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omegamap_0.5-1_amd64.changes (click to toggle)
Format:1.8
Date:Thu, 28 Jun 2018 20:11:26 +0200
Source:omegamap
Binary:omegamap omegamap-doc
Architecture:source amd64 all
Version:0.5-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
omegamap   - describing selection and recombination in sequences
omegamap-doc - Documentation for omegaMap
Closes:902940
Changes:
omegamap (0.5-1) unstable; urgency=medium

  * Initial release (Closes: #902940).
Files:
a0d9f5ecd813b3ab13db3e5097aaf39b 2046 science optional omegamap_0.5-1.dsc
668d7941d997d7cf9a493f156fcf0219 610728 science optional omegamap_0.5.orig.tar.xz
bc6ad4ebb246e41f0bd0364b3b4a1532 3192 science optional omegamap_0.5-1.debian.tar.xz
c119f9b2361c2cba9d97ec85c6a5f0a3 3250840 debug optional omegamap-dbgsym_0.5-1_amd64.deb
a345a5bc2dd39c97632fd475564c1ecf 231216 science optional omegamap-doc_0.5-1_all.deb
b7597d2d3e8e9998b9b81bcf3a8f3f51 6434 science optional omegamap_0.5-1_amd64.buildinfo
6d045c82f90e430af3e57c5f00d755db 202460 science optional omegamap_0.5-1_amd64.deb
omegamap_0.5-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:omegamap
Binary:omegamap, omegamap-doc
Architecture:any all
Version:0.5-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Steffen Moeller <moeller@debian.org>, Tony Travis <tony.travis@minke-informatics.co.uk>
Homepage:http://www.danielwilson.me.uk/omegaMap.html
Standards-Version:4.1.4
Vcs-Browser:https://salsa.debian.org/med-team/omegamap
Vcs-Git:https://salsa.debian.org/med-team/omegamap.git
Build-Depends:debhelper (>=11)
Package-List:omegamap deb science optional arch=any omegamap-doc deb science optional arch=all
Files:
668d7941d997d7cf9a493f156fcf0219 610728 omegamap_0.5.orig.tar.xz
bc6ad4ebb246e41f0bd0364b3b4a1532 3192 omegamap_0.5-1.debian.tar.xz
lintian check for omegamap_0.5-1.dsc (click to toggle)
README.source for omegamap_0.5-1.dsc (click to toggle)
The license was asked to be clarified in an email to Prof. D. Wilson on
June 28th, 2018. He replied at the very same day that there was
"never a license file distributed with omegaMap". He "would be happy
for the approrpiate GNU license to be applied".  Done.

 ---
     Steffen Möller <moeller@debian.org> 
control file for omegamap_0.5-1_amd64.deb (click to toggle)
Package:omegamap
Version:0.5-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1135
Depends:libc6 (>=2.14), libgcc1 (>=1:3.0), libstdc++6 (>=5.2)
Section:science
Priority:optional
Homepage:http://www.danielwilson.me.uk/omegaMap.html
Description:
describing selection and recombination in sequences
 OmegaMap is a program for detecting natural selection and recombination
 in DNA or RNA sequences.  It is based on a model of population
 genetics and molecular evolution.  The signature of natural selection
 is determined by the relative excess of non-synonymous to synonymous
 polymorphisms.  The signature of recombination is detected from the
 patterns of linkage disequilibrium.
lintian check for omegamap_0.5-1_amd64.deb (click to toggle)
W: omegamap: binary-without-manpage usr/bin/decode
W: omegamap: binary-without-manpage usr/bin/omegaMap
W: omegamap: binary-without-manpage usr/bin/omegaMapTP
W: omegamap: binary-without-manpage usr/bin/order
W: omegamap: binary-without-manpage usr/bin/permute
W: omegamap: binary-without-manpage usr/bin/summarize
contents of omegamap_0.5-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-06-28 18:11 ./
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/bin/
-rwxr-xr-x root/root    371928 2018-06-28 18:11 ./usr/bin/decode
-rwxr-xr-x root/root    335064 2018-06-28 18:11 ./usr/bin/omegaMap
-rwxr-xr-x root/root    330968 2018-06-28 18:11 ./usr/bin/omegaMapTP
-rwxr-xr-x root/root     14424 2018-06-28 18:11 ./usr/bin/order
-rwxr-xr-x root/root     43168 2018-06-28 18:11 ./usr/bin/permute
-rwxr-xr-x root/root     39072 2018-06-28 18:11 ./usr/bin/summarize
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/share/
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/share/doc/omegamap/
-rw-r--r-- root/root       159 2018-06-28 18:11 ./usr/share/doc/omegamap/changelog.Debian.gz
-rw-r--r-- root/root      1098 2018-06-28 18:11 ./usr/share/doc/omegamap/copyright
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/share/doc/omegamap/examples/
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/share/doc/omegamap/examples/Examples/
-rw-r--r-- root/root      1148 2018-06-28 18:11 ./usr/share/doc/omegamap/examples/Examples/TP.FASTA.txt.gz
-rw-r--r-- root/root       926 2018-06-28 18:11 ./usr/share/doc/omegamap/examples/Examples/TP.ini
-rw-r--r-- root/root      1402 2018-06-28 18:11 ./usr/share/doc/omegamap/examples/Examples/omegaML.ini
-rw-r--r-- root/root      2170 2018-06-28 18:11 ./usr/share/doc/omegamap/examples/Examples/omegaMap.ini
-rw-r--r-- root/root       880 2018-06-28 18:11 ./usr/share/doc/omegamap/examples/Examples/porB3.carriage.noindels.txt.gz
-rw-r--r-- root/root       898 2018-06-28 18:11 ./usr/share/doc/omegamap/examples/Examples/porB3.carriage.txt.gz
control file for omegamap-doc_0.5-1_all.deb (click to toggle)
Package:omegamap-doc
Source:omegamap
Version:0.5-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:289
Section:science
Priority:optional
Homepage:http://www.danielwilson.me.uk/omegaMap.html
Description:
Documentation for omegaMap
 OmegaMap is a program for detecting natural selection and recombination
 in DNA or RNA sequences.  It is based on a model of population
 genetics and molecular evolution.  The signature of natural selection
 is determined by the relative excess of non-synonymous to synonymous
 polymorphisms.  The signature of recombination is detected from the
 patterns of linkage disequilibrium.
 .
 This package provides a PDF file with accompanying documentation.
lintian check for omegamap-doc_0.5-1_all.deb (click to toggle)
contents of omegamap-doc_0.5-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2018-06-28 18:11 ./
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/share/
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/share/doc/omegamap/
-rw-r--r-- root/root      2355 2018-06-28 18:11 ./usr/share/doc/omegamap/R-functions.txt.gz
-rw-r--r-- root/root    279825 2018-06-28 18:11 ./usr/share/doc/omegamap/documentation.pdf
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/share/doc/omegamap-doc/
-rw-r--r-- root/root       159 2018-06-28 18:11 ./usr/share/doc/omegamap-doc/changelog.Debian.gz
-rw-r--r-- root/root      1098 2018-06-28 18:11 ./usr/share/doc/omegamap-doc/copyright
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/share/doc-base/
-rw-r--r-- root/root       233 2018-06-28 18:11 ./usr/share/doc-base/omegamap
control file for omegamap-dbgsym_0.5-1_amd64.deb (click to toggle)
Package:omegamap-dbgsym
Source:omegamap
Version:0.5-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:3377
Depends:omegamap (=0.5-1)
Section:debug
Priority:optional
Description:
debug symbols for omegamap
Build-Ids:37670d8c0264a25f79a1c10d20516ef5602dc14f 7218cc0c1dc9f102fd5a8ec18ed841952b8ad2cd 80156c9236cb8798cc9adfe0826d0f788b108b41 896d0f643962c6b188cc52a9400c2e39f8f21d4b 8ffe6dc36a12124c7692a4ec5394451458455845 a8dcea04dfcc95a3c7b68307b582c6fe4a046b79
lintian check for omegamap-dbgsym_0.5-1_amd64.deb (click to toggle)
contents of omegamap-dbgsym_0.5-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-06-28 18:11 ./
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/lib/
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/lib/debug/
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/lib/debug/.build-id/37/
-rw-r--r-- root/root   1172432 2018-06-28 18:11 ./usr/lib/debug/.build-id/37/670d8c0264a25f79a1c10d20516ef5602dc14f.debug
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/lib/debug/.build-id/72/
-rw-r--r-- root/root    949240 2018-06-28 18:11 ./usr/lib/debug/.build-id/72/18cc0c1dc9f102fd5a8ec18ed841952b8ad2cd.debug
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/lib/debug/.build-id/80/
-rw-r--r-- root/root    176280 2018-06-28 18:11 ./usr/lib/debug/.build-id/80/156c9236cb8798cc9adfe0826d0f788b108b41.debug
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/lib/debug/.build-id/89/
-rw-r--r-- root/root    167728 2018-06-28 18:11 ./usr/lib/debug/.build-id/89/6d0f643962c6b188cc52a9400c2e39f8f21d4b.debug
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/lib/debug/.build-id/8f/
-rw-r--r-- root/root     30288 2018-06-28 18:11 ./usr/lib/debug/.build-id/8f/fe6dc36a12124c7692a4ec5394451458455845.debug
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/lib/debug/.build-id/a8/
-rw-r--r-- root/root    944232 2018-06-28 18:11 ./usr/lib/debug/.build-id/a8/dcea04dfcc95a3c7b68307b582c6fe4a046b79.debug
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/share/
drwxr-xr-x root/root         0 2018-06-28 18:11 ./usr/share/doc/
lrwxrwxrwx root/root         0 2018-06-28 18:11 ./usr/share/doc/omegamap-dbgsym -> omegamap

Timestamp: 21.08.2018 / 21:01:11 (UTC)