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ngmlr_0.2.7+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Wed, 17 Jun 2020 00:40:24 +0530
Source:ngmlr
Binary:ngmlr ngmlr-dbgsym
Architecture:source amd64
Version:0.2.7+dfsg-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Nilesh Patra <npatra974@gmail.com>
Description:
ngmlr      - CoNvex Gap-cost alignMents for Long Reads
Closes:963047
Changes:
ngmlr (0.2.7+dfsg-1) unstable; urgency=medium

  * Initial release (Closes: #963047)
Files:
d0444d98604169aa8220f198afef6f5c 2101 science optional ngmlr_0.2.7+dfsg-1.dsc
685874d736f1f967b49f906d89b2d2cd 667520 science optional ngmlr_0.2.7+dfsg.orig.tar.gz
37b27404cd10f3edc60a91b6cac0438d 5684 science optional ngmlr_0.2.7+dfsg-1.debian.tar.xz
6f0984f6e5408396f1ec919ab33588c8 1339608 debug optional ngmlr-dbgsym_0.2.7+dfsg-1_amd64.deb
583800e7bf9abc1c80794a2326192d9d 6821 science optional ngmlr_0.2.7+dfsg-1_amd64.buildinfo
72604a6fec55ccff38b7c17ac24d24e6 671244 science optional ngmlr_0.2.7+dfsg-1_amd64.deb
ngmlr_0.2.7+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:ngmlr
Binary:ngmlr
Architecture:any
Version:0.2.7+dfsg-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Nilesh Patra <npatra974@gmail.com>, Pranav Ballaney <ballaneypranav@gmail.com>
Homepage:https://github.com/philres/ngmlr
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/med-team/ngmlr
Vcs-Git:https://salsa.debian.org/med-team/ngmlr.git
Testsuite:autopkgtest
Testsuite-Triggers:bedtools, samtools
Build-Depends:debhelper-compat (=13), cmake, zlib1g-dev, libssw-dev, libtclap-dev, libhts-dev
Package-List:ngmlr deb science optional arch=any
Files:
685874d736f1f967b49f906d89b2d2cd 667520 ngmlr_0.2.7+dfsg.orig.tar.gz
37b27404cd10f3edc60a91b6cac0438d 5684 ngmlr_0.2.7+dfsg-1.debian.tar.xz
lintian 2.79.0~bpo10+1 check for ngmlr_0.2.7+dfsg-1.dsc (click to toggle)
README.source for ngmlr_0.2.7+dfsg-1.dsc (click to toggle)
No README.source in this package
control file for ngmlr_0.2.7+dfsg-1_amd64.deb (click to toggle)
Package:ngmlr
Version:0.2.7+dfsg-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1122
Depends:libc6 (>=2.29), libgcc-s1 (>=3.0), libssw0 (>=1.1), libstdc++6 (>=9), zlib1g (>=1:1.1.4)
Section:science
Priority:optional
Homepage:https://github.com/philres/ngmlr
Description:
CoNvex Gap-cost alignMents for Long Reads
 Ngmlr is a long-read mapper designed to sensitively align PacBilo or
 Oxford Nanopore to (large) reference genomes. It was designed to quickly
 and correctly align the reads, including those spanning (complex)
 structural variations. Ngmlr uses an SV aware k-mer search to find
 approximate mapping locations for a read and then a banded Smith-
 Waterman alignment algorithm to compute the final alignment. Ngmlr uses
 a convex gap cost model that penalizes gap extensions for longer gaps
 less than for shorter ones to compute precise alignments.
lintian 2.79.0~bpo10+1 check for ngmlr_0.2.7+dfsg-1_amd64.deb (click to toggle)
contents of ngmlr_0.2.7+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-16 19:10 ./
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/bin/
-rwxr-xr-x root/root    411968 2020-06-16 19:10 ./usr/bin/ngmlr
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/share/
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/share/doc/ngmlr/
-rw-r--r-- root/root      3056 2018-06-25 08:11 ./usr/share/doc/ngmlr/README.md.gz
-rw-r--r-- root/root       278 2020-06-16 19:10 ./usr/share/doc/ngmlr/README.test
-rw-r--r-- root/root       160 2020-06-16 19:10 ./usr/share/doc/ngmlr/changelog.Debian.gz
-rw-r--r-- root/root      1554 2020-06-16 19:10 ./usr/share/doc/ngmlr/copyright
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/share/doc/ngmlr/examples/
drwxr-xr-x root/root         0 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/data/
drwxr-xr-x root/root         0 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/data/test_1/
-rw-r--r-- root/root      1269 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/data/test_1/expected.txt
-rw-r--r-- root/root     13342 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/data/test_1/long_name.fa
-rw-r--r-- root/root    139688 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/data/test_1/ref_chr6_140kb.fa
drwxr-xr-x root/root         0 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/data/test_2/
-rw-r--r-- root/root       333 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/data/test_2/expected.bed
-rw-r--r-- root/root     10671 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/data/test_2/reads_100_2200bp.fa
-rw-r--r-- root/root     19654 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/data/test_2/ref_chr21_20kb.fa
-rw-r--r-- root/root       333 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/data/test_2/result.bed
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/share/doc/ngmlr/examples/data/test_3/
-rw-r--r-- root/root    414906 2020-06-16 19:10 ./usr/share/doc/ngmlr/examples/data/test_3/read.fa.gz
-rw-r--r-- root/root     37532 2020-06-16 19:10 ./usr/share/doc/ngmlr/examples/data/test_3/reference.fasta.gz
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/share/doc/ngmlr/examples/data/test_4/
-rw-r--r-- root/root        70 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/data/test_4/expected.txt
-rw-r--r-- root/root      3999 2020-06-16 19:10 ./usr/share/doc/ngmlr/examples/data/test_4/read.fa.gz
-rw-r--r-- root/root     37532 2020-06-16 19:10 ./usr/share/doc/ngmlr/examples/data/test_4/reference.fasta.gz
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/share/doc/ngmlr/examples/data/test_5/
-rw-r--r-- root/root      3978 2020-06-16 19:10 ./usr/share/doc/ngmlr/examples/data/test_5/read.fa.gz
-rw-r--r-- root/root      4729 2020-06-16 19:10 ./usr/share/doc/ngmlr/examples/data/test_5/reference.fasta.gz
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/share/doc/ngmlr/examples/data/test_6/
-rw-r--r-- root/root       442 2020-06-16 19:10 ./usr/share/doc/ngmlr/examples/data/test_6/read.fa.gz
-rw-r--r-- root/root      3034 2020-06-16 19:10 ./usr/share/doc/ngmlr/examples/data/test_6/reference.fasta.gz
-rwxr-xr-x root/root       641 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/test_1.sh
-rwxr-xr-x root/root       676 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/test_2.sh
-rwxr-xr-x root/root       999 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/test_3.sh
-rwxr-xr-x root/root       711 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/test_4.sh
-rwxr-xr-x root/root       610 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/test_5.sh
-rwxr-xr-x root/root       609 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/test_6.sh
-rwxr-xr-x root/root       198 2018-06-25 08:11 ./usr/share/doc/ngmlr/examples/test_travis.sh
-rw-r--r-- root/root      1667 2020-06-16 19:10 ./usr/share/doc/ngmlr/run-unit-test
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/share/man/
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/share/man/man1/
-rw-r--r-- root/root      1670 2020-06-16 19:10 ./usr/share/man/man1/ngmlr.1.gz
control file for ngmlr-dbgsym_0.2.7+dfsg-1_amd64.deb (click to toggle)
Package:ngmlr-dbgsym
Source:ngmlr
Version:0.2.7+dfsg-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1420
Depends:ngmlr (=0.2.7+dfsg-1)
Section:debug
Priority:optional
Description:
debug symbols for ngmlr
Build-Ids:6bfb6a31cef78b9f6d24c0e6724c4738de3e23eb
lintian 2.79.0~bpo10+1 check for ngmlr-dbgsym_0.2.7+dfsg-1_amd64.deb (click to toggle)
contents of ngmlr-dbgsym_0.2.7+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-16 19:10 ./
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/lib/
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/lib/debug/.build-id/6b/
-rw-r--r-- root/root   1443608 2020-06-16 19:10 ./usr/lib/debug/.build-id/6b/fb6a31cef78b9f6d24c0e6724c4738de3e23eb.debug
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/share/
drwxr-xr-x root/root         0 2020-06-16 19:10 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-06-16 19:10 ./usr/share/doc/ngmlr-dbgsym -> ngmlr

Timestamp: 18.06.2020 / 12:01:11 (UTC)