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mmseqs2_9-d36de+ds-1_amd64.changes (click to toggle)
Format:1.8
Date:Mon, 15 Jul 2019 13:45:03 +0100
Source:mmseqs2
Binary:mmseqs2 mmseqs2-dbgsym mmseqs2-examples
Architecture:source amd64 all
Version:9-d36de+ds-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Shayan Doust <hello@shayandoust.me>
Description:
mmseqs2    - ultra fast and sensitive protein search and clustering
mmseqs2-examples - optional resources for the mmseqs2 package
Closes:932369
Changes:
mmseqs2 (9-d36de+ds-1) unstable; urgency=medium

  * Initial release (Closes: #932369)
Files:
1b8ee5bb5486bb038aae12e7cc8d8145 2115 science optional mmseqs2_9-d36de+ds-1.dsc
af4532d9e528e6533685018588dbce41 4276540 science optional mmseqs2_9-d36de+ds.orig.tar.xz
2254d3d71172cba8eabefafb6c9d2f72 6545020 science optional mmseqs2_9-d36de+ds-1.debian.tar.xz
3a94021adb180b63207bf20ec3302e30 41448956 debug optional mmseqs2-dbgsym_9-d36de+ds-1_amd64.deb
bd77ef503f2a5a2c86390b6663cd7d89 6840216 science optional mmseqs2-examples_9-d36de+ds-1_all.deb
fdfedddac18826da7c479e88d77d9824 7970 science optional mmseqs2_9-d36de+ds-1_amd64.buildinfo
d0a3facc164b0eb02485b3d60400f7ad 5204660 science optional mmseqs2_9-d36de+ds-1_amd64.deb
mmseqs2_9-d36de+ds-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:mmseqs2
Binary:mmseqs2, mmseqs2-examples
Architecture:any all
Version:9-d36de+ds-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Shayan Doust <hello@shayandoust.me>
Homepage:https://github.com/soedinglab/MMseqs2
Standards-Version:4.4.0
Vcs-Browser:https://salsa.debian.org/med-team/mmseqs2
Vcs-Git:https://salsa.debian.org/med-team/mmseqs2.git
Testsuite:autopkgtest
Build-Depends:debhelper (>=12~), cmake, libgzstream-dev, libzstd-dev, zlib1g-dev
Package-List:mmseqs2 deb science optional arch=any mmseqs2-examples deb science optional arch=all
Files:
af4532d9e528e6533685018588dbce41 4276540 mmseqs2_9-d36de+ds.orig.tar.xz
2254d3d71172cba8eabefafb6c9d2f72 6545020 mmseqs2_9-d36de+ds-1.debian.tar.xz
lintian 2.16.0~bpo9+1 check for mmseqs2_9-d36de+ds-1.dsc (click to toggle)
README.source for mmseqs2_9-d36de+ds-1.dsc (click to toggle)
No README.source in this package
control file for mmseqs2_9-d36de+ds-1_amd64.deb (click to toggle)
Package:mmseqs2
Version:9-d36de+ds-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:21425
Depends:libbz2-1.0, libc6 (>=2.27), libgcc1 (>=1:3.0), libgomp1 (>=4.9), libgzstream0 (>=1.5+dfsg), libstdc++6 (>=5.2), libzstd1 (>=1.3.8), zlib1g (>=1:1.1.4)
Section:science
Priority:optional
Homepage:https://github.com/soedinglab/MMseqs2
Description:
ultra fast and sensitive protein search and clustering
 MMseqs2 (Many-against-Many sequence searching) is a software suite to
 search and cluster huge proteins/nucleotide sequence sets. MMseqs2 is
 open source GPL-licensed software implemented in C++ for Linux, MacOS,
 and (as beta version, via cygwin) Windows. The software is designed to
 run on multiple cores and servers and exhibits very good scalability.
 MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it
 achieves almost the same sensitivity. It can perform profile searches
 with the same sensitivity as PSI-BLAST at over 400 times its speed.
lintian 2.16.0~bpo9+1 check for mmseqs2_9-d36de+ds-1_amd64.deb (click to toggle)
contents of mmseqs2_9-d36de+ds-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2019-07-15 12:45 ./
drwxr-xr-x root/root         0 2019-07-15 12:45 ./usr/
drwxr-xr-x root/root         0 2019-07-15 12:45 ./usr/bin/
-rwxr-xr-x root/root   2952072 2019-07-15 12:45 ./usr/bin/mmseqs
drwxr-xr-x root/root         0 2019-07-15 12:45 ./usr/lib/
drwxr-xr-x root/root         0 2019-07-15 12:45 ./usr/lib/mmseqs2/
drwxr-xr-x root/root         0 2019-07-15 12:45 ./usr/lib/mmseqs2/test/
-rw-r--r-- root/root        48 2019-07-15 12:45 ./usr/lib/mmseqs2/test/dataGap
-rw-r--r-- root/root        53 2019-07-15 12:45 ./usr/lib/mmseqs2/test/dataGap.index
-rw-r--r-- root/root        30 2019-07-15 12:45 ./usr/lib/mmseqs2/test/dataLinear
-rw-r--r-- root/root        40 2019-07-15 12:45 ./usr/lib/mmseqs2/test/dataLinear.index
-rwxr-xr-x root/root    780808 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_alignment
-rwxr-xr-x root/root    748040 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_alignmentperformance
-rwxr-xr-x root/root    743944 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_alignmenttraceback
-rwxr-xr-x root/root    596472 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_alp
-rwxr-xr-x root/root    772616 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_backtracetranslator
-rwxr-xr-x root/root    600344 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_bestalphabet
-rwxr-xr-x root/root    432408 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_compositionbias
-rwxr-xr-x root/root    100592 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_counting
-rwxr-xr-x root/root    260336 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_dbreader
-rwxr-xr-x root/root    256240 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_dbreaderindexserialization
-rwxr-xr-x root/root    317680 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_dbreaderzstd
-rwxr-xr-x root/root    469272 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_diagonalscoring
-rwxr-xr-x root/root    448792 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_diagonalscoringperformance
-rwxr-xr-x root/root    665880 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_indextable
-rwxr-xr-x root/root    456984 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_kmergenerator
-rwxr-xr-x root/root    620944 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_kmernucl
-rwxr-xr-x root/root    432408 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_kmerscore
-rwxr-xr-x root/root    768520 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_ksw2
-rwxr-xr-x root/root     18592 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_kwaymerge
-rwxr-xr-x root/root    805384 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_multiplealignment
-rwxr-xr-x root/root    752136 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_profilealignment
-rwxr-xr-x root/root    875016 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_profilestates
-rwxr-xr-x root/root    875016 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_pssm
-rwxr-xr-x root/root    805384 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_pssmprune
-rwxr-xr-x root/root    411928 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_reducematrix
-rwxr-xr-x root/root    416024 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_scorematrixserialization
-rwxr-xr-x root/root    436504 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_sequenceindex
-rwxr-xr-x root/root    444696 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_tantan
-rwxr-xr-x root/root    157936 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_taxonomy
-rwxr-xr-x root/root     39144 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_tinyexpr
-rwxr-xr-x root/root    108904 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_translate
-rwxr-xr-x root/root    100592 2019-07-15 12:45 ./usr/lib/mmseqs2/test/test_util
drwxr-xr-x root/root         0 2019-07-15 12:45 ./usr/share/
drwxr-xr-x root/root         0 2019-07-15 12:45 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-07-15 12:45 ./usr/share/doc/mmseqs2/
-rw-r--r-- root/root      4795 2019-07-15 12:45 ./usr/share/doc/mmseqs2/README.md.gz
-rw-r--r-- root/root       159 2019-07-15 12:45 ./usr/share/doc/mmseqs2/changelog.Debian.gz
-rw-r--r-- root/root     44538 2019-07-15 12:45 ./usr/share/doc/mmseqs2/copyright
-rw-r--r-- root/root   3171441 2019-07-15 12:45 ./usr/share/doc/mmseqs2/userguide.pdf.gz
drwxr-xr-x root/root         0 2019-07-15 12:45 ./usr/share/man/
drwxr-xr-x root/root         0 2019-07-15 12:45 ./usr/share/man/man1/
-rw-r--r-- root/root      3355 2019-07-15 12:45 ./usr/share/man/man1/mmseqs.1.gz
drwxr-xr-x root/root         0 2019-07-15 12:45 ./usr/share/mmseqs2/
-rwxr-xr-x root/root       444 2019-07-15 12:45 ./usr/share/mmseqs2/bash-completion.sh
control file for mmseqs2-dbgsym_9-d36de+ds-1_amd64.deb (click to toggle)
Package:mmseqs2-dbgsym
Source:mmseqs2
Version:9-d36de+ds-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:43473
Depends:mmseqs2 (=9-d36de+ds-1)
Section:debug
Priority:optional
Description:
debug symbols for mmseqs2
Build-Ids:036c92c8e67409fd4b50241dd69e025f8caf36eb 0df50588dca7151f00715eca9b5e5077dfc881a0 1113f2f66a5eb49d3397c684dbd4762c13e575ec 1172110bd6abcfd10ce7f5bb820a457ffca48310 12d57b9adcce4797074f925d416a082f6a5e838f 1486b748b088f153b0312163982c697226fe6515 16e8f73143fa160bd28fcbedfae6008255cf77ff 1f671ddf8c6be9edcf6e40c5031268bb4d3c1542 1fe7f6f246767b0bceeae2b794297e04175e79f2 28d288f2edd41e2206868fc09314276dc303f77b 2dd96c75338570071a775eef9f1df2d42dba7258 31fd56d9587e03ffa1b6663b6553cb0c548ea62d 47809580bf42676a65be93c81d1908acedecacb5 4b7bd439aef55ae85a41dc01b7a16d5e932f93d1 4d0943a007db786da88d83cf97a4284332e6f074 677735b46c8de1b598687695b0129724a794e8c7 67e6c401889e966007bfded9e5914fb8c5b85ee5 6bc1c87425ea5125fbdc4a780800a8b3b05c906c 81ed059e619294fa2a55882bac8bd250008ae8df 8a6bdd027b68ea03e904f5f741592bc0d52292ce 8d5b8df78c96844cf8e6f37ee1994c8d59126805 9b996e88e1298427225e79e17fd9053ea2990492 a3fcef82605c5124aec51847c28e22099128a463 baf443dea4587948e539f239de193d12849131d6 c2c51793048f1c40c14f8c5d1b2246593044ecee c367a682100e5121052fb9070c1bfd7bfb7d9fb0 cea1e8ae688fa6579c5b084f1687018cd9fa1820 ddc750259ec50396579db4e98c58ddb83922d981 dfbcacb27470746ca931615091f9753de52cfe06 e9ef6ed78a6ff363e4c8f2a71f095933d5b83736 f0df97bafeba33ddb7787c48b5d86b0bd683a105 f2e88ff57c91322b5c2af827ce8f08c779b625e0 fa62afdac3646d05a099d14ae5915e864dae081c
lintian 2.16.0~bpo9+1 check for mmseqs2-dbgsym_9-d36de+ds-1_amd64.deb (click to toggle)
contents of mmseqs2-dbgsym_9-d36de+ds-1_amd64.deb (click to toggle)
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drwxr-xr-x root/root         0 2019-07-15 12:45 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2019-07-15 12:45 ./usr/lib/debug/.dwz/x86_64-linux-gnu/
-rw-r--r-- root/root    878680 2019-07-15 12:45 ./usr/lib/debug/.dwz/x86_64-linux-gnu/mmseqs2.debug
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lrwxrwxrwx root/root         0 2019-07-15 12:45 ./usr/share/doc/mmseqs2-dbgsym -> mmseqs2
control file for mmseqs2-examples_9-d36de+ds-1_all.deb (click to toggle)
Package:mmseqs2-examples
Source:mmseqs2
Version:9-d36de+ds-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:6866
Recommends:mmseqs2
Section:science
Priority:optional
Homepage:https://github.com/soedinglab/MMseqs2
Description:
optional resources for the mmseqs2 package
 MMseqs2 (Many-against-Many sequence searching) is a software suite to
 search and cluster huge proteins/nucleotide sequence sets. MMseqs2 is
 open source GPL-licensed software implemented in C++ for Linux, MacOS,
 and (as beta version, via cygwim) Windows. The software is designed to
 run on multiple cores and servers and exhibits very good scalability.
 MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it
 achieves almost the same sensitivity. It can perform profile searches
 with the same sensitivity as PSI-BLAST at over 400 times its speed.
lintian 2.16.0~bpo9+1 check for mmseqs2-examples_9-d36de+ds-1_all.deb (click to toggle)
contents of mmseqs2-examples_9-d36de+ds-1_all.deb (click to toggle)
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Timestamp: 20.07.2019 / 22:11:38 (UTC)