corner image corner image corner image corner image Debian NEW package overview for metabat
metabat_2.15-1_amd64.changes (click to toggle)
Format:1.8
Date:Sun, 31 May 2020 23:08:58 +0200
Source:metabat
Binary:metabat metabat-dbgsym
Architecture:source amd64
Version:2.15-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
metabat    - robust statistical framework for reconstructing genomes from meta
Closes:961946
Changes:
metabat (2.15-1) unstable; urgency=medium

  * Initial release (Closes: #961946)
Files:
d033651fe1f7e72dfd326287d58851f3 2158 science optional metabat_2.15-1.dsc
61a8f6a1334e5367c428505edeb4305a 195575 science optional metabat_2.15.orig.tar.gz
18726621261c545946803e759c80d1f3 8544 science optional metabat_2.15-1.debian.tar.xz
8f02798f347bd7d48cbf78da072d5dd5 3924632 debug optional metabat-dbgsym_2.15-1_amd64.deb
0dd053fb602b0f27f3072aeff7da0522 8061 science optional metabat_2.15-1_amd64.buildinfo
907caf970c6a682830dbce08f1d7ac59 524984 science optional metabat_2.15-1_amd64.deb
metabat_2.15-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:metabat
Binary:metabat
Architecture:any
Version:2.15-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Andreas Tille <tille@debian.org>
Homepage:https://bitbucket.org/berkeleylab/metabat/wiki/Home
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/med-team/metabat
Vcs-Git:https://salsa.debian.org/med-team/metabat.git
Testsuite:autopkgtest
Build-Depends:debhelper-compat (=13), cmake, libboost-graph-dev, libboost-system-dev, libboost-filesystem-dev, libboost-serialization-dev, libboost-program-options-dev, libboost-iostreams-dev, zlib1g-dev, libhts-dev, pkg-config, python3
Package-List:metabat deb science optional arch=any
Files:
61a8f6a1334e5367c428505edeb4305a 195575 metabat_2.15.orig.tar.gz
18726621261c545946803e759c80d1f3 8544 metabat_2.15-1.debian.tar.xz
lintian 2.77.1~bpo10+1 check for metabat_2.15-1.dsc (click to toggle)
README.source for metabat_2.15-1.dsc (click to toggle)
No README.source in this package
control file for metabat_2.15-1_amd64.deb (click to toggle)
Package:metabat
Version:2.15-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1933
Depends:libc6 (>=2.29), libgcc-s1 (>=3.0), libgomp1 (>=6), libhts3 (>=1.10), libstdc++6 (>=9), zlib1g (>=1:1.1.4)
Section:science
Priority:optional
Homepage:https://bitbucket.org/berkeleylab/metabat/wiki/Home
Description:
robust statistical framework for reconstructing genomes from metagenomic data
 MetaBAT integrates empirical probabilistic distances of genome abundance
 and tetranucleotide frequency for accurate metagenome binning. MetaBAT
 outperforms alternative methods in accuracy and computational efficiency
 on both synthetic and real metagenome datasets. It automatically forms
 hundreds of high quality genome bins on a very large assembly consisting
 millions of contigs in a matter of hours on a single node.
lintian 2.77.1~bpo10+1 check for metabat_2.15-1_amd64.deb (click to toggle)
W: metabat: binary-without-manpage usr/bin/aggregateBinDepths.pl
W: metabat: binary-without-manpage usr/bin/aggregateContigOverlapsByBin.pl
W: metabat: binary-without-manpage usr/bin/merge_depths.pl
N: see https://lists.debian.org/debian-med/2018/06/msg00043.html
O: metabat: script-with-language-extension usr/bin/aggregateBinDepths.pl
N: see https://lists.debian.org/debian-med/2018/06/msg00043.html
O: metabat: script-with-language-extension usr/bin/aggregateContigOverlapsByBin.pl
N: see https://lists.debian.org/debian-med/2018/06/msg00043.html
O: metabat: script-with-language-extension usr/bin/merge_depths.pl
N: see https://lists.debian.org/debian-med/2018/06/msg00043.html
O: metabat: script-with-language-extension usr/bin/runMetaBat.sh
contents of metabat_2.15-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-05-31 21:08 ./
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/bin/
-rwxr-xr-x root/root      1363 2020-01-04 20:14 ./usr/bin/aggregateBinDepths.pl
-rwxr-xr-x root/root      2903 2020-05-31 21:08 ./usr/bin/aggregateContigOverlapsByBin.pl
-rwxr-xr-x root/root    104856 2020-05-31 21:08 ./usr/bin/contigOverlaps
-rwxr-xr-x root/root    261080 2020-05-31 21:08 ./usr/bin/jgi_summarize_bam_contig_depths
-rwxr-xr-x root/root      1344 2020-05-31 21:08 ./usr/bin/merge_depths.pl
-rwxr-xr-x root/root    854544 2020-05-31 21:08 ./usr/bin/metabat1
-rwxr-xr-x root/root    653792 2020-05-31 21:08 ./usr/bin/metabat2
-rwxr-xr-x root/root      2719 2020-01-04 20:14 ./usr/bin/runMetaBat.sh
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/share/
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/share/doc/metabat/
-rw-r--r-- root/root      9135 2020-01-04 20:14 ./usr/share/doc/metabat/README.md.gz
-rw-r--r-- root/root       278 2020-05-31 21:08 ./usr/share/doc/metabat/README.test
-rw-r--r-- root/root       154 2020-05-31 21:08 ./usr/share/doc/metabat/changelog.Debian.gz
-rw-r--r-- root/root      2589 2020-05-31 21:08 ./usr/share/doc/metabat/copyright
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/share/doc/metabat/examples/
-rw-r--r-- root/root     47074 2020-01-04 20:14 ./usr/share/doc/metabat/examples/contigs-1000.fastq.bam
-rw-r--r-- root/root        96 2020-01-04 20:14 ./usr/share/doc/metabat/examples/contigs-1000.fastq.bam.bai
-rw-r--r-- root/root      5528 2020-01-04 20:14 ./usr/share/doc/metabat/examples/contigs.fa
-rw-r--r-- root/root       145 2020-01-04 20:14 ./usr/share/doc/metabat/examples/contigs_depth.txt
-rw-r--r-- root/root       582 2020-05-31 21:08 ./usr/share/doc/metabat/run-unit-test
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/share/lintian/
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       116 2020-05-31 21:08 ./usr/share/lintian/overrides/metabat
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/share/man/
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/share/man/man1/
-rw-r--r-- root/root       413 2020-05-31 21:08 ./usr/share/man/man1/contigOverlaps.1.gz
-rw-r--r-- root/root      1071 2020-05-31 21:08 ./usr/share/man/man1/jgi_summarize_bam_contig_depths.1.gz
-rw-r--r-- root/root      2341 2020-05-31 21:08 ./usr/share/man/man1/metabat1.1.gz
-rw-r--r-- root/root      1338 2020-05-31 21:08 ./usr/share/man/man1/metabat2.1.gz
-rw-r--r-- root/root       571 2020-05-31 21:08 ./usr/share/man/man1/runMetaBat.sh.1.gz
control file for metabat-dbgsym_2.15-1_amd64.deb (click to toggle)
Package:metabat-dbgsym
Source:metabat
Version:2.15-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:4516
Depends:metabat (=2.15-1)
Section:debug
Priority:optional
Description:
debug symbols for metabat
Build-Ids:65cd3b744af89bae9cf8c57cb7468b575fe8a1aa 6ede437067fa2bdec9ea41512ad0e8904a6e1fc6 9cf6030efc6cccf453533ae928805d8eb83afa01 ff31d3ebfd7899811316e78030827bd5ba542514
lintian 2.77.1~bpo10+1 check for metabat-dbgsym_2.15-1_amd64.deb (click to toggle)
contents of metabat-dbgsym_2.15-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-05-31 21:08 ./
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/lib/
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/lib/debug/.build-id/65/
-rw-r--r-- root/root   1920856 2020-05-31 21:08 ./usr/lib/debug/.build-id/65/cd3b744af89bae9cf8c57cb7468b575fe8a1aa.debug
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/lib/debug/.build-id/6e/
-rw-r--r-- root/root    351096 2020-05-31 21:08 ./usr/lib/debug/.build-id/6e/de437067fa2bdec9ea41512ad0e8904a6e1fc6.debug
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/lib/debug/.build-id/9c/
-rw-r--r-- root/root   1249032 2020-05-31 21:08 ./usr/lib/debug/.build-id/9c/f6030efc6cccf453533ae928805d8eb83afa01.debug
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/lib/debug/.build-id/ff/
-rw-r--r-- root/root    900360 2020-05-31 21:08 ./usr/lib/debug/.build-id/ff/31d3ebfd7899811316e78030827bd5ba542514.debug
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/lib/debug/.dwz/x86_64-linux-gnu/
-rw-r--r-- root/root    185848 2020-05-31 21:08 ./usr/lib/debug/.dwz/x86_64-linux-gnu/metabat.debug
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/share/
drwxr-xr-x root/root         0 2020-05-31 21:08 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-05-31 21:08 ./usr/share/doc/metabat-dbgsym -> metabat

Timestamp: 31.05.2020 / 22:01:10 (UTC)