pairtools/pairtools_markasdup.py
-rw-r--r-- root/root      6458 2019-04-23 18:37 ./usr/lib/python3/dist-packages/pairtools/pairtools_merge.py
-rw-r--r-- root/root     30662 2019-04-23 18:37 ./usr/lib/python3/dist-packages/pairtools/pairtools_parse.py
-rw-r--r-- root/root      6603 2019-04-23 18:37 ./usr/lib/python3/dist-packages/pairtools/pairtools_phase.py
-rw-r--r-- root/root      3487 2019-04-23 18:37 ./usr/lib/python3/dist-packages/pairtools/pairtools_restrict.py
-rw-r--r-- root/root      7442 2019-04-23 18:37 ./usr/lib/python3/dist-packages/pairtools/pairtools_select.py
-rw-r--r-- root/root      4594 2019-04-23 18:37 ./usr/lib/python3/dist-packages/pairtools/pairtools_sort.py
-rw-r--r-- root/root      5005 2019-04-23 18:37 ./usr/lib/python3/dist-packages/pairtools/pairtools_split.py
-rw-r--r-- root/root     20672 2019-04-23 18:37 ./usr/lib/python3/dist-packages/pairtools/pairtools_stats.py
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/lib/python3/dist-packages/pairtools-0.3.0.egg-info/
-rw-r--r-- root/root      8847 2020-06-18 10:19 ./usr/lib/python3/dist-packages/pairtools-0.3.0.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2020-06-18 10:19 ./usr/lib/python3/dist-packages/pairtools-0.3.0.egg-info/dependency_links.txt
-rw-r--r-- root/root        45 2020-06-18 10:19 ./usr/lib/python3/dist-packages/pairtools-0.3.0.egg-info/entry_points.txt
-rw-r--r-- root/root         1 2020-06-18 10:19 ./usr/lib/python3/dist-packages/pairtools-0.3.0.egg-info/not-zip-safe
-rw-r--r-- root/root         0 2020-06-18 10:19 ./usr/lib/python3/dist-packages/pairtools-0.3.0.egg-info/requires.txt
-rw-r--r-- root/root        10 2020-06-18 10:19 ./usr/lib/python3/dist-packages/pairtools-0.3.0.egg-info/top_level.txt
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/share/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/
-rw-r--r-- root/root       370 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/README.test
-rw-r--r-- root/root       159 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/changelog.Debian.gz
-rw-r--r-- root/root       307 2019-04-23 18:37 ./usr/share/doc/python3-pairtools/changelog.gz
-rw-r--r-- root/root      2176 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/copyright
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/examples/
-rw-r--r-- root/root      2375 2019-04-23 18:37 ./usr/share/doc/python3-pairtools/examples/example_pipeline.sh
-rw-r--r-- root/root      2903 2019-04-23 18:37 ./usr/share/doc/python3-pairtools/examples/example_singlecell_pipeline.sh
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/share/man/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/share/man/man1/
-rw-r--r-- root/root     10089 2020-06-18 10:19 ./usr/share/man/man1/pairtools.1.gz
control file for python3-pairtools-dbg_0.3.0-1_amd64.deb (click to toggle)
Package:python3-pairtools-dbg
Source:pairtools
Version:0.3.0-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:2042
Depends:libc6 (>=2.14), python3-dbg (<<3.9), python3-dbg (>=3.8~), python3-dbg:any, python3-pairtools (=0.3.0-1)
Section:debug
Priority:optional
Homepage:https://github.com/mirnylab/pairtools
Description:
Process sequencing data from a Hi-C experiment (debug build)
 Debug files for python3-pairtools, a simple and fast command-line framework to
 process sequencing data from a Hi-C experiment.
 .
 Process pair-end sequence alignments and perform the following operations:
 .
   - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
     sequences of Hi-C DNA molecules
   - Sort .pairs files for downstream analyses
   - Detect, tag and remove PCR/optical duplicates
   - Generate extensive statistics of Hi-C datasets
   - Select Hi-C pairs given flexibly defined criteria
   - Restore .sam alignments from Hi-C pairs
Build-Ids:f5c146dea2bce9fcaf455b4c93ab42cf1d6964a8
lintian 2.79.0~bpo10+1 check for python3-pairtools-dbg_0.3.0-1_amd64.deb (click to toggle)
contents of python3-pairtools-dbg_0.3.0-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-18 10:19 ./
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/lib/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/lib/debug/.build-id/f5/
-rw-r--r-- root/root    458560 2020-06-18 10:19 ./usr/lib/debug/.build-id/f5/c146dea2bce9fcaf455b4c93ab42cf1d6964a8.debug
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/lib/python3/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/lib/python3/dist-packages/pairtools/
-rw-r--r-- root/root   1618040 2020-06-18 10:19 ./usr/lib/python3/dist-packages/pairtools/_dedup.cpython-38d-x86_64-linux-gnu.so
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/share/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-06-18 10:19 ./usr/share/doc/python3-pairtools-dbg -> python3-pairtools
control file for python3-pairtools-examples_0.3.0-1_amd64.deb (click to toggle)
Package:python3-pairtools-examples
Source:pairtools
Version:0.3.0-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:49
Enhances:python3-pairtools
Section:python
Priority:optional
Homepage:https://github.com/mirnylab/pairtools
Description:
Process sequencing data from a Hi-C experiment (examples)
 Simple and fast command-line framework to process sequencing data from a Hi-C
 experiment.
 .
 Process pair-end sequence alignments and perform the following operations:
 .
   - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
     sequences of Hi-C DNA molecules
   - Sort .pairs files for downstream analyses
   - Detect, tag and remove PCR/optical duplicates
   - Generate extensive statistics of Hi-C datasets
   - Select Hi-C pairs given flexibly defined criteria
   - Restore .sam alignments from Hi-C pairs
 .
 This package contains some examples
lintian 2.79.0~bpo10+1 check for python3-pairtools-examples_0.3.0-1_amd64.deb (click to toggle)
contents of python3-pairtools-examples_0.3.0-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-18 10:19 ./
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/share/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/examples/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/examples/tests/
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/examples/tests/data/
-rw-r--r-- root/root      1118 2019-04-23 18:37 ./usr/share/doc/python3-pairtools/examples/tests/data/mock.2.pairsam
-rw-r--r-- root/root       476 2019-04-23 18:37 ./usr/share/doc/python3-pairtools/examples/tests/data/mock.4dedup.pairsam
-rw-r--r-- root/root       717 2019-04-23 18:37 ./usr/share/doc/python3-pairtools/examples/tests/data/mock.4filterbycov.pairs
-rw-r--r-- root/root       773 2019-04-23 18:37 ./usr/share/doc/python3-pairtools/examples/tests/data/mock.4flip.pairs
-rw-r--r-- root/root        18 2019-04-23 18:37 ./usr/share/doc/python3-pairtools/examples/tests/data/mock.chrom.sizes
-rw-r--r-- root/root      1616 2019-04-23 18:37 ./usr/share/doc/python3-pairtools/examples/tests/data/mock.pairsam
-rw-r--r-- root/root       600 2019-04-23 18:37 ./usr/share/doc/python3-pairtools/examples/tests/data/mock.sam.gz
-rw-r--r-- root/root      3985 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/examples/tests/test_dedup.py
-rw-r--r-- root/root      1083 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/examples/tests/test_filterbycov.py.gz
-rw-r--r-- root/root      1822 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/examples/tests/test_flip.py
-rw-r--r-- root/root       967 2019-04-23 18:37 ./usr/share/doc/python3-pairtools/examples/tests/test_headerops.py.gz
-rw-r--r-- root/root      1052 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/examples/tests/test_markasdup.py
-rw-r--r-- root/root      2752 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/examples/tests/test_merge.py
-rw-r--r-- root/root      1341 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/examples/tests/test_parse.py.gz
-rw-r--r-- root/root       744 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/examples/tests/test_select.py.gz
-rw-r--r-- root/root      2110 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/examples/tests/test_sort.py
-rw-r--r-- root/root      2723 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/examples/tests/test_split.py
-rw-r--r-- root/root      1694 2020-06-18 10:19 ./usr/share/doc/python3-pairtools/examples/tests/test_stats.py
drwxr-xr-x root/root         0 2020-06-18 10:19 ./usr/share/doc/python3-pairtools-examples/
-rw-r--r-- root/root       159 2020-06-18 10:19 ./usr/share/doc/python3-pairtools-examples/changelog.Debian.gz
-rw-r--r-- root/root       307 2019-04-23 18:37 ./usr/share/doc/python3-pairtools-examples/changelog.gz
-rw-r--r-- root/root      2176 2020-06-18 10:19 ./usr/share/doc/python3-pairtools-examples/copyright

Timestamp: 20.06.2020 / 10:01:15 (UTC)