corner image corner image corner image corner image Debian NEW package overview for mecat2
mecat2_0.0+git20200428.f54c542+ds-1_amd64.changes (click to toggle)
Format:1.8
Date:Mon, 29 Jun 2020 14:29:05 +0100
Source:mecat2
Binary:mecat2 mecat2-dbgsym
Architecture:source amd64
Version:0.0+git20200428.f54c542+ds-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Shayan Doust <hello@shayandoust.me>
Description:
mecat2     - ultra-fast and accurate de novo assembly tools for SMRT reads
Closes:964202
Changes:
mecat2 (0.0+git20200428.f54c542+ds-1) unstable; urgency=medium

  * Initial release (Closes: #964202)
Files:
cc2929c6fa311333975fe5c2e4e53f07 2123 science optional mecat2_0.0+git20200428.f54c542+ds-1.dsc
1e944b07acb5474e4da65cb10b829ec0 381084 science optional mecat2_0.0+git20200428.f54c542+ds.orig.tar.xz
b754225cb178516a5bb4ac1f860ee9b0 338661312 science optional mecat2_0.0+git20200428.f54c542+ds-1.debian.tar.xz
9b4610868283ca956eaf0bfe1a4cbfea 109712 debug optional mecat2-dbgsym_0.0+git20200428.f54c542+ds-1_amd64.deb
9f46543121035b2b28947b50dab7de25 5987 science optional mecat2_0.0+git20200428.f54c542+ds-1_amd64.buildinfo
ff045de14e6b76a210cb169578231f4a 761152 science optional mecat2_0.0+git20200428.f54c542+ds-1_amd64.deb
mecat2_0.0+git20200428.f54c542+ds-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:mecat2
Binary:mecat2
Architecture:any
Version:0.0+git20200428.f54c542+ds-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Shayan Doust <hello@shayandoust.me>
Homepage:https://github.com/xiaochuanle/MECAT2
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/med-team/mecat2
Vcs-Git:https://salsa.debian.org/med-team/mecat2.git
Testsuite:autopkgtest
Build-Depends:debhelper-compat (=13), zlib1g-dev, perl
Package-List:mecat2 deb science optional arch=any
Files:
1e944b07acb5474e4da65cb10b829ec0 381084 mecat2_0.0+git20200428.f54c542+ds.orig.tar.xz
b754225cb178516a5bb4ac1f860ee9b0 338661312 mecat2_0.0+git20200428.f54c542+ds-1.debian.tar.xz
lintian 2.79.0~bpo10+1 check for mecat2_0.0+git20200428.f54c542+ds-1.dsc (click to toggle)
README.source for mecat2_0.0+git20200428.f54c542+ds-1.dsc (click to toggle)
No README.source in this package
control file for mecat2_0.0+git20200428.f54c542+ds-1_amd64.deb (click to toggle)
Package:mecat2
Version:0.0+git20200428.f54c542+ds-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:4037
Depends:libc6 (>=2.29), libgcc-s1 (>=3.0), libgomp1 (>=4.9), libstdc++6 (>=6), zlib1g (>=1:1.1.4), perl:any
Section:science
Priority:optional
Homepage:https://github.com/xiaochuanle/MECAT2
Description:
ultra-fast and accurate de novo assembly tools for SMRT reads
 An improved version of MECAT. It is an ultra-fast and accurate mapping
 and error correcting de novo assembly tools for single molecula
 sequencing (SMRT) reads. MECAT2 consists of the following three modules:
  1. mecat2map: a fast and accurate alignment tool for SMRT reads.
  2. mecat2cns: correct noisy reads based on their pairwise overlaps.
  3. fsa: a string graph based assembly tool.
lintian 2.79.0~bpo10+1 check for mecat2_0.0+git20200428.f54c542+ds-1_amd64.deb (click to toggle)
W: mecat2: binary-without-manpage usr/bin/mecat2cns
W: mecat2: binary-without-manpage usr/bin/mecat2extseqs
W: mecat2: binary-without-manpage usr/bin/mecat2lcr
W: mecat2: binary-without-manpage usr/bin/mecat2map
W: mecat2: binary-without-manpage usr/bin/mecat2pm4
W: mecat2: binary-without-manpage usr/bin/mecat2splitreads
W: mecat2: binary-without-manpage usr/bin/mecat2trimbases
W: mecat2: binary-without-manpage usr/bin/mecat2viewdb
contents of mecat2_0.0+git20200428.f54c542+ds-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-29 13:29 ./
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/bin/
-rwxr-xr-x root/root    265176 2020-06-29 13:29 ./usr/bin/fsa_assemble
-rwxr-xr-x root/root    240648 2020-06-29 13:29 ./usr/bin/fsa_ctg_bridge
-rwxr-xr-x root/root    216048 2020-06-29 13:29 ./usr/bin/fsa_ol_filter
-rwxr-xr-x root/root     84832 2020-06-29 13:29 ./usr/bin/fsa_rd_stat
-rwxr-xr-x root/root     13160 2020-06-29 13:29 ./usr/bin/mecat
-rwxr-xr-x root/root    689328 2020-06-29 13:29 ./usr/bin/mecat2cns
-rwxr-xr-x root/root    216824 2020-06-29 13:29 ./usr/bin/mecat2extseqs
-rwxr-xr-x root/root    578736 2020-06-29 13:29 ./usr/bin/mecat2lcr
-rwxr-xr-x root/root    853328 2020-06-29 13:29 ./usr/bin/mecat2map
-rwxr-xr-x root/root     93248 2020-06-29 13:29 ./usr/bin/mecat2pcan
-rwxr-xr-x root/root     76864 2020-06-29 13:29 ./usr/bin/mecat2pm4
-rwxr-xr-x root/root    591024 2020-06-29 13:29 ./usr/bin/mecat2splitreads
-rwxr-xr-x root/root     60416 2020-06-29 13:29 ./usr/bin/mecat2trimbases
-rwxr-xr-x root/root     85024 2020-06-29 13:29 ./usr/bin/mecat2viewdb
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/share/
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/share/doc/mecat2/
-rw-r--r-- root/root       170 2020-06-29 13:29 ./usr/share/doc/mecat2/changelog.Debian.gz
-rw-r--r-- root/root      6100 2020-06-29 13:29 ./usr/share/doc/mecat2/copyright
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/share/lintian/
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       804 2020-06-29 13:29 ./usr/share/lintian/overrides/mecat2
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/share/man/
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/share/man/man1/
-rw-r--r-- root/root       744 2020-06-29 13:29 ./usr/share/man/man1/fsa_assemble.1.gz
-rw-r--r-- root/root       806 2020-06-29 13:29 ./usr/share/man/man1/fsa_ctg_bridge.1.gz
-rw-r--r-- root/root       922 2020-06-29 13:29 ./usr/share/man/man1/fsa_ol_filter.1.gz
-rw-r--r-- root/root       313 2020-06-29 13:29 ./usr/share/man/man1/fsa_rd_stat.1.gz
-rw-r--r-- root/root       396 2020-06-29 13:29 ./usr/share/man/man1/mecat.1.gz
-rw-r--r-- root/root       416 2020-06-29 13:29 ./usr/share/man/man1/mecat2pcan.1.gz
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/share/perl5/
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/share/perl5/Plgd/
-rw-r--r-- root/root        80 2020-04-28 11:55 ./usr/share/perl5/Plgd/Grid.pm
-rw-r--r-- root/root      2747 2020-04-28 11:55 ./usr/share/perl5/Plgd/GridLsf.pm
-rw-r--r-- root/root      2122 2020-04-28 11:55 ./usr/share/perl5/Plgd/GridPbs.pm
-rw-r--r-- root/root      2069 2020-04-28 11:55 ./usr/share/perl5/Plgd/GridSge.pm
-rw-r--r-- root/root      3606 2020-04-28 11:55 ./usr/share/perl5/Plgd/GridSlurm.pm
-rw-r--r-- root/root      8768 2020-04-28 11:55 ./usr/share/perl5/Plgd/Project.pm
-rw-r--r-- root/root      4168 2020-04-28 11:55 ./usr/share/perl5/Plgd/Script.pm
-rw-r--r-- root/root      4390 2020-04-28 11:55 ./usr/share/perl5/Plgd/Utils.pm
control file for mecat2-dbgsym_0.0+git20200428.f54c542+ds-1_amd64.deb (click to toggle)
Package:mecat2-dbgsym
Source:mecat2
Version:0.0+git20200428.f54c542+ds-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1005
Depends:mecat2 (=0.0+git20200428.f54c542+ds-1)
Section:debug
Priority:optional
Description:
debug symbols for mecat2
Build-Ids:0674bb18874fd3fb16e125abfaf47c68a0e50ea3 464fc0f42f8ffdd98244e54b71d1dff364d04c50 63cb3eb5e536e088faddd6f6ad490653e871a464 67ba76fb1df0591d37afe7eca74b5f756718be1a 7c44a3776a9314a806b7ee40f588a1eac93717d4 84f93fe49bf59f7f96bd77fc07b3d841526353ba a56b6b228e76cdb5d47b50129821ffdb22a5f92f aca9e8ea8e97114443132e05800ca2d5c456c086 c1128da7a5fb174befb7ae9976951af4b8829b09 c50cfcbdae271403b0ccc718c177298d1b56d2f6 e043ea46f469e25cd55c7262d9d7863027378e22 ec3dd10b82930fdd3dc1d890ee22e278d6fb4ce4 f7ffedcf0f67c7a55d1924b084019ef42458c200
lintian 2.79.0~bpo10+1 check for mecat2-dbgsym_0.0+git20200428.f54c542+ds-1_amd64.deb (click to toggle)
W: mecat2-dbgsym: debug-file-with-no-debug-symbols usr/lib/debug/.build-id/06/74bb18874fd3fb16e125abfaf47c68a0e50ea3.debug
W: mecat2-dbgsym: debug-file-with-no-debug-symbols usr/lib/debug/.build-id/46/4fc0f42f8ffdd98244e54b71d1dff364d04c50.debug
W: mecat2-dbgsym: debug-file-with-no-debug-symbols usr/lib/debug/.build-id/63/cb3eb5e536e088faddd6f6ad490653e871a464.debug
W: mecat2-dbgsym: debug-file-with-no-debug-symbols usr/lib/debug/.build-id/67/ba76fb1df0591d37afe7eca74b5f756718be1a.debug
W: mecat2-dbgsym: debug-file-with-no-debug-symbols usr/lib/debug/.build-id/7c/44a3776a9314a806b7ee40f588a1eac93717d4.debug
W: mecat2-dbgsym: debug-file-with-no-debug-symbols usr/lib/debug/.build-id/84/f93fe49bf59f7f96bd77fc07b3d841526353ba.debug
W: mecat2-dbgsym: debug-file-with-no-debug-symbols usr/lib/debug/.build-id/a5/6b6b228e76cdb5d47b50129821ffdb22a5f92f.debug
W: mecat2-dbgsym: debug-file-with-no-debug-symbols usr/lib/debug/.build-id/ac/a9e8ea8e97114443132e05800ca2d5c456c086.debug
W: mecat2-dbgsym: debug-file-with-no-debug-symbols usr/lib/debug/.build-id/c1/128da7a5fb174befb7ae9976951af4b8829b09.debug
W: mecat2-dbgsym: debug-file-with-no-debug-symbols usr/lib/debug/.build-id/c5/0cfcbdae271403b0ccc718c177298d1b56d2f6.debug
W: mecat2-dbgsym: debug-file-with-no-debug-symbols usr/lib/debug/.build-id/e0/43ea46f469e25cd55c7262d9d7863027378e22.debug
W: mecat2-dbgsym: debug-file-with-no-debug-symbols usr/lib/debug/.build-id/ec/3dd10b82930fdd3dc1d890ee22e278d6fb4ce4.debug
W: mecat2-dbgsym: debug-file-with-no-debug-symbols usr/lib/debug/.build-id/f7/ffedcf0f67c7a55d1924b084019ef42458c200.debug
contents of mecat2-dbgsym_0.0+git20200428.f54c542+ds-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-29 13:29 ./
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/lib/
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/lib/debug/.build-id/06/
-rw-r--r-- root/root     82624 2020-06-29 13:29 ./usr/lib/debug/.build-id/06/74bb18874fd3fb16e125abfaf47c68a0e50ea3.debug
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/lib/debug/.build-id/46/
-rw-r--r-- root/root     27992 2020-06-29 13:29 ./usr/lib/debug/.build-id/46/4fc0f42f8ffdd98244e54b71d1dff364d04c50.debug
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/lib/debug/.build-id/63/
-rw-r--r-- root/root     69528 2020-06-29 13:29 ./usr/lib/debug/.build-id/63/cb3eb5e536e088faddd6f6ad490653e871a464.debug
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/lib/debug/.build-id/67/
-rw-r--r-- root/root     14168 2020-06-29 13:29 ./usr/lib/debug/.build-id/67/ba76fb1df0591d37afe7eca74b5f756718be1a.debug
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/lib/debug/.build-id/7c/
-rw-r--r-- root/root     16936 2020-06-29 13:29 ./usr/lib/debug/.build-id/7c/44a3776a9314a806b7ee40f588a1eac93717d4.debug
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/lib/debug/.build-id/84/
-rw-r--r-- root/root     15752 2020-06-29 13:29 ./usr/lib/debug/.build-id/84/f93fe49bf59f7f96bd77fc07b3d841526353ba.debug
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/lib/debug/.build-id/a5/
-rw-r--r-- root/root     39744 2020-06-29 13:29 ./usr/lib/debug/.build-id/a5/6b6b228e76cdb5d47b50129821ffdb22a5f92f.debug
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/lib/debug/.build-id/ac/
-rw-r--r-- root/root     82328 2020-06-29 13:29 ./usr/lib/debug/.build-id/ac/a9e8ea8e97114443132e05800ca2d5c456c086.debug
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/lib/debug/.build-id/c1/
-rw-r--r-- root/root    176240 2020-06-29 13:29 ./usr/lib/debug/.build-id/c1/128da7a5fb174befb7ae9976951af4b8829b09.debug
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/lib/debug/.build-id/c5/
-rw-r--r-- root/root     17296 2020-06-29 13:29 ./usr/lib/debug/.build-id/c5/0cfcbdae271403b0ccc718c177298d1b56d2f6.debug
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/lib/debug/.build-id/e0/
-rw-r--r-- root/root    149520 2020-06-29 13:29 ./usr/lib/debug/.build-id/e0/43ea46f469e25cd55c7262d9d7863027378e22.debug
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/lib/debug/.build-id/ec/
-rw-r--r-- root/root    158568 2020-06-29 13:29 ./usr/lib/debug/.build-id/ec/3dd10b82930fdd3dc1d890ee22e278d6fb4ce4.debug
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/lib/debug/.build-id/f7/
-rw-r--r-- root/root    150384 2020-06-29 13:29 ./usr/lib/debug/.build-id/f7/ffedcf0f67c7a55d1924b084019ef42458c200.debug
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/share/
drwxr-xr-x root/root         0 2020-06-29 13:29 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-06-29 13:29 ./usr/share/doc/mecat2-dbgsym -> mecat2

Timestamp: 04.07.2020 / 08:11:16 (UTC)