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minimap2_2.14+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Fri, 09 Nov 2018 23:36:05 +0100
Source:minimap2
Binary:minimap2
Architecture:source amd64
Version:2.14+dfsg-1
Distribution:unstable
Urgency:low
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
minimap2   - versatile pairwise aligner for genomic and spliced nucleotide seq
Closes:906332
Changes:
minimap2 (2.14+dfsg-1) unstable; urgency=low

  * Initial packaging (Closes: #906332)
Files:
d6aeb37ee033865d650a48a73ddec6d7 2081 science optional minimap2_2.14+dfsg-1.dsc
12f7c9a273b8f86a9abaa7d780cc07e8 165484 science optional minimap2_2.14+dfsg.orig.tar.xz
e0137216a1351eed31f284c057d7cd5c 4400 science optional minimap2_2.14+dfsg-1.debian.tar.xz
847c0bb805594a9e00d4cbbc8abac58a 338316 debug optional minimap2-dbgsym_2.14+dfsg-1_amd64.deb
c216822881deaf3366f4dac2d2d7a7f9 11769 science optional minimap2_2.14+dfsg-1_amd64.buildinfo
abb8de71c4f9a15119d87ecd8714a924 369480 science optional minimap2_2.14+dfsg-1_amd64.deb
minimap2_2.14+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:minimap2
Binary:minimap2
Architecture:any
Version:2.14+dfsg-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Andreas Tille <tille@debian.org>
Homepage:https://github.com/lh3/minimap2
Standards-Version:4.2.0
Vcs-Browser:https://salsa.debian.org/med-team/minimap2
Vcs-Git:https://salsa.debian.org/med-team/minimap2.git
Testsuite:autopkgtest
Build-Depends:debhelper (>=11~), d-shlibs, zlib1g-dev, texlive-latex-extra, texlive-science, texlive-font-utils, ghostscript, gnuplot
Package-List:minimap2 deb science optional arch=any
Files:
12f7c9a273b8f86a9abaa7d780cc07e8 165484 minimap2_2.14+dfsg.orig.tar.xz
e0137216a1351eed31f284c057d7cd5c 4400 minimap2_2.14+dfsg-1.debian.tar.xz
lintian 2.5.111~bpo9+1 check for minimap2_2.14+dfsg-1.dsc (click to toggle)
README.source for minimap2_2.14+dfsg-1.dsc (click to toggle)
No README.source in this package
control file for minimap2-dbgsym_2.14+dfsg-1_amd64.deb (click to toggle)
Package:minimap2-dbgsym
Source:minimap2
Version:2.14+dfsg-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:355
Depends:minimap2 (=2.14+dfsg-1)
Section:debug
Priority:optional
Description:
debug symbols for minimap2
Build-Ids:6f0d579885dc80a8f59a91ad03f8719cdc0ebcbd
lintian 2.5.111~bpo9+1 check for minimap2-dbgsym_2.14+dfsg-1_amd64.deb (click to toggle)
contents of minimap2-dbgsym_2.14+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-11-09 22:36 ./
drwxr-xr-x root/root         0 2018-11-09 22:36 ./usr/
drwxr-xr-x root/root         0 2018-11-09 22:36 ./usr/lib/
drwxr-xr-x root/root         0 2018-11-09 22:36 ./usr/lib/debug/
drwxr-xr-x root/root         0 2018-11-09 22:36 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2018-11-09 22:36 ./usr/lib/debug/.build-id/6f/
-rw-r--r-- root/root    352944 2018-11-09 22:36 ./usr/lib/debug/.build-id/6f/0d579885dc80a8f59a91ad03f8719cdc0ebcbd.debug
drwxr-xr-x root/root         0 2018-11-09 22:36 ./usr/share/
drwxr-xr-x root/root         0 2018-11-09 22:36 ./usr/share/doc/
lrwxrwxrwx root/root         0 2018-11-09 22:36 ./usr/share/doc/minimap2-dbgsym -> minimap2
control file for minimap2_2.14+dfsg-1_amd64.deb (click to toggle)
Package:minimap2
Version:2.14+dfsg-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:489
Depends:libc6 (>=2.27), zlib1g (>=1:1.1.4)
Section:science
Priority:optional
Homepage:https://github.com/lh3/minimap2
Description:
versatile pairwise aligner for genomic and spliced nucleotide sequences
 Minimap2 is a versatile sequence alignment program that aligns DNA or
 mRNA sequences against a large reference database. Typical use cases
 include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
 human genome; (2) finding overlaps between long reads with error rate up
 to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
 or Direct RNA reads against a reference genome; (4) aligning Illumina
 single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
 genome alignment between two closely related species with divergence
 below ~15%.
 .
 For ~10kb noisy reads sequences, minimap2 is tens of times faster than
 mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It
 is more accurate on simulated long reads and produces biologically
 meaningful alignment ready for downstream analyses. For >100bp Illumina
 short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and
 as accurate on simulated data. Detailed evaluations are available from
 the minimap2 paper or the preprint.
lintian 2.5.111~bpo9+1 check for minimap2_2.14+dfsg-1_amd64.deb (click to toggle)
contents of minimap2_2.14+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-11-09 22:36 ./
drwxr-xr-x root/root         0 2018-11-09 22:36 ./usr/
drwxr-xr-x root/root         0 2018-11-09 22:36 ./usr/bin/
-rwxr-xr-x root/root    199952 2018-11-09 22:36 ./usr/bin/minimap2
drwxr-xr-x root/root         0 2018-11-09 22:36 ./usr/share/
drwxr-xr-x root/root         0 2018-11-09 22:36 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-11-09 22:36 ./usr/share/doc/minimap2/
-rw-r--r-- root/root       161 2018-11-09 22:36 ./usr/share/doc/minimap2/changelog.Debian.gz
-rw-r--r-- root/root      1451 2018-11-09 22:36 ./usr/share/doc/minimap2/copyright
-rw-r--r-- root/root    252790 2018-11-09 22:36 ./usr/share/doc/minimap2/minimap2.pdf
-rw-r--r-- root/root       347 2018-11-09 22:36 ./usr/share/doc/minimap2/run-unit-test
drwxr-xr-x root/root         0 2018-11-09 22:36 ./usr/share/doc/minimap2/test/
-rw-r--r-- root/root      5354 2018-11-06 05:03 ./usr/share/doc/minimap2/test/MT-human.fa.gz
-rw-r--r-- root/root      5367 2018-11-06 05:03 ./usr/share/doc/minimap2/test/MT-orang.fa.gz
-rw-r--r-- root/root      3540 2018-11-06 05:03 ./usr/share/doc/minimap2/test/q-inv.fa.gz
-rw-r--r-- root/root        44 2018-11-06 05:03 ./usr/share/doc/minimap2/test/q2.fa
-rw-r--r-- root/root      2525 2018-11-06 05:03 ./usr/share/doc/minimap2/test/t-inv.fa.gz
-rw-r--r-- root/root        79 2018-11-06 05:03 ./usr/share/doc/minimap2/test/t2.fa
-rw-r--r-- root/root      1095 2018-11-09 22:36 ./usr/share/doc/minimap2/test_script
drwxr-xr-x root/root         0 2018-11-09 22:36 ./usr/share/doc-base/
-rw-r--r-- root/root       553 2018-11-09 22:36 ./usr/share/doc-base/minimap2
drwxr-xr-x root/root         0 2018-11-09 22:36 ./usr/share/man/
drwxr-xr-x root/root         0 2018-11-09 22:36 ./usr/share/man/man1/
-rw-r--r-- root/root      6909 2018-11-09 22:36 ./usr/share/man/man1/minimap2.1.gz

Timestamp: 10.11.2018 / 00:01:15 (UTC)